lemboy-google-api-client 0.9.26

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Files changed (555) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +20 -0
  3. data/.rspec +2 -0
  4. data/.rubocop.yml +7 -0
  5. data/.rubocop_todo.yml +63 -0
  6. data/.travis.yml +27 -0
  7. data/.yardopts +12 -0
  8. data/CHANGELOG.md +309 -0
  9. data/CONTRIBUTING.md +31 -0
  10. data/Gemfile +53 -0
  11. data/LICENSE +202 -0
  12. data/MIGRATING.md +171 -0
  13. data/README.md +327 -0
  14. data/Rakefile +2 -0
  15. data/api_names.yaml +36215 -0
  16. data/bin/generate-api +109 -0
  17. data/generated/google/apis/adexchangebuyer2_v2beta1.rb +35 -0
  18. data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +298 -0
  19. data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +122 -0
  20. data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +458 -0
  21. data/generated/google/apis/adexchangebuyer_v1_3.rb +35 -0
  22. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +1335 -0
  23. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +446 -0
  24. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +872 -0
  25. data/generated/google/apis/adexchangebuyer_v1_4.rb +35 -0
  26. data/generated/google/apis/adexchangebuyer_v1_4/classes.rb +3550 -0
  27. data/generated/google/apis/adexchangebuyer_v1_4/representations.rb +1421 -0
  28. data/generated/google/apis/adexchangebuyer_v1_4/service.rb +1538 -0
  29. data/generated/google/apis/adexchangeseller_v2_0.rb +37 -0
  30. data/generated/google/apis/adexchangeseller_v2_0/classes.rb +792 -0
  31. data/generated/google/apis/adexchangeseller_v2_0/representations.rb +347 -0
  32. data/generated/google/apis/adexchangeseller_v2_0/service.rb +667 -0
  33. data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
  34. data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
  35. data/generated/google/apis/admin_datatransfer_v1/representations.rb +130 -0
  36. data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
  37. data/generated/google/apis/admin_directory_v1.rb +113 -0
  38. data/generated/google/apis/admin_directory_v1/classes.rb +3241 -0
  39. data/generated/google/apis/admin_directory_v1/representations.rb +1172 -0
  40. data/generated/google/apis/admin_directory_v1/service.rb +3857 -0
  41. data/generated/google/apis/admin_reports_v1.rb +38 -0
  42. data/generated/google/apis/admin_reports_v1/classes.rb +582 -0
  43. data/generated/google/apis/admin_reports_v1/representations.rb +257 -0
  44. data/generated/google/apis/admin_reports_v1/service.rb +336 -0
  45. data/generated/google/apis/adsense_v1_4.rb +37 -0
  46. data/generated/google/apis/adsense_v1_4/classes.rb +1280 -0
  47. data/generated/google/apis/adsense_v1_4/representations.rb +555 -0
  48. data/generated/google/apis/adsense_v1_4/service.rb +1713 -0
  49. data/generated/google/apis/adsensehost_v4_1.rb +35 -0
  50. data/generated/google/apis/adsensehost_v4_1/classes.rb +836 -0
  51. data/generated/google/apis/adsensehost_v4_1/representations.rb +367 -0
  52. data/generated/google/apis/adsensehost_v4_1/service.rb +1164 -0
  53. data/generated/google/apis/analytics_v3.rb +49 -0
  54. data/generated/google/apis/analytics_v3/classes.rb +5536 -0
  55. data/generated/google/apis/analytics_v3/representations.rb +1992 -0
  56. data/generated/google/apis/analytics_v3/service.rb +3785 -0
  57. data/generated/google/apis/analyticsreporting_v4.rb +37 -0
  58. data/generated/google/apis/analyticsreporting_v4/classes.rb +1420 -0
  59. data/generated/google/apis/analyticsreporting_v4/representations.rb +598 -0
  60. data/generated/google/apis/analyticsreporting_v4/service.rb +88 -0
  61. data/generated/google/apis/androidenterprise_v1.rb +34 -0
  62. data/generated/google/apis/androidenterprise_v1/classes.rb +2250 -0
  63. data/generated/google/apis/androidenterprise_v1/representations.rb +970 -0
  64. data/generated/google/apis/androidenterprise_v1/service.rb +3267 -0
  65. data/generated/google/apis/androidpublisher_v2.rb +34 -0
  66. data/generated/google/apis/androidpublisher_v2/classes.rb +1941 -0
  67. data/generated/google/apis/androidpublisher_v2/representations.rb +975 -0
  68. data/generated/google/apis/androidpublisher_v2/service.rb +2572 -0
  69. data/generated/google/apis/appengine_v1beta4.rb +35 -0
  70. data/generated/google/apis/appengine_v1beta4/classes.rb +1585 -0
  71. data/generated/google/apis/appengine_v1beta4/representations.rb +542 -0
  72. data/generated/google/apis/appengine_v1beta4/service.rb +477 -0
  73. data/generated/google/apis/appengine_v1beta5.rb +40 -0
  74. data/generated/google/apis/appengine_v1beta5/classes.rb +1984 -0
  75. data/generated/google/apis/appengine_v1beta5/representations.rb +765 -0
  76. data/generated/google/apis/appengine_v1beta5/service.rb +864 -0
  77. data/generated/google/apis/appsactivity_v1.rb +46 -0
  78. data/generated/google/apis/appsactivity_v1/classes.rb +415 -0
  79. data/generated/google/apis/appsactivity_v1/representations.rb +209 -0
  80. data/generated/google/apis/appsactivity_v1/service.rb +128 -0
  81. data/generated/google/apis/appstate_v1.rb +34 -0
  82. data/generated/google/apis/appstate_v1/classes.rb +154 -0
  83. data/generated/google/apis/appstate_v1/representations.rb +87 -0
  84. data/generated/google/apis/appstate_v1/service.rb +260 -0
  85. data/generated/google/apis/autoscaler_v1beta2.rb +38 -0
  86. data/generated/google/apis/autoscaler_v1beta2/classes.rb +710 -0
  87. data/generated/google/apis/autoscaler_v1beta2/representations.rb +296 -0
  88. data/generated/google/apis/autoscaler_v1beta2/service.rb +478 -0
  89. data/generated/google/apis/bigquery_v2.rb +52 -0
  90. data/generated/google/apis/bigquery_v2/classes.rb +3081 -0
  91. data/generated/google/apis/bigquery_v2/representations.rb +1094 -0
  92. data/generated/google/apis/bigquery_v2/service.rb +988 -0
  93. data/generated/google/apis/blogger_v3.rb +37 -0
  94. data/generated/google/apis/blogger_v3/classes.rb +1354 -0
  95. data/generated/google/apis/blogger_v3/representations.rb +632 -0
  96. data/generated/google/apis/blogger_v3/service.rb +1587 -0
  97. data/generated/google/apis/books_v1.rb +34 -0
  98. data/generated/google/apis/books_v1/classes.rb +4160 -0
  99. data/generated/google/apis/books_v1/representations.rb +1799 -0
  100. data/generated/google/apis/books_v1/service.rb +2300 -0
  101. data/generated/google/apis/calendar_v3.rb +37 -0
  102. data/generated/google/apis/calendar_v3/classes.rb +1742 -0
  103. data/generated/google/apis/calendar_v3/representations.rb +631 -0
  104. data/generated/google/apis/calendar_v3/service.rb +1968 -0
  105. data/generated/google/apis/civicinfo_v2.rb +32 -0
  106. data/generated/google/apis/civicinfo_v2/classes.rb +1499 -0
  107. data/generated/google/apis/civicinfo_v2/representations.rb +572 -0
  108. data/generated/google/apis/civicinfo_v2/service.rb +300 -0
  109. data/generated/google/apis/classroom_v1.rb +70 -0
  110. data/generated/google/apis/classroom_v1/classes.rb +1572 -0
  111. data/generated/google/apis/classroom_v1/representations.rb +729 -0
  112. data/generated/google/apis/classroom_v1/service.rb +1945 -0
  113. data/generated/google/apis/classroom_v1beta1.rb +49 -0
  114. data/generated/google/apis/classroom_v1beta1/classes.rb +447 -0
  115. data/generated/google/apis/classroom_v1beta1/representations.rb +190 -0
  116. data/generated/google/apis/classroom_v1beta1/service.rb +791 -0
  117. data/generated/google/apis/cloudbilling_v1.rb +35 -0
  118. data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
  119. data/generated/google/apis/cloudbilling_v1/representations.rb +87 -0
  120. data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
  121. data/generated/google/apis/cloudbuild_v1.rb +34 -0
  122. data/generated/google/apis/cloudbuild_v1/classes.rb +919 -0
  123. data/generated/google/apis/cloudbuild_v1/representations.rb +364 -0
  124. data/generated/google/apis/cloudbuild_v1/service.rb +492 -0
  125. data/generated/google/apis/clouddebugger_v2.rb +38 -0
  126. data/generated/google/apis/clouddebugger_v2/classes.rb +1081 -0
  127. data/generated/google/apis/clouddebugger_v2/representations.rb +465 -0
  128. data/generated/google/apis/clouddebugger_v2/service.rb +396 -0
  129. data/generated/google/apis/cloudkms_v1beta1.rb +34 -0
  130. data/generated/google/apis/cloudkms_v1beta1/classes.rb +999 -0
  131. data/generated/google/apis/cloudkms_v1beta1/representations.rb +448 -0
  132. data/generated/google/apis/cloudkms_v1beta1/service.rb +932 -0
  133. data/generated/google/apis/cloudlatencytest_v2.rb +34 -0
  134. data/generated/google/apis/cloudlatencytest_v2/classes.rb +195 -0
  135. data/generated/google/apis/cloudlatencytest_v2/representations.rb +127 -0
  136. data/generated/google/apis/cloudlatencytest_v2/service.rb +135 -0
  137. data/generated/google/apis/cloudmonitoring_v2beta2.rb +37 -0
  138. data/generated/google/apis/cloudmonitoring_v2beta2/classes.rb +679 -0
  139. data/generated/google/apis/cloudmonitoring_v2beta2/representations.rb +353 -0
  140. data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +452 -0
  141. data/generated/google/apis/cloudresourcemanager_v1.rb +38 -0
  142. data/generated/google/apis/cloudresourcemanager_v1/classes.rb +886 -0
  143. data/generated/google/apis/cloudresourcemanager_v1/representations.rb +359 -0
  144. data/generated/google/apis/cloudresourcemanager_v1/service.rb +686 -0
  145. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +38 -0
  146. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +682 -0
  147. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +312 -0
  148. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +710 -0
  149. data/generated/google/apis/cloudtrace_v1.rb +43 -0
  150. data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
  151. data/generated/google/apis/cloudtrace_v1/representations.rb +102 -0
  152. data/generated/google/apis/cloudtrace_v1/service.rb +192 -0
  153. data/generated/google/apis/clouduseraccounts_beta.rb +44 -0
  154. data/generated/google/apis/clouduseraccounts_beta/classes.rb +845 -0
  155. data/generated/google/apis/clouduseraccounts_beta/representations.rb +352 -0
  156. data/generated/google/apis/clouduseraccounts_beta/service.rb +907 -0
  157. data/generated/google/apis/compute_beta.rb +49 -0
  158. data/generated/google/apis/compute_beta/classes.rb +12261 -0
  159. data/generated/google/apis/compute_beta/representations.rb +4615 -0
  160. data/generated/google/apis/compute_beta/service.rb +15330 -0
  161. data/generated/google/apis/compute_v1.rb +49 -0
  162. data/generated/google/apis/compute_v1/classes.rb +11179 -0
  163. data/generated/google/apis/compute_v1/representations.rb +4203 -0
  164. data/generated/google/apis/compute_v1/service.rb +12937 -0
  165. data/generated/google/apis/container_v1.rb +35 -0
  166. data/generated/google/apis/container_v1/classes.rb +1040 -0
  167. data/generated/google/apis/container_v1/representations.rb +415 -0
  168. data/generated/google/apis/container_v1/service.rb +659 -0
  169. data/generated/google/apis/container_v1beta1.rb +35 -0
  170. data/generated/google/apis/container_v1beta1/classes.rb +466 -0
  171. data/generated/google/apis/container_v1beta1/representations.rb +177 -0
  172. data/generated/google/apis/container_v1beta1/service.rb +394 -0
  173. data/generated/google/apis/content_v2.rb +35 -0
  174. data/generated/google/apis/content_v2/classes.rb +6887 -0
  175. data/generated/google/apis/content_v2/representations.rb +2963 -0
  176. data/generated/google/apis/content_v2/service.rb +2653 -0
  177. data/generated/google/apis/coordinate_v1.rb +37 -0
  178. data/generated/google/apis/coordinate_v1/classes.rb +669 -0
  179. data/generated/google/apis/coordinate_v1/representations.rb +321 -0
  180. data/generated/google/apis/coordinate_v1/service.rb +678 -0
  181. data/generated/google/apis/customsearch_v1.rb +31 -0
  182. data/generated/google/apis/customsearch_v1/classes.rb +771 -0
  183. data/generated/google/apis/customsearch_v1/representations.rb +302 -0
  184. data/generated/google/apis/customsearch_v1/service.rb +207 -0
  185. data/generated/google/apis/dataflow_v1b3.rb +37 -0
  186. data/generated/google/apis/dataflow_v1b3/classes.rb +4225 -0
  187. data/generated/google/apis/dataflow_v1b3/representations.rb +1809 -0
  188. data/generated/google/apis/dataflow_v1b3/service.rb +874 -0
  189. data/generated/google/apis/dataproc_v1.rb +34 -0
  190. data/generated/google/apis/dataproc_v1/classes.rb +1716 -0
  191. data/generated/google/apis/dataproc_v1/representations.rb +678 -0
  192. data/generated/google/apis/dataproc_v1/service.rb +670 -0
  193. data/generated/google/apis/datastore_v1.rb +38 -0
  194. data/generated/google/apis/datastore_v1/classes.rb +1289 -0
  195. data/generated/google/apis/datastore_v1/representations.rb +572 -0
  196. data/generated/google/apis/datastore_v1/service.rb +259 -0
  197. data/generated/google/apis/datastore_v1beta2.rb +40 -0
  198. data/generated/google/apis/datastore_v1beta2/classes.rb +1186 -0
  199. data/generated/google/apis/datastore_v1beta2/representations.rb +594 -0
  200. data/generated/google/apis/datastore_v1beta2/service.rb +294 -0
  201. data/generated/google/apis/datastore_v1beta3.rb +38 -0
  202. data/generated/google/apis/datastore_v1beta3/classes.rb +1284 -0
  203. data/generated/google/apis/datastore_v1beta3/representations.rb +572 -0
  204. data/generated/google/apis/datastore_v1beta3/service.rb +259 -0
  205. data/generated/google/apis/deploymentmanager_v2.rb +43 -0
  206. data/generated/google/apis/deploymentmanager_v2/classes.rb +1582 -0
  207. data/generated/google/apis/deploymentmanager_v2/representations.rb +686 -0
  208. data/generated/google/apis/deploymentmanager_v2/service.rb +1026 -0
  209. data/generated/google/apis/deploymentmanager_v2beta2.rb +44 -0
  210. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +843 -0
  211. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +306 -0
  212. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +689 -0
  213. data/generated/google/apis/dfareporting_v2_1.rb +37 -0
  214. data/generated/google/apis/dfareporting_v2_1/classes.rb +10770 -0
  215. data/generated/google/apis/dfareporting_v2_1/representations.rb +3438 -0
  216. data/generated/google/apis/dfareporting_v2_1/service.rb +8585 -0
  217. data/generated/google/apis/dfareporting_v2_3.rb +37 -0
  218. data/generated/google/apis/dfareporting_v2_3/classes.rb +10839 -0
  219. data/generated/google/apis/dfareporting_v2_3/representations.rb +3829 -0
  220. data/generated/google/apis/dfareporting_v2_3/service.rb +8581 -0
  221. data/generated/google/apis/dfareporting_v2_5.rb +40 -0
  222. data/generated/google/apis/dfareporting_v2_5/classes.rb +11225 -0
  223. data/generated/google/apis/dfareporting_v2_5/representations.rb +3982 -0
  224. data/generated/google/apis/dfareporting_v2_5/service.rb +8755 -0
  225. data/generated/google/apis/dfareporting_v2_6.rb +40 -0
  226. data/generated/google/apis/dfareporting_v2_6/classes.rb +11586 -0
  227. data/generated/google/apis/dfareporting_v2_6/representations.rb +4119 -0
  228. data/generated/google/apis/dfareporting_v2_6/service.rb +9025 -0
  229. data/generated/google/apis/dfareporting_v2_7.rb +40 -0
  230. data/generated/google/apis/dfareporting_v2_7/classes.rb +11876 -0
  231. data/generated/google/apis/dfareporting_v2_7/representations.rb +4243 -0
  232. data/generated/google/apis/dfareporting_v2_7/service.rb +9095 -0
  233. data/generated/google/apis/discovery_v1.rb +32 -0
  234. data/generated/google/apis/discovery_v1/classes.rb +961 -0
  235. data/generated/google/apis/discovery_v1/representations.rb +397 -0
  236. data/generated/google/apis/discovery_v1/service.rb +142 -0
  237. data/generated/google/apis/dns_v1.rb +43 -0
  238. data/generated/google/apis/dns_v1/classes.rb +406 -0
  239. data/generated/google/apis/dns_v1/representations.rb +167 -0
  240. data/generated/google/apis/dns_v1/service.rb +453 -0
  241. data/generated/google/apis/dns_v2beta1.rb +43 -0
  242. data/generated/google/apis/dns_v2beta1/classes.rb +915 -0
  243. data/generated/google/apis/dns_v2beta1/representations.rb +368 -0
  244. data/generated/google/apis/dns_v2beta1/service.rb +768 -0
  245. data/generated/google/apis/doubleclickbidmanager_v1.rb +31 -0
  246. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +795 -0
  247. data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +368 -0
  248. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +376 -0
  249. data/generated/google/apis/doubleclicksearch_v2.rb +35 -0
  250. data/generated/google/apis/doubleclicksearch_v2/classes.rb +960 -0
  251. data/generated/google/apis/doubleclicksearch_v2/representations.rb +350 -0
  252. data/generated/google/apis/doubleclicksearch_v2/service.rb +480 -0
  253. data/generated/google/apis/drive_v2.rb +59 -0
  254. data/generated/google/apis/drive_v2/classes.rb +2633 -0
  255. data/generated/google/apis/drive_v2/representations.rb +885 -0
  256. data/generated/google/apis/drive_v2/service.rb +2754 -0
  257. data/generated/google/apis/drive_v3.rb +56 -0
  258. data/generated/google/apis/drive_v3/classes.rb +1611 -0
  259. data/generated/google/apis/drive_v3/representations.rb +555 -0
  260. data/generated/google/apis/drive_v3/service.rb +1553 -0
  261. data/generated/google/apis/fitness_v1.rb +85 -0
  262. data/generated/google/apis/fitness_v1/classes.rb +943 -0
  263. data/generated/google/apis/fitness_v1/representations.rb +380 -0
  264. data/generated/google/apis/fitness_v1/service.rb +674 -0
  265. data/generated/google/apis/fusiontables_v2.rb +37 -0
  266. data/generated/google/apis/fusiontables_v2/classes.rb +1049 -0
  267. data/generated/google/apis/fusiontables_v2/representations.rb +457 -0
  268. data/generated/google/apis/fusiontables_v2/service.rb +1463 -0
  269. data/generated/google/apis/games_configuration_v1configuration.rb +34 -0
  270. data/generated/google/apis/games_configuration_v1configuration/classes.rb +506 -0
  271. data/generated/google/apis/games_configuration_v1configuration/representations.rb +228 -0
  272. data/generated/google/apis/games_configuration_v1configuration/service.rb +565 -0
  273. data/generated/google/apis/games_management_v1management.rb +37 -0
  274. data/generated/google/apis/games_management_v1management/classes.rb +567 -0
  275. data/generated/google/apis/games_management_v1management/representations.rb +278 -0
  276. data/generated/google/apis/games_management_v1management/service.rb +994 -0
  277. data/generated/google/apis/games_v1.rb +40 -0
  278. data/generated/google/apis/games_v1/classes.rb +4667 -0
  279. data/generated/google/apis/games_v1/representations.rb +1800 -0
  280. data/generated/google/apis/games_v1/service.rb +2449 -0
  281. data/generated/google/apis/gan_v1beta1.rb +31 -0
  282. data/generated/google/apis/gan_v1beta1/classes.rb +1428 -0
  283. data/generated/google/apis/gan_v1beta1/representations.rb +462 -0
  284. data/generated/google/apis/gan_v1beta1/service.rb +682 -0
  285. data/generated/google/apis/genomics_v1.rb +46 -0
  286. data/generated/google/apis/genomics_v1/classes.rb +3477 -0
  287. data/generated/google/apis/genomics_v1/representations.rb +1284 -0
  288. data/generated/google/apis/genomics_v1/service.rb +2207 -0
  289. data/generated/google/apis/genomics_v1beta2.rb +46 -0
  290. data/generated/google/apis/genomics_v1beta2/classes.rb +3288 -0
  291. data/generated/google/apis/genomics_v1beta2/representations.rb +1194 -0
  292. data/generated/google/apis/genomics_v1beta2/service.rb +2392 -0
  293. data/generated/google/apis/gmail_v1.rb +61 -0
  294. data/generated/google/apis/gmail_v1/classes.rb +1382 -0
  295. data/generated/google/apis/gmail_v1/representations.rb +624 -0
  296. data/generated/google/apis/gmail_v1/service.rb +2447 -0
  297. data/generated/google/apis/groupsmigration_v1.rb +34 -0
  298. data/generated/google/apis/groupsmigration_v1/classes.rb +51 -0
  299. data/generated/google/apis/groupsmigration_v1/representations.rb +40 -0
  300. data/generated/google/apis/groupsmigration_v1/service.rb +110 -0
  301. data/generated/google/apis/groupssettings_v1.rb +34 -0
  302. data/generated/google/apis/groupssettings_v1/classes.rb +240 -0
  303. data/generated/google/apis/groupssettings_v1/representations.rb +69 -0
  304. data/generated/google/apis/groupssettings_v1/service.rb +179 -0
  305. data/generated/google/apis/iam_v1.rb +36 -0
  306. data/generated/google/apis/iam_v1/classes.rb +640 -0
  307. data/generated/google/apis/iam_v1/representations.rb +316 -0
  308. data/generated/google/apis/iam_v1/service.rb +554 -0
  309. data/generated/google/apis/identitytoolkit_v3.rb +37 -0
  310. data/generated/google/apis/identitytoolkit_v3/classes.rb +2182 -0
  311. data/generated/google/apis/identitytoolkit_v3/representations.rb +742 -0
  312. data/generated/google/apis/identitytoolkit_v3/service.rb +657 -0
  313. data/generated/google/apis/kgsearch_v1.rb +31 -0
  314. data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
  315. data/generated/google/apis/kgsearch_v1/representations.rb +41 -0
  316. data/generated/google/apis/kgsearch_v1/service.rb +113 -0
  317. data/generated/google/apis/language_v1beta1.rb +36 -0
  318. data/generated/google/apis/language_v1beta1/classes.rb +757 -0
  319. data/generated/google/apis/language_v1beta1/representations.rb +339 -0
  320. data/generated/google/apis/language_v1beta1/service.rb +184 -0
  321. data/generated/google/apis/licensing_v1.rb +34 -0
  322. data/generated/google/apis/licensing_v1/classes.rb +132 -0
  323. data/generated/google/apis/licensing_v1/representations.rb +74 -0
  324. data/generated/google/apis/licensing_v1/service.rb +369 -0
  325. data/generated/google/apis/logging_v1beta3.rb +47 -0
  326. data/generated/google/apis/logging_v1beta3/classes.rb +1079 -0
  327. data/generated/google/apis/logging_v1beta3/representations.rb +366 -0
  328. data/generated/google/apis/logging_v1beta3/service.rb +1001 -0
  329. data/generated/google/apis/logging_v2beta1.rb +46 -0
  330. data/generated/google/apis/logging_v2beta1/classes.rb +1254 -0
  331. data/generated/google/apis/logging_v2beta1/representations.rb +421 -0
  332. data/generated/google/apis/logging_v2beta1/service.rb +788 -0
  333. data/generated/google/apis/manager_v1beta2.rb +53 -0
  334. data/generated/google/apis/manager_v1beta2/classes.rb +1287 -0
  335. data/generated/google/apis/manager_v1beta2/representations.rb +606 -0
  336. data/generated/google/apis/manager_v1beta2/service.rb +372 -0
  337. data/generated/google/apis/manufacturers_v1.rb +34 -0
  338. data/generated/google/apis/manufacturers_v1/classes.rb +258 -0
  339. data/generated/google/apis/manufacturers_v1/representations.rb +103 -0
  340. data/generated/google/apis/manufacturers_v1/service.rb +138 -0
  341. data/generated/google/apis/mirror_v1.rb +37 -0
  342. data/generated/google/apis/mirror_v1/classes.rb +1072 -0
  343. data/generated/google/apis/mirror_v1/representations.rb +390 -0
  344. data/generated/google/apis/mirror_v1/service.rb +977 -0
  345. data/generated/google/apis/monitoring_v3.rb +45 -0
  346. data/generated/google/apis/monitoring_v3/classes.rb +1335 -0
  347. data/generated/google/apis/monitoring_v3/representations.rb +516 -0
  348. data/generated/google/apis/monitoring_v3/service.rb +706 -0
  349. data/generated/google/apis/mybusiness_v3.rb +32 -0
  350. data/generated/google/apis/mybusiness_v3/classes.rb +1864 -0
  351. data/generated/google/apis/mybusiness_v3/representations.rb +741 -0
  352. data/generated/google/apis/mybusiness_v3/service.rb +960 -0
  353. data/generated/google/apis/oauth2_v2.rb +43 -0
  354. data/generated/google/apis/oauth2_v2/classes.rb +245 -0
  355. data/generated/google/apis/oauth2_v2/representations.rb +102 -0
  356. data/generated/google/apis/oauth2_v2/service.rb +199 -0
  357. data/generated/google/apis/pagespeedonline_v2.rb +32 -0
  358. data/generated/google/apis/pagespeedonline_v2/classes.rb +614 -0
  359. data/generated/google/apis/pagespeedonline_v2/representations.rb +272 -0
  360. data/generated/google/apis/pagespeedonline_v2/service.rb +119 -0
  361. data/generated/google/apis/partners_v2.rb +32 -0
  362. data/generated/google/apis/partners_v2/classes.rb +942 -0
  363. data/generated/google/apis/partners_v2/representations.rb +454 -0
  364. data/generated/google/apis/partners_v2/service.rb +400 -0
  365. data/generated/google/apis/people_v1.rb +59 -0
  366. data/generated/google/apis/people_v1/classes.rb +1521 -0
  367. data/generated/google/apis/people_v1/representations.rb +663 -0
  368. data/generated/google/apis/people_v1/service.rb +189 -0
  369. data/generated/google/apis/plus_domains_v1.rb +61 -0
  370. data/generated/google/apis/plus_domains_v1/classes.rb +2609 -0
  371. data/generated/google/apis/plus_domains_v1/representations.rb +1111 -0
  372. data/generated/google/apis/plus_domains_v1/service.rb +904 -0
  373. data/generated/google/apis/plus_v1.rb +43 -0
  374. data/generated/google/apis/plus_v1/classes.rb +2094 -0
  375. data/generated/google/apis/plus_v1/representations.rb +907 -0
  376. data/generated/google/apis/plus_v1/service.rb +470 -0
  377. data/generated/google/apis/prediction_v1_6.rb +47 -0
  378. data/generated/google/apis/prediction_v1_6/classes.rb +751 -0
  379. data/generated/google/apis/prediction_v1_6/representations.rb +369 -0
  380. data/generated/google/apis/prediction_v1_6/service.rb +380 -0
  381. data/generated/google/apis/proximitybeacon_v1beta1.rb +34 -0
  382. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +786 -0
  383. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +347 -0
  384. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +806 -0
  385. data/generated/google/apis/pubsub_v1.rb +37 -0
  386. data/generated/google/apis/pubsub_v1/classes.rb +676 -0
  387. data/generated/google/apis/pubsub_v1/representations.rb +323 -0
  388. data/generated/google/apis/pubsub_v1/service.rb +900 -0
  389. data/generated/google/apis/pubsub_v1beta2.rb +37 -0
  390. data/generated/google/apis/pubsub_v1beta2/classes.rb +620 -0
  391. data/generated/google/apis/pubsub_v1beta2/representations.rb +282 -0
  392. data/generated/google/apis/pubsub_v1beta2/service.rb +774 -0
  393. data/generated/google/apis/qpx_express_v1.rb +31 -0
  394. data/generated/google/apis/qpx_express_v1/classes.rb +1274 -0
  395. data/generated/google/apis/qpx_express_v1/representations.rb +473 -0
  396. data/generated/google/apis/qpx_express_v1/service.rb +100 -0
  397. data/generated/google/apis/replicapool_v1beta2.rb +44 -0
  398. data/generated/google/apis/replicapool_v1beta2/classes.rb +631 -0
  399. data/generated/google/apis/replicapool_v1beta2/representations.rb +264 -0
  400. data/generated/google/apis/replicapool_v1beta2/service.rb +608 -0
  401. data/generated/google/apis/replicapoolupdater_v1beta1.rb +45 -0
  402. data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +733 -0
  403. data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +294 -0
  404. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +509 -0
  405. data/generated/google/apis/reseller_v1.rb +37 -0
  406. data/generated/google/apis/reseller_v1/classes.rb +540 -0
  407. data/generated/google/apis/reseller_v1/representations.rb +225 -0
  408. data/generated/google/apis/reseller_v1/service.rb +623 -0
  409. data/generated/google/apis/resourceviews_v1beta2.rb +50 -0
  410. data/generated/google/apis/resourceviews_v1beta2/classes.rb +660 -0
  411. data/generated/google/apis/resourceviews_v1beta2/representations.rb +301 -0
  412. data/generated/google/apis/resourceviews_v1beta2/service.rb +563 -0
  413. data/generated/google/apis/script_v1.rb +64 -0
  414. data/generated/google/apis/script_v1/classes.rb +265 -0
  415. data/generated/google/apis/script_v1/representations.rb +119 -0
  416. data/generated/google/apis/script_v1/service.rb +98 -0
  417. data/generated/google/apis/sheets_v4.rb +43 -0
  418. data/generated/google/apis/sheets_v4/classes.rb +6368 -0
  419. data/generated/google/apis/sheets_v4/representations.rb +2289 -0
  420. data/generated/google/apis/sheets_v4/service.rb +569 -0
  421. data/generated/google/apis/site_verification_v1.rb +37 -0
  422. data/generated/google/apis/site_verification_v1/classes.rb +185 -0
  423. data/generated/google/apis/site_verification_v1/representations.rb +113 -0
  424. data/generated/google/apis/site_verification_v1/service.rb +315 -0
  425. data/generated/google/apis/slides_v1.rb +49 -0
  426. data/generated/google/apis/slides_v1/classes.rb +4044 -0
  427. data/generated/google/apis/slides_v1/representations.rb +1765 -0
  428. data/generated/google/apis/slides_v1/service.rb +202 -0
  429. data/generated/google/apis/speech_v1beta1.rb +34 -0
  430. data/generated/google/apis/speech_v1beta1/classes.rb +513 -0
  431. data/generated/google/apis/speech_v1beta1/representations.rb +218 -0
  432. data/generated/google/apis/speech_v1beta1/service.rb +273 -0
  433. data/generated/google/apis/sqladmin_v1beta4.rb +38 -0
  434. data/generated/google/apis/sqladmin_v1beta4/classes.rb +2142 -0
  435. data/generated/google/apis/sqladmin_v1beta4/representations.rb +893 -0
  436. data/generated/google/apis/sqladmin_v1beta4/service.rb +1709 -0
  437. data/generated/google/apis/storage_v1.rb +46 -0
  438. data/generated/google/apis/storage_v1/classes.rb +1255 -0
  439. data/generated/google/apis/storage_v1/representations.rb +502 -0
  440. data/generated/google/apis/storage_v1/service.rb +1906 -0
  441. data/generated/google/apis/storagetransfer_v1.rb +35 -0
  442. data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
  443. data/generated/google/apis/storagetransfer_v1/representations.rb +418 -0
  444. data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
  445. data/generated/google/apis/tagmanager_v1.rb +52 -0
  446. data/generated/google/apis/tagmanager_v1/classes.rb +1494 -0
  447. data/generated/google/apis/tagmanager_v1/representations.rb +611 -0
  448. data/generated/google/apis/tagmanager_v1/service.rb +2119 -0
  449. data/generated/google/apis/taskqueue_v1beta2.rb +37 -0
  450. data/generated/google/apis/taskqueue_v1beta2/classes.rb +254 -0
  451. data/generated/google/apis/taskqueue_v1beta2/representations.rb +126 -0
  452. data/generated/google/apis/taskqueue_v1beta2/service.rb +408 -0
  453. data/generated/google/apis/tasks_v1.rb +37 -0
  454. data/generated/google/apis/tasks_v1/classes.rb +296 -0
  455. data/generated/google/apis/tasks_v1/representations.rb +125 -0
  456. data/generated/google/apis/tasks_v1/service.rb +643 -0
  457. data/generated/google/apis/translate_v2.rb +31 -0
  458. data/generated/google/apis/translate_v2/classes.rb +168 -0
  459. data/generated/google/apis/translate_v2/representations.rb +121 -0
  460. data/generated/google/apis/translate_v2/service.rb +182 -0
  461. data/generated/google/apis/urlshortener_v1.rb +34 -0
  462. data/generated/google/apis/urlshortener_v1/classes.rb +246 -0
  463. data/generated/google/apis/urlshortener_v1/representations.rb +121 -0
  464. data/generated/google/apis/urlshortener_v1/service.rb +176 -0
  465. data/generated/google/apis/vision_v1.rb +36 -0
  466. data/generated/google/apis/vision_v1/classes.rb +1267 -0
  467. data/generated/google/apis/vision_v1/representations.rb +418 -0
  468. data/generated/google/apis/vision_v1/service.rb +90 -0
  469. data/generated/google/apis/webmasters_v3.rb +37 -0
  470. data/generated/google/apis/webmasters_v3/classes.rb +570 -0
  471. data/generated/google/apis/webmasters_v3/representations.rb +283 -0
  472. data/generated/google/apis/webmasters_v3/service.rb +573 -0
  473. data/generated/google/apis/youtube_analytics_v1.rb +46 -0
  474. data/generated/google/apis/youtube_analytics_v1/classes.rb +337 -0
  475. data/generated/google/apis/youtube_analytics_v1/representations.rb +174 -0
  476. data/generated/google/apis/youtube_analytics_v1/service.rb +486 -0
  477. data/generated/google/apis/youtube_partner_v1.rb +37 -0
  478. data/generated/google/apis/youtube_partner_v1/classes.rb +3854 -0
  479. data/generated/google/apis/youtube_partner_v1/representations.rb +1537 -0
  480. data/generated/google/apis/youtube_partner_v1/service.rb +3269 -0
  481. data/generated/google/apis/youtube_v3.rb +50 -0
  482. data/generated/google/apis/youtube_v3/classes.rb +8375 -0
  483. data/generated/google/apis/youtube_v3/representations.rb +3273 -0
  484. data/generated/google/apis/youtube_v3/service.rb +4440 -0
  485. data/generated/google/apis/youtubereporting_v1.rb +38 -0
  486. data/generated/google/apis/youtubereporting_v1/classes.rb +302 -0
  487. data/generated/google/apis/youtubereporting_v1/representations.rb +149 -0
  488. data/generated/google/apis/youtubereporting_v1/service.rb +385 -0
  489. data/google-api-client.gemspec +33 -0
  490. data/lib/cacerts.pem +2183 -0
  491. data/lib/google/api_client/auth/installed_app.rb +128 -0
  492. data/lib/google/api_client/auth/key_utils.rb +94 -0
  493. data/lib/google/api_client/auth/storage.rb +104 -0
  494. data/lib/google/api_client/auth/storages/file_store.rb +57 -0
  495. data/lib/google/api_client/auth/storages/redis_store.rb +59 -0
  496. data/lib/google/api_client/client_secrets.rb +177 -0
  497. data/lib/google/apis.rb +58 -0
  498. data/lib/google/apis/core/api_command.rb +146 -0
  499. data/lib/google/apis/core/base_service.rb +401 -0
  500. data/lib/google/apis/core/batch.rb +239 -0
  501. data/lib/google/apis/core/download.rb +108 -0
  502. data/lib/google/apis/core/hashable.rb +44 -0
  503. data/lib/google/apis/core/http_client_adapter.rb +82 -0
  504. data/lib/google/apis/core/http_command.rb +332 -0
  505. data/lib/google/apis/core/json_representation.rb +145 -0
  506. data/lib/google/apis/core/logging.rb +30 -0
  507. data/lib/google/apis/core/multipart.rb +187 -0
  508. data/lib/google/apis/core/upload.rb +295 -0
  509. data/lib/google/apis/errors.rb +80 -0
  510. data/lib/google/apis/generator.rb +70 -0
  511. data/lib/google/apis/generator/annotator.rb +301 -0
  512. data/lib/google/apis/generator/helpers.rb +74 -0
  513. data/lib/google/apis/generator/model.rb +143 -0
  514. data/lib/google/apis/generator/template.rb +124 -0
  515. data/lib/google/apis/generator/templates/_class.tmpl +40 -0
  516. data/lib/google/apis/generator/templates/_method.tmpl +92 -0
  517. data/lib/google/apis/generator/templates/_representation.tmpl +51 -0
  518. data/lib/google/apis/generator/templates/_representation_stub.tmpl +17 -0
  519. data/lib/google/apis/generator/templates/_representation_type.tmpl +10 -0
  520. data/lib/google/apis/generator/templates/classes.rb.tmpl +29 -0
  521. data/lib/google/apis/generator/templates/module.rb.tmpl +40 -0
  522. data/lib/google/apis/generator/templates/representations.rb.tmpl +32 -0
  523. data/lib/google/apis/generator/templates/service.rb.tmpl +60 -0
  524. data/lib/google/apis/options.rb +85 -0
  525. data/lib/google/apis/version.rb +39 -0
  526. data/rakelib/metrics.rake +22 -0
  527. data/rakelib/rubocop.rake +10 -0
  528. data/rakelib/spec.rake +11 -0
  529. data/rakelib/yard.rake +11 -0
  530. data/samples/cli/.env +4 -0
  531. data/samples/cli/Gemfile +7 -0
  532. data/samples/cli/README.md +51 -0
  533. data/samples/cli/google-api-samples +32 -0
  534. data/samples/cli/lib/base_cli.rb +95 -0
  535. data/samples/cli/lib/samples/analytics.rb +62 -0
  536. data/samples/cli/lib/samples/androidpublisher.rb +47 -0
  537. data/samples/cli/lib/samples/bigquery.rb +101 -0
  538. data/samples/cli/lib/samples/calendar.rb +83 -0
  539. data/samples/cli/lib/samples/drive.rb +82 -0
  540. data/samples/cli/lib/samples/gmail.rb +124 -0
  541. data/samples/cli/lib/samples/pubsub.rb +114 -0
  542. data/samples/cli/lib/samples/sheets.rb +61 -0
  543. data/samples/cli/lib/samples/translate.rb +44 -0
  544. data/samples/cli/lib/samples/you_tube.rb +44 -0
  545. data/samples/web/.env +2 -0
  546. data/samples/web/Gemfile +7 -0
  547. data/samples/web/README.md +44 -0
  548. data/samples/web/app.rb +120 -0
  549. data/samples/web/views/calendar.erb +34 -0
  550. data/samples/web/views/drive.erb +33 -0
  551. data/samples/web/views/home.erb +34 -0
  552. data/samples/web/views/layout.erb +40 -0
  553. data/sync.rb +71 -0
  554. data/third_party/hurley_patches.rb +103 -0
  555. metadata +735 -0
@@ -0,0 +1,46 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'google/apis/genomics_v1/service.rb'
16
+ require 'google/apis/genomics_v1/classes.rb'
17
+ require 'google/apis/genomics_v1/representations.rb'
18
+
19
+ module Google
20
+ module Apis
21
+ # Genomics API
22
+ #
23
+ # Upload, process, query, and search Genomics data in the cloud.
24
+ #
25
+ # @see https://cloud.google.com/genomics
26
+ module GenomicsV1
27
+ VERSION = 'V1'
28
+ REVISION = '20170126'
29
+
30
+ # View and manage your data in Google BigQuery
31
+ AUTH_BIGQUERY = 'https://www.googleapis.com/auth/bigquery'
32
+
33
+ # Manage your data in Google Cloud Storage
34
+ AUTH_DEVSTORAGE_READ_WRITE = 'https://www.googleapis.com/auth/devstorage.read_write'
35
+
36
+ # View and manage your data across Google Cloud Platform services
37
+ AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
38
+
39
+ # View Genomics data
40
+ AUTH_GENOMICS_READONLY = 'https://www.googleapis.com/auth/genomics.readonly'
41
+
42
+ # View and manage Genomics data
43
+ AUTH_GENOMICS = 'https://www.googleapis.com/auth/genomics'
44
+ end
45
+ end
46
+ end
@@ -0,0 +1,3477 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'date'
16
+ require 'google/apis/core/base_service'
17
+ require 'google/apis/core/json_representation'
18
+ require 'google/apis/core/hashable'
19
+ require 'google/apis/errors'
20
+
21
+ module Google
22
+ module Apis
23
+ module GenomicsV1
24
+
25
+ # A bucket over which read coverage has been precomputed. A bucket corresponds
26
+ # to a specific range of the reference sequence.
27
+ class CoverageBucket
28
+ include Google::Apis::Core::Hashable
29
+
30
+ # The average number of reads which are aligned to each individual
31
+ # reference base in this bucket.
32
+ # Corresponds to the JSON property `meanCoverage`
33
+ # @return [Float]
34
+ attr_accessor :mean_coverage
35
+
36
+ # A 0-based half-open genomic coordinate range for search requests.
37
+ # Corresponds to the JSON property `range`
38
+ # @return [Google::Apis::GenomicsV1::Range]
39
+ attr_accessor :range
40
+
41
+ def initialize(**args)
42
+ update!(**args)
43
+ end
44
+
45
+ # Update properties of this object
46
+ def update!(**args)
47
+ @mean_coverage = args[:mean_coverage] if args.key?(:mean_coverage)
48
+ @range = args[:range] if args.key?(:range)
49
+ end
50
+ end
51
+
52
+ # Describes a Compute Engine resource that is being managed by a running
53
+ # pipeline.
54
+ class ComputeEngine
55
+ include Google::Apis::Core::Hashable
56
+
57
+ # The instance on which the operation is running.
58
+ # Corresponds to the JSON property `instanceName`
59
+ # @return [String]
60
+ attr_accessor :instance_name
61
+
62
+ # The availability zone in which the instance resides.
63
+ # Corresponds to the JSON property `zone`
64
+ # @return [String]
65
+ attr_accessor :zone
66
+
67
+ # The machine type of the instance.
68
+ # Corresponds to the JSON property `machineType`
69
+ # @return [String]
70
+ attr_accessor :machine_type
71
+
72
+ # The names of the disks that were created for this pipeline.
73
+ # Corresponds to the JSON property `diskNames`
74
+ # @return [Array<String>]
75
+ attr_accessor :disk_names
76
+
77
+ def initialize(**args)
78
+ update!(**args)
79
+ end
80
+
81
+ # Update properties of this object
82
+ def update!(**args)
83
+ @instance_name = args[:instance_name] if args.key?(:instance_name)
84
+ @zone = args[:zone] if args.key?(:zone)
85
+ @machine_type = args[:machine_type] if args.key?(:machine_type)
86
+ @disk_names = args[:disk_names] if args.key?(:disk_names)
87
+ end
88
+ end
89
+
90
+ #
91
+ class ExternalId
92
+ include Google::Apis::Core::Hashable
93
+
94
+ # The name of the source of this data.
95
+ # Corresponds to the JSON property `sourceName`
96
+ # @return [String]
97
+ attr_accessor :source_name
98
+
99
+ # The id used by the source of this data.
100
+ # Corresponds to the JSON property `id`
101
+ # @return [String]
102
+ attr_accessor :id
103
+
104
+ def initialize(**args)
105
+ update!(**args)
106
+ end
107
+
108
+ # Update properties of this object
109
+ def update!(**args)
110
+ @source_name = args[:source_name] if args.key?(:source_name)
111
+ @id = args[:id] if args.key?(:id)
112
+ end
113
+ end
114
+
115
+ # A reference is a canonical assembled DNA sequence, intended to act as a
116
+ # reference coordinate space for other genomic annotations. A single reference
117
+ # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
118
+ # reference belongs to one or more reference sets.
119
+ # For more genomics resource definitions, see [Fundamentals of Google
120
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
121
+ class Reference
122
+ include Google::Apis::Core::Hashable
123
+
124
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
125
+ # Corresponds to the JSON property `ncbiTaxonId`
126
+ # @return [Fixnum]
127
+ attr_accessor :ncbi_taxon_id
128
+
129
+ # The URI from which the sequence was obtained. Typically specifies a FASTA
130
+ # format file.
131
+ # Corresponds to the JSON property `sourceUri`
132
+ # @return [String]
133
+ attr_accessor :source_uri
134
+
135
+ # The name of this reference, for example `22`.
136
+ # Corresponds to the JSON property `name`
137
+ # @return [String]
138
+ attr_accessor :name
139
+
140
+ # MD5 of the upper-case sequence excluding all whitespace characters (this
141
+ # is equivalent to SQ:M5 in SAM). This value is represented in lower case
142
+ # hexadecimal format.
143
+ # Corresponds to the JSON property `md5checksum`
144
+ # @return [String]
145
+ attr_accessor :md5checksum
146
+
147
+ # The server-generated reference ID, unique across all references.
148
+ # Corresponds to the JSON property `id`
149
+ # @return [String]
150
+ attr_accessor :id
151
+
152
+ # The length of this reference's sequence.
153
+ # Corresponds to the JSON property `length`
154
+ # @return [String]
155
+ attr_accessor :length
156
+
157
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
158
+ # with a version number, for example `GCF_000001405.26`.
159
+ # Corresponds to the JSON property `sourceAccessions`
160
+ # @return [Array<String>]
161
+ attr_accessor :source_accessions
162
+
163
+ def initialize(**args)
164
+ update!(**args)
165
+ end
166
+
167
+ # Update properties of this object
168
+ def update!(**args)
169
+ @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
170
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
171
+ @name = args[:name] if args.key?(:name)
172
+ @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
173
+ @id = args[:id] if args.key?(:id)
174
+ @length = args[:length] if args.key?(:length)
175
+ @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
176
+ end
177
+ end
178
+
179
+ # Metadata describes a single piece of variant call metadata.
180
+ # These data include a top level key and either a single value string (value)
181
+ # or a list of key-value pairs (info.)
182
+ # Value and info are mutually exclusive.
183
+ class VariantSetMetadata
184
+ include Google::Apis::Core::Hashable
185
+
186
+ # The number of values that can be included in a field described by this
187
+ # metadata.
188
+ # Corresponds to the JSON property `number`
189
+ # @return [String]
190
+ attr_accessor :number
191
+
192
+ # User-provided ID field, not enforced by this API.
193
+ # Two or more pieces of structured metadata with identical
194
+ # id and key fields are considered equivalent.
195
+ # Corresponds to the JSON property `id`
196
+ # @return [String]
197
+ attr_accessor :id
198
+
199
+ # The value field for simple metadata
200
+ # Corresponds to the JSON property `value`
201
+ # @return [String]
202
+ attr_accessor :value
203
+
204
+ # The top-level key.
205
+ # Corresponds to the JSON property `key`
206
+ # @return [String]
207
+ attr_accessor :key
208
+
209
+ # A textual description of this metadata.
210
+ # Corresponds to the JSON property `description`
211
+ # @return [String]
212
+ attr_accessor :description
213
+
214
+ # Remaining structured metadata key-value pairs. This must be of the form
215
+ # map<string, string[]> (string key mapping to a list of string values).
216
+ # Corresponds to the JSON property `info`
217
+ # @return [Hash<String,Array<Object>>]
218
+ attr_accessor :info
219
+
220
+ # The type of data. Possible types include: Integer, Float,
221
+ # Flag, Character, and String.
222
+ # Corresponds to the JSON property `type`
223
+ # @return [String]
224
+ attr_accessor :type
225
+
226
+ def initialize(**args)
227
+ update!(**args)
228
+ end
229
+
230
+ # Update properties of this object
231
+ def update!(**args)
232
+ @number = args[:number] if args.key?(:number)
233
+ @id = args[:id] if args.key?(:id)
234
+ @value = args[:value] if args.key?(:value)
235
+ @key = args[:key] if args.key?(:key)
236
+ @description = args[:description] if args.key?(:description)
237
+ @info = args[:info] if args.key?(:info)
238
+ @type = args[:type] if args.key?(:type)
239
+ end
240
+ end
241
+
242
+ # The search variant sets request.
243
+ class SearchVariantSetsRequest
244
+ include Google::Apis::Core::Hashable
245
+
246
+ # Exactly one dataset ID must be provided here. Only variant sets which
247
+ # belong to this dataset will be returned.
248
+ # Corresponds to the JSON property `datasetIds`
249
+ # @return [Array<String>]
250
+ attr_accessor :dataset_ids
251
+
252
+ # The continuation token, which is used to page through large result sets.
253
+ # To get the next page of results, set this parameter to the value of
254
+ # `nextPageToken` from the previous response.
255
+ # Corresponds to the JSON property `pageToken`
256
+ # @return [String]
257
+ attr_accessor :page_token
258
+
259
+ # The maximum number of results to return in a single page. If unspecified,
260
+ # defaults to 1024.
261
+ # Corresponds to the JSON property `pageSize`
262
+ # @return [Fixnum]
263
+ attr_accessor :page_size
264
+
265
+ def initialize(**args)
266
+ update!(**args)
267
+ end
268
+
269
+ # Update properties of this object
270
+ def update!(**args)
271
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
272
+ @page_token = args[:page_token] if args.key?(:page_token)
273
+ @page_size = args[:page_size] if args.key?(:page_size)
274
+ end
275
+ end
276
+
277
+ #
278
+ class SearchReferenceSetsRequest
279
+ include Google::Apis::Core::Hashable
280
+
281
+ # If present, return reference sets for which a substring of their
282
+ # `assemblyId` matches this string (case insensitive).
283
+ # Corresponds to the JSON property `assemblyId`
284
+ # @return [String]
285
+ attr_accessor :assembly_id
286
+
287
+ # If present, return reference sets for which the
288
+ # md5checksum matches exactly.
289
+ # Corresponds to the JSON property `md5checksums`
290
+ # @return [Array<String>]
291
+ attr_accessor :md5checksums
292
+
293
+ # If present, return reference sets for which a prefix of any of
294
+ # sourceAccessions
295
+ # match any of these strings. Accession numbers typically have a main number
296
+ # and a version, for example `NC_000001.11`.
297
+ # Corresponds to the JSON property `accessions`
298
+ # @return [Array<String>]
299
+ attr_accessor :accessions
300
+
301
+ # The continuation token, which is used to page through large result sets.
302
+ # To get the next page of results, set this parameter to the value of
303
+ # `nextPageToken` from the previous response.
304
+ # Corresponds to the JSON property `pageToken`
305
+ # @return [String]
306
+ attr_accessor :page_token
307
+
308
+ # The maximum number of results to return in a single page. If unspecified,
309
+ # defaults to 1024. The maximum value is 4096.
310
+ # Corresponds to the JSON property `pageSize`
311
+ # @return [Fixnum]
312
+ attr_accessor :page_size
313
+
314
+ def initialize(**args)
315
+ update!(**args)
316
+ end
317
+
318
+ # Update properties of this object
319
+ def update!(**args)
320
+ @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
321
+ @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
322
+ @accessions = args[:accessions] if args.key?(:accessions)
323
+ @page_token = args[:page_token] if args.key?(:page_token)
324
+ @page_size = args[:page_size] if args.key?(:page_size)
325
+ end
326
+ end
327
+
328
+ # Request message for `SetIamPolicy` method.
329
+ class SetIamPolicyRequest
330
+ include Google::Apis::Core::Hashable
331
+
332
+ # Defines an Identity and Access Management (IAM) policy. It is used to
333
+ # specify access control policies for Cloud Platform resources.
334
+ # A `Policy` consists of a list of `bindings`. A `Binding` binds a list of
335
+ # `members` to a `role`, where the members can be user accounts, Google groups,
336
+ # Google domains, and service accounts. A `role` is a named list of permissions
337
+ # defined by IAM.
338
+ # **Example**
339
+ # `
340
+ # "bindings": [
341
+ # `
342
+ # "role": "roles/owner",
343
+ # "members": [
344
+ # "user:mike@example.com",
345
+ # "group:admins@example.com",
346
+ # "domain:google.com",
347
+ # "serviceAccount:my-other-app@appspot.gserviceaccount.com",
348
+ # ]
349
+ # `,
350
+ # `
351
+ # "role": "roles/viewer",
352
+ # "members": ["user:sean@example.com"]
353
+ # `
354
+ # ]
355
+ # `
356
+ # For a description of IAM and its features, see the
357
+ # [IAM developer's guide](https://cloud.google.com/iam).
358
+ # Corresponds to the JSON property `policy`
359
+ # @return [Google::Apis::GenomicsV1::Policy]
360
+ attr_accessor :policy
361
+
362
+ def initialize(**args)
363
+ update!(**args)
364
+ end
365
+
366
+ # Update properties of this object
367
+ def update!(**args)
368
+ @policy = args[:policy] if args.key?(:policy)
369
+ end
370
+ end
371
+
372
+ #
373
+ class MergeVariantsRequest
374
+ include Google::Apis::Core::Hashable
375
+
376
+ # A mapping between info field keys and the InfoMergeOperations to
377
+ # be performed on them.
378
+ # Corresponds to the JSON property `infoMergeConfig`
379
+ # @return [Hash<String,String>]
380
+ attr_accessor :info_merge_config
381
+
382
+ # The destination variant set.
383
+ # Corresponds to the JSON property `variantSetId`
384
+ # @return [String]
385
+ attr_accessor :variant_set_id
386
+
387
+ # The variants to be merged with existing variants.
388
+ # Corresponds to the JSON property `variants`
389
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
390
+ attr_accessor :variants
391
+
392
+ def initialize(**args)
393
+ update!(**args)
394
+ end
395
+
396
+ # Update properties of this object
397
+ def update!(**args)
398
+ @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
399
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
400
+ @variants = args[:variants] if args.key?(:variants)
401
+ end
402
+ end
403
+
404
+ #
405
+ class BatchCreateAnnotationsRequest
406
+ include Google::Apis::Core::Hashable
407
+
408
+ # The annotations to be created. At most 4096 can be specified in a single
409
+ # request.
410
+ # Corresponds to the JSON property `annotations`
411
+ # @return [Array<Google::Apis::GenomicsV1::Annotation>]
412
+ attr_accessor :annotations
413
+
414
+ # A unique request ID which enables the server to detect duplicated requests.
415
+ # If provided, duplicated requests will result in the same response; if not
416
+ # provided, duplicated requests may result in duplicated data. For a given
417
+ # annotation set, callers should not reuse `request_id`s when writing
418
+ # different batches of annotations - behavior in this case is undefined.
419
+ # A common approach is to use a UUID. For batch jobs where worker crashes are
420
+ # a possibility, consider using some unique variant of a worker or run ID.
421
+ # Corresponds to the JSON property `requestId`
422
+ # @return [String]
423
+ attr_accessor :request_id
424
+
425
+ def initialize(**args)
426
+ update!(**args)
427
+ end
428
+
429
+ # Update properties of this object
430
+ def update!(**args)
431
+ @annotations = args[:annotations] if args.key?(:annotations)
432
+ @request_id = args[:request_id] if args.key?(:request_id)
433
+ end
434
+ end
435
+
436
+ # A read alignment describes a linear alignment of a string of DNA to a
437
+ # reference sequence, in addition to metadata
438
+ # about the fragment (the molecule of DNA sequenced) and the read (the bases
439
+ # which were read by the sequencer). A read is equivalent to a line in a SAM
440
+ # file. A read belongs to exactly one read group and exactly one
441
+ # read group set.
442
+ # For more genomics resource definitions, see [Fundamentals of Google
443
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
444
+ # ### Reverse-stranded reads
445
+ # Mapped reads (reads having a non-null `alignment`) can be aligned to either
446
+ # the forward or the reverse strand of their associated reference. Strandedness
447
+ # of a mapped read is encoded by `alignment.position.reverseStrand`.
448
+ # If we consider the reference to be a forward-stranded coordinate space of
449
+ # `[0, reference.length)` with `0` as the left-most position and
450
+ # `reference.length` as the right-most position, reads are always aligned left
451
+ # to right. That is, `alignment.position.position` always refers to the
452
+ # left-most reference coordinate and `alignment.cigar` describes the alignment
453
+ # of this read to the reference from left to right. All per-base fields such as
454
+ # `alignedSequence` and `alignedQuality` share this same left-to-right
455
+ # orientation; this is true of reads which are aligned to either strand. For
456
+ # reverse-stranded reads, this means that `alignedSequence` is the reverse
457
+ # complement of the bases that were originally reported by the sequencing
458
+ # machine.
459
+ # ### Generating a reference-aligned sequence string
460
+ # When interacting with mapped reads, it's often useful to produce a string
461
+ # representing the local alignment of the read to reference. The following
462
+ # pseudocode demonstrates one way of doing this:
463
+ # out = ""
464
+ # offset = 0
465
+ # for c in read.alignment.cigar `
466
+ # switch c.operation `
467
+ # case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
468
+ # out += read.alignedSequence[offset:offset+c.operationLength]
469
+ # offset += c.operationLength
470
+ # break
471
+ # case "CLIP_SOFT", "INSERT":
472
+ # offset += c.operationLength
473
+ # break
474
+ # case "PAD":
475
+ # out += repeat("*", c.operationLength)
476
+ # break
477
+ # case "DELETE":
478
+ # out += repeat("-", c.operationLength)
479
+ # break
480
+ # case "SKIP":
481
+ # out += repeat(" ", c.operationLength)
482
+ # break
483
+ # case "CLIP_HARD":
484
+ # break
485
+ # `
486
+ # `
487
+ # return out
488
+ # ### Converting to SAM's CIGAR string
489
+ # The following pseudocode generates a SAM CIGAR string from the
490
+ # `cigar` field. Note that this is a lossy conversion
491
+ # (`cigar.referenceSequence` is lost).
492
+ # cigarMap = `
493
+ # "ALIGNMENT_MATCH": "M",
494
+ # "INSERT": "I",
495
+ # "DELETE": "D",
496
+ # "SKIP": "N",
497
+ # "CLIP_SOFT": "S",
498
+ # "CLIP_HARD": "H",
499
+ # "PAD": "P",
500
+ # "SEQUENCE_MATCH": "=",
501
+ # "SEQUENCE_MISMATCH": "X",
502
+ # `
503
+ # cigarStr = ""
504
+ # for c in read.alignment.cigar `
505
+ # cigarStr += c.operationLength + cigarMap[c.operation]
506
+ # `
507
+ # return cigarStr
508
+ class Read
509
+ include Google::Apis::Core::Hashable
510
+
511
+ # The fragment is a PCR or optical duplicate (SAM flag 0x400).
512
+ # Corresponds to the JSON property `duplicateFragment`
513
+ # @return [Boolean]
514
+ attr_accessor :duplicate_fragment
515
+ alias_method :duplicate_fragment?, :duplicate_fragment
516
+
517
+ # The read number in sequencing. 0-based and less than numberReads. This
518
+ # field replaces SAM flag 0x40 and 0x80.
519
+ # Corresponds to the JSON property `readNumber`
520
+ # @return [Fixnum]
521
+ attr_accessor :read_number
522
+
523
+ # The ID of the read group this read belongs to. A read belongs to exactly
524
+ # one read group. This is a server-generated ID which is distinct from SAM's
525
+ # RG tag (for that value, see
526
+ # ReadGroup.name).
527
+ # Corresponds to the JSON property `readGroupId`
528
+ # @return [String]
529
+ attr_accessor :read_group_id
530
+
531
+ # The bases of the read sequence contained in this alignment record,
532
+ # **without CIGAR operations applied** (equivalent to SEQ in SAM).
533
+ # `alignedSequence` and `alignedQuality` may be
534
+ # shorter than the full read sequence and quality. This will occur if the
535
+ # alignment is part of a chimeric alignment, or if the read was trimmed. When
536
+ # this occurs, the CIGAR for this read will begin/end with a hard clip
537
+ # operator that will indicate the length of the excised sequence.
538
+ # Corresponds to the JSON property `alignedSequence`
539
+ # @return [String]
540
+ attr_accessor :aligned_sequence
541
+
542
+ # A map of additional read alignment information. This must be of the form
543
+ # map<string, string[]> (string key mapping to a list of string values).
544
+ # Corresponds to the JSON property `info`
545
+ # @return [Hash<String,Array<Object>>]
546
+ attr_accessor :info
547
+
548
+ # An abstraction for referring to a genomic position, in relation to some
549
+ # already known reference. For now, represents a genomic position as a
550
+ # reference name, a base number on that reference (0-based), and a
551
+ # determination of forward or reverse strand.
552
+ # Corresponds to the JSON property `nextMatePosition`
553
+ # @return [Google::Apis::GenomicsV1::Position]
554
+ attr_accessor :next_mate_position
555
+
556
+ # Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
557
+ # Supplementary alignments are used in the representation of a chimeric
558
+ # alignment. In a chimeric alignment, a read is split into multiple
559
+ # linear alignments that map to different reference contigs. The first
560
+ # linear alignment in the read will be designated as the representative
561
+ # alignment; the remaining linear alignments will be designated as
562
+ # supplementary alignments. These alignments may have different mapping
563
+ # quality scores. In each linear alignment in a chimeric alignment, the read
564
+ # will be hard clipped. The `alignedSequence` and
565
+ # `alignedQuality` fields in the alignment record will only
566
+ # represent the bases for its respective linear alignment.
567
+ # Corresponds to the JSON property `supplementaryAlignment`
568
+ # @return [Boolean]
569
+ attr_accessor :supplementary_alignment
570
+ alias_method :supplementary_alignment?, :supplementary_alignment
571
+
572
+ # The orientation and the distance between reads from the fragment are
573
+ # consistent with the sequencing protocol (SAM flag 0x2).
574
+ # Corresponds to the JSON property `properPlacement`
575
+ # @return [Boolean]
576
+ attr_accessor :proper_placement
577
+ alias_method :proper_placement?, :proper_placement
578
+
579
+ # The observed length of the fragment, equivalent to TLEN in SAM.
580
+ # Corresponds to the JSON property `fragmentLength`
581
+ # @return [Fixnum]
582
+ attr_accessor :fragment_length
583
+
584
+ # Whether this read did not pass filters, such as platform or vendor quality
585
+ # controls (SAM flag 0x200).
586
+ # Corresponds to the JSON property `failedVendorQualityChecks`
587
+ # @return [Boolean]
588
+ attr_accessor :failed_vendor_quality_checks
589
+ alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
590
+
591
+ # The quality of the read sequence contained in this alignment record
592
+ # (equivalent to QUAL in SAM).
593
+ # `alignedSequence` and `alignedQuality` may be shorter than the full read
594
+ # sequence and quality. This will occur if the alignment is part of a
595
+ # chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
596
+ # for this read will begin/end with a hard clip operator that will indicate
597
+ # the length of the excised sequence.
598
+ # Corresponds to the JSON property `alignedQuality`
599
+ # @return [Array<Fixnum>]
600
+ attr_accessor :aligned_quality
601
+
602
+ # A linear alignment can be represented by one CIGAR string. Describes the
603
+ # mapped position and local alignment of the read to the reference.
604
+ # Corresponds to the JSON property `alignment`
605
+ # @return [Google::Apis::GenomicsV1::LinearAlignment]
606
+ attr_accessor :alignment
607
+
608
+ # The number of reads in the fragment (extension to SAM flag 0x1).
609
+ # Corresponds to the JSON property `numberReads`
610
+ # @return [Fixnum]
611
+ attr_accessor :number_reads
612
+
613
+ # The server-generated read ID, unique across all reads. This is different
614
+ # from the `fragmentName`.
615
+ # Corresponds to the JSON property `id`
616
+ # @return [String]
617
+ attr_accessor :id
618
+
619
+ # Whether this alignment is secondary. Equivalent to SAM flag 0x100.
620
+ # A secondary alignment represents an alternative to the primary alignment
621
+ # for this read. Aligners may return secondary alignments if a read can map
622
+ # ambiguously to multiple coordinates in the genome. By convention, each read
623
+ # has one and only one alignment where both `secondaryAlignment`
624
+ # and `supplementaryAlignment` are false.
625
+ # Corresponds to the JSON property `secondaryAlignment`
626
+ # @return [Boolean]
627
+ attr_accessor :secondary_alignment
628
+ alias_method :secondary_alignment?, :secondary_alignment
629
+
630
+ # The fragment name. Equivalent to QNAME (query template name) in SAM.
631
+ # Corresponds to the JSON property `fragmentName`
632
+ # @return [String]
633
+ attr_accessor :fragment_name
634
+
635
+ # The ID of the read group set this read belongs to. A read belongs to
636
+ # exactly one read group set.
637
+ # Corresponds to the JSON property `readGroupSetId`
638
+ # @return [String]
639
+ attr_accessor :read_group_set_id
640
+
641
+ def initialize(**args)
642
+ update!(**args)
643
+ end
644
+
645
+ # Update properties of this object
646
+ def update!(**args)
647
+ @duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
648
+ @read_number = args[:read_number] if args.key?(:read_number)
649
+ @read_group_id = args[:read_group_id] if args.key?(:read_group_id)
650
+ @aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
651
+ @info = args[:info] if args.key?(:info)
652
+ @next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
653
+ @supplementary_alignment = args[:supplementary_alignment] if args.key?(:supplementary_alignment)
654
+ @proper_placement = args[:proper_placement] if args.key?(:proper_placement)
655
+ @fragment_length = args[:fragment_length] if args.key?(:fragment_length)
656
+ @failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
657
+ @aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
658
+ @alignment = args[:alignment] if args.key?(:alignment)
659
+ @number_reads = args[:number_reads] if args.key?(:number_reads)
660
+ @id = args[:id] if args.key?(:id)
661
+ @secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
662
+ @fragment_name = args[:fragment_name] if args.key?(:fragment_name)
663
+ @read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
664
+ end
665
+ end
666
+
667
+ # A reference set is a set of references which typically comprise a reference
668
+ # assembly for a species, such as `GRCh38` which is representative
669
+ # of the human genome. A reference set defines a common coordinate space for
670
+ # comparing reference-aligned experimental data. A reference set contains 1 or
671
+ # more references.
672
+ # For more genomics resource definitions, see [Fundamentals of Google
673
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
674
+ class ReferenceSet
675
+ include Google::Apis::Core::Hashable
676
+
677
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
678
+ # with a version number, for example `NC_000001.11`.
679
+ # Corresponds to the JSON property `sourceAccessions`
680
+ # @return [Array<String>]
681
+ attr_accessor :source_accessions
682
+
683
+ # Free text description of this reference set.
684
+ # Corresponds to the JSON property `description`
685
+ # @return [String]
686
+ attr_accessor :description
687
+
688
+ # The URI from which the references were obtained.
689
+ # Corresponds to the JSON property `sourceUri`
690
+ # @return [String]
691
+ attr_accessor :source_uri
692
+
693
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
694
+ # indicating the species which this reference set is intended to model. Note
695
+ # that contained references may specify a different `ncbiTaxonId`, as
696
+ # assemblies may contain reference sequences which do not belong to the
697
+ # modeled species, for example EBV in a human reference genome.
698
+ # Corresponds to the JSON property `ncbiTaxonId`
699
+ # @return [Fixnum]
700
+ attr_accessor :ncbi_taxon_id
701
+
702
+ # The IDs of the reference objects that are part of this set.
703
+ # `Reference.md5checksum` must be unique within this set.
704
+ # Corresponds to the JSON property `referenceIds`
705
+ # @return [Array<String>]
706
+ attr_accessor :reference_ids
707
+
708
+ # Public id of this reference set, such as `GRCh37`.
709
+ # Corresponds to the JSON property `assemblyId`
710
+ # @return [String]
711
+ attr_accessor :assembly_id
712
+
713
+ # Order-independent MD5 checksum which identifies this reference set. The
714
+ # checksum is computed by sorting all lower case hexidecimal string
715
+ # `reference.md5checksum` (for all reference in this set) in
716
+ # ascending lexicographic order, concatenating, and taking the MD5 of that
717
+ # value. The resulting value is represented in lower case hexadecimal format.
718
+ # Corresponds to the JSON property `md5checksum`
719
+ # @return [String]
720
+ attr_accessor :md5checksum
721
+
722
+ # The server-generated reference set ID, unique across all reference sets.
723
+ # Corresponds to the JSON property `id`
724
+ # @return [String]
725
+ attr_accessor :id
726
+
727
+ def initialize(**args)
728
+ update!(**args)
729
+ end
730
+
731
+ # Update properties of this object
732
+ def update!(**args)
733
+ @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
734
+ @description = args[:description] if args.key?(:description)
735
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
736
+ @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
737
+ @reference_ids = args[:reference_ids] if args.key?(:reference_ids)
738
+ @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
739
+ @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
740
+ @id = args[:id] if args.key?(:id)
741
+ end
742
+ end
743
+
744
+ # A single CIGAR operation.
745
+ class CigarUnit
746
+ include Google::Apis::Core::Hashable
747
+
748
+ # `referenceSequence` is only used at mismatches
749
+ # (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
750
+ # Filling this field replaces SAM's MD tag. If the relevant information is
751
+ # not available, this field is unset.
752
+ # Corresponds to the JSON property `referenceSequence`
753
+ # @return [String]
754
+ attr_accessor :reference_sequence
755
+
756
+ # The number of genomic bases that the operation runs for. Required.
757
+ # Corresponds to the JSON property `operationLength`
758
+ # @return [String]
759
+ attr_accessor :operation_length
760
+
761
+ #
762
+ # Corresponds to the JSON property `operation`
763
+ # @return [String]
764
+ attr_accessor :operation
765
+
766
+ def initialize(**args)
767
+ update!(**args)
768
+ end
769
+
770
+ # Update properties of this object
771
+ def update!(**args)
772
+ @reference_sequence = args[:reference_sequence] if args.key?(:reference_sequence)
773
+ @operation_length = args[:operation_length] if args.key?(:operation_length)
774
+ @operation = args[:operation] if args.key?(:operation)
775
+ end
776
+ end
777
+
778
+ # An annotation set is a logical grouping of annotations that share consistent
779
+ # type information and provenance. Examples of annotation sets include 'all
780
+ # genes from refseq', and 'all variant annotations from ClinVar'.
781
+ class AnnotationSet
782
+ include Google::Apis::Core::Hashable
783
+
784
+ # The dataset to which this annotation set belongs.
785
+ # Corresponds to the JSON property `datasetId`
786
+ # @return [String]
787
+ attr_accessor :dataset_id
788
+
789
+ # The source URI describing the file from which this annotation set was
790
+ # generated, if any.
791
+ # Corresponds to the JSON property `sourceUri`
792
+ # @return [String]
793
+ attr_accessor :source_uri
794
+
795
+ # The display name for this annotation set.
796
+ # Corresponds to the JSON property `name`
797
+ # @return [String]
798
+ attr_accessor :name
799
+
800
+ # The ID of the reference set that defines the coordinate space for this
801
+ # set's annotations.
802
+ # Corresponds to the JSON property `referenceSetId`
803
+ # @return [String]
804
+ attr_accessor :reference_set_id
805
+
806
+ # A map of additional read alignment information. This must be of the form
807
+ # map<string, string[]> (string key mapping to a list of string values).
808
+ # Corresponds to the JSON property `info`
809
+ # @return [Hash<String,Array<Object>>]
810
+ attr_accessor :info
811
+
812
+ # The type of annotations contained within this set.
813
+ # Corresponds to the JSON property `type`
814
+ # @return [String]
815
+ attr_accessor :type
816
+
817
+ # The server-generated annotation set ID, unique across all annotation sets.
818
+ # Corresponds to the JSON property `id`
819
+ # @return [String]
820
+ attr_accessor :id
821
+
822
+ def initialize(**args)
823
+ update!(**args)
824
+ end
825
+
826
+ # Update properties of this object
827
+ def update!(**args)
828
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
829
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
830
+ @name = args[:name] if args.key?(:name)
831
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
832
+ @info = args[:info] if args.key?(:info)
833
+ @type = args[:type] if args.key?(:type)
834
+ @id = args[:id] if args.key?(:id)
835
+ end
836
+ end
837
+
838
+ # A transcript represents the assertion that a particular region of the
839
+ # reference genome may be transcribed as RNA.
840
+ class Transcript
841
+ include Google::Apis::Core::Hashable
842
+
843
+ # The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
844
+ # this transcript. This field should be unset for genomes where transcript
845
+ # splicing does not occur, for example prokaryotes.
846
+ # Introns are regions of the transcript that are not included in the
847
+ # spliced RNA product. Though not explicitly modeled here, intron ranges can
848
+ # be deduced; all regions of this transcript that are not exons are introns.
849
+ # Exonic sequences do not necessarily code for a translational product
850
+ # (amino acids). Only the regions of exons bounded by the
851
+ # codingSequence correspond
852
+ # to coding DNA sequence.
853
+ # Exons are ordered by start position and may not overlap.
854
+ # Corresponds to the JSON property `exons`
855
+ # @return [Array<Google::Apis::GenomicsV1::Exon>]
856
+ attr_accessor :exons
857
+
858
+ # The range of the coding sequence for this transcript, if any. To determine
859
+ # the exact ranges of coding sequence, intersect this range with those of the
860
+ # exons, if any. If there are any
861
+ # exons, the
862
+ # codingSequence must start
863
+ # and end within them.
864
+ # Note that in some cases, the reference genome will not exactly match the
865
+ # observed mRNA transcript e.g. due to variance in the source genome from
866
+ # reference. In these cases,
867
+ # exon.frame will not necessarily
868
+ # match the expected reference reading frame and coding exon reference bases
869
+ # cannot necessarily be concatenated to produce the original transcript mRNA.
870
+ # Corresponds to the JSON property `codingSequence`
871
+ # @return [Google::Apis::GenomicsV1::CodingSequence]
872
+ attr_accessor :coding_sequence
873
+
874
+ # The annotation ID of the gene from which this transcript is transcribed.
875
+ # Corresponds to the JSON property `geneId`
876
+ # @return [String]
877
+ attr_accessor :gene_id
878
+
879
+ def initialize(**args)
880
+ update!(**args)
881
+ end
882
+
883
+ # Update properties of this object
884
+ def update!(**args)
885
+ @exons = args[:exons] if args.key?(:exons)
886
+ @coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
887
+ @gene_id = args[:gene_id] if args.key?(:gene_id)
888
+ end
889
+ end
890
+
891
+ #
892
+ class Experiment
893
+ include Google::Apis::Core::Hashable
894
+
895
+ # The platform unit used as part of this experiment, for example
896
+ # flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
897
+ # @RG PU field in the SAM spec.
898
+ # Corresponds to the JSON property `platformUnit`
899
+ # @return [String]
900
+ attr_accessor :platform_unit
901
+
902
+ # A client-supplied library identifier; a library is a collection of DNA
903
+ # fragments which have been prepared for sequencing from a sample. This
904
+ # field is important for quality control as error or bias can be introduced
905
+ # during sample preparation.
906
+ # Corresponds to the JSON property `libraryId`
907
+ # @return [String]
908
+ attr_accessor :library_id
909
+
910
+ # The instrument model used as part of this experiment. This maps to
911
+ # sequencing technology in the SAM spec.
912
+ # Corresponds to the JSON property `instrumentModel`
913
+ # @return [String]
914
+ attr_accessor :instrument_model
915
+
916
+ # The sequencing center used as part of this experiment.
917
+ # Corresponds to the JSON property `sequencingCenter`
918
+ # @return [String]
919
+ attr_accessor :sequencing_center
920
+
921
+ def initialize(**args)
922
+ update!(**args)
923
+ end
924
+
925
+ # Update properties of this object
926
+ def update!(**args)
927
+ @platform_unit = args[:platform_unit] if args.key?(:platform_unit)
928
+ @library_id = args[:library_id] if args.key?(:library_id)
929
+ @instrument_model = args[:instrument_model] if args.key?(:instrument_model)
930
+ @sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
931
+ end
932
+ end
933
+
934
+ # The dataset list response.
935
+ class ListDatasetsResponse
936
+ include Google::Apis::Core::Hashable
937
+
938
+ # The list of matching Datasets.
939
+ # Corresponds to the JSON property `datasets`
940
+ # @return [Array<Google::Apis::GenomicsV1::Dataset>]
941
+ attr_accessor :datasets
942
+
943
+ # The continuation token, which is used to page through large result sets.
944
+ # Provide this value in a subsequent request to return the next page of
945
+ # results. This field will be empty if there aren't any additional results.
946
+ # Corresponds to the JSON property `nextPageToken`
947
+ # @return [String]
948
+ attr_accessor :next_page_token
949
+
950
+ def initialize(**args)
951
+ update!(**args)
952
+ end
953
+
954
+ # Update properties of this object
955
+ def update!(**args)
956
+ @datasets = args[:datasets] if args.key?(:datasets)
957
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
958
+ end
959
+ end
960
+
961
+ # Request message for `TestIamPermissions` method.
962
+ class TestIamPermissionsRequest
963
+ include Google::Apis::Core::Hashable
964
+
965
+ # REQUIRED: The set of permissions to check for the 'resource'.
966
+ # Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
967
+ # Allowed permissions are&#58;
968
+ # * `genomics.datasets.create`
969
+ # * `genomics.datasets.delete`
970
+ # * `genomics.datasets.get`
971
+ # * `genomics.datasets.list`
972
+ # * `genomics.datasets.update`
973
+ # * `genomics.datasets.getIamPolicy`
974
+ # * `genomics.datasets.setIamPolicy`
975
+ # Corresponds to the JSON property `permissions`
976
+ # @return [Array<String>]
977
+ attr_accessor :permissions
978
+
979
+ def initialize(**args)
980
+ update!(**args)
981
+ end
982
+
983
+ # Update properties of this object
984
+ def update!(**args)
985
+ @permissions = args[:permissions] if args.key?(:permissions)
986
+ end
987
+ end
988
+
989
+ # The read group set export request.
990
+ class ExportReadGroupSetRequest
991
+ include Google::Apis::Core::Hashable
992
+
993
+ # Required. A Google Cloud Storage URI for the exported BAM file.
994
+ # The currently authenticated user must have write access to the new file.
995
+ # An error will be returned if the URI already contains data.
996
+ # Corresponds to the JSON property `exportUri`
997
+ # @return [String]
998
+ attr_accessor :export_uri
999
+
1000
+ # The reference names to export. If this is not specified, all reference
1001
+ # sequences, including unmapped reads, are exported.
1002
+ # Use `*` to export only unmapped reads.
1003
+ # Corresponds to the JSON property `referenceNames`
1004
+ # @return [Array<String>]
1005
+ attr_accessor :reference_names
1006
+
1007
+ # Required. The Google Cloud project ID that owns this
1008
+ # export. The caller must have WRITE access to this project.
1009
+ # Corresponds to the JSON property `projectId`
1010
+ # @return [String]
1011
+ attr_accessor :project_id
1012
+
1013
+ def initialize(**args)
1014
+ update!(**args)
1015
+ end
1016
+
1017
+ # Update properties of this object
1018
+ def update!(**args)
1019
+ @export_uri = args[:export_uri] if args.key?(:export_uri)
1020
+ @reference_names = args[:reference_names] if args.key?(:reference_names)
1021
+ @project_id = args[:project_id] if args.key?(:project_id)
1022
+ end
1023
+ end
1024
+
1025
+ #
1026
+ class Exon
1027
+ include Google::Apis::Core::Hashable
1028
+
1029
+ # The start position of the exon on this annotation's reference sequence,
1030
+ # 0-based inclusive. Note that this is relative to the reference start, and
1031
+ # **not** the containing annotation start.
1032
+ # Corresponds to the JSON property `start`
1033
+ # @return [String]
1034
+ attr_accessor :start
1035
+
1036
+ # The end position of the exon on this annotation's reference sequence,
1037
+ # 0-based exclusive. Note that this is relative to the reference start, and
1038
+ # *not* the containing annotation start.
1039
+ # Corresponds to the JSON property `end`
1040
+ # @return [String]
1041
+ attr_accessor :end
1042
+
1043
+ # The frame of this exon. Contains a value of 0, 1, or 2, which indicates
1044
+ # the offset of the first coding base of the exon within the reading frame
1045
+ # of the coding DNA sequence, if any. This field is dependent on the
1046
+ # strandedness of this annotation (see
1047
+ # Annotation.reverse_strand).
1048
+ # For forward stranded annotations, this offset is relative to the
1049
+ # exon.start. For reverse
1050
+ # strand annotations, this offset is relative to the
1051
+ # exon.end `- 1`.
1052
+ # Unset if this exon does not intersect the coding sequence. Upon creation
1053
+ # of a transcript, the frame must be populated for all or none of the
1054
+ # coding exons.
1055
+ # Corresponds to the JSON property `frame`
1056
+ # @return [Fixnum]
1057
+ attr_accessor :frame
1058
+
1059
+ def initialize(**args)
1060
+ update!(**args)
1061
+ end
1062
+
1063
+ # Update properties of this object
1064
+ def update!(**args)
1065
+ @start = args[:start] if args.key?(:start)
1066
+ @end = args[:end] if args.key?(:end)
1067
+ @frame = args[:frame] if args.key?(:frame)
1068
+ end
1069
+ end
1070
+
1071
+ # A call set is a collection of variant calls, typically for one sample. It
1072
+ # belongs to a variant set.
1073
+ # For more genomics resource definitions, see [Fundamentals of Google
1074
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1075
+ class CallSet
1076
+ include Google::Apis::Core::Hashable
1077
+
1078
+ # The date this call set was created in milliseconds from the epoch.
1079
+ # Corresponds to the JSON property `created`
1080
+ # @return [String]
1081
+ attr_accessor :created
1082
+
1083
+ # The sample ID this call set corresponds to.
1084
+ # Corresponds to the JSON property `sampleId`
1085
+ # @return [String]
1086
+ attr_accessor :sample_id
1087
+
1088
+ # The call set name.
1089
+ # Corresponds to the JSON property `name`
1090
+ # @return [String]
1091
+ attr_accessor :name
1092
+
1093
+ # A map of additional call set information. This must be of the form
1094
+ # map<string, string[]> (string key mapping to a list of string values).
1095
+ # Corresponds to the JSON property `info`
1096
+ # @return [Hash<String,Array<Object>>]
1097
+ attr_accessor :info
1098
+
1099
+ # The IDs of the variant sets this call set belongs to. This field must
1100
+ # have exactly length one, as a call set belongs to a single variant set.
1101
+ # This field is repeated for compatibility with the
1102
+ # [GA4GH 0.5.1
1103
+ # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/
1104
+ # variants.avdl#L76).
1105
+ # Corresponds to the JSON property `variantSetIds`
1106
+ # @return [Array<String>]
1107
+ attr_accessor :variant_set_ids
1108
+
1109
+ # The server-generated call set ID, unique across all call sets.
1110
+ # Corresponds to the JSON property `id`
1111
+ # @return [String]
1112
+ attr_accessor :id
1113
+
1114
+ def initialize(**args)
1115
+ update!(**args)
1116
+ end
1117
+
1118
+ # Update properties of this object
1119
+ def update!(**args)
1120
+ @created = args[:created] if args.key?(:created)
1121
+ @sample_id = args[:sample_id] if args.key?(:sample_id)
1122
+ @name = args[:name] if args.key?(:name)
1123
+ @info = args[:info] if args.key?(:info)
1124
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
1125
+ @id = args[:id] if args.key?(:id)
1126
+ end
1127
+ end
1128
+
1129
+ #
1130
+ class SearchAnnotationSetsResponse
1131
+ include Google::Apis::Core::Hashable
1132
+
1133
+ # The matching annotation sets.
1134
+ # Corresponds to the JSON property `annotationSets`
1135
+ # @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
1136
+ attr_accessor :annotation_sets
1137
+
1138
+ # The continuation token, which is used to page through large result sets.
1139
+ # Provide this value in a subsequent request to return the next page of
1140
+ # results. This field will be empty if there aren't any additional results.
1141
+ # Corresponds to the JSON property `nextPageToken`
1142
+ # @return [String]
1143
+ attr_accessor :next_page_token
1144
+
1145
+ def initialize(**args)
1146
+ update!(**args)
1147
+ end
1148
+
1149
+ # Update properties of this object
1150
+ def update!(**args)
1151
+ @annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
1152
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1153
+ end
1154
+ end
1155
+
1156
+ # The variant data import request.
1157
+ class ImportVariantsRequest
1158
+ include Google::Apis::Core::Hashable
1159
+
1160
+ # A mapping between info field keys and the InfoMergeOperations to
1161
+ # be performed on them. This is plumbed down to the MergeVariantRequests
1162
+ # generated by the resulting import job.
1163
+ # Corresponds to the JSON property `infoMergeConfig`
1164
+ # @return [Hash<String,String>]
1165
+ attr_accessor :info_merge_config
1166
+
1167
+ # Required. The variant set to which variant data should be imported.
1168
+ # Corresponds to the JSON property `variantSetId`
1169
+ # @return [String]
1170
+ attr_accessor :variant_set_id
1171
+
1172
+ # A list of URIs referencing variant files in Google Cloud Storage. URIs can
1173
+ # include wildcards [as described
1174
+ # here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
1175
+ # Note that recursive wildcards ('**') are not supported.
1176
+ # Corresponds to the JSON property `sourceUris`
1177
+ # @return [Array<String>]
1178
+ attr_accessor :source_uris
1179
+
1180
+ # Convert reference names to the canonical representation.
1181
+ # hg19 haploytypes (those reference names containing "_hap")
1182
+ # are not modified in any way.
1183
+ # All other reference names are modified according to the following rules:
1184
+ # The reference name is capitalized.
1185
+ # The "chr" prefix is dropped for all autosomes and sex chromsomes.
1186
+ # For example "chr17" becomes "17" and "chrX" becomes "X".
1187
+ # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
1188
+ # Corresponds to the JSON property `normalizeReferenceNames`
1189
+ # @return [Boolean]
1190
+ attr_accessor :normalize_reference_names
1191
+ alias_method :normalize_reference_names?, :normalize_reference_names
1192
+
1193
+ # The format of the variant data being imported. If unspecified, defaults to
1194
+ # to `VCF`.
1195
+ # Corresponds to the JSON property `format`
1196
+ # @return [String]
1197
+ attr_accessor :format
1198
+
1199
+ def initialize(**args)
1200
+ update!(**args)
1201
+ end
1202
+
1203
+ # Update properties of this object
1204
+ def update!(**args)
1205
+ @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1206
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1207
+ @source_uris = args[:source_uris] if args.key?(:source_uris)
1208
+ @normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
1209
+ @format = args[:format] if args.key?(:format)
1210
+ end
1211
+ end
1212
+
1213
+ #
1214
+ class VariantAnnotation
1215
+ include Google::Apis::Core::Hashable
1216
+
1217
+ # The set of conditions associated with this variant.
1218
+ # A condition describes the way a variant influences human health.
1219
+ # Corresponds to the JSON property `conditions`
1220
+ # @return [Array<Google::Apis::GenomicsV1::ClinicalCondition>]
1221
+ attr_accessor :conditions
1222
+
1223
+ # Effect of the variant on the coding sequence.
1224
+ # Corresponds to the JSON property `effect`
1225
+ # @return [String]
1226
+ attr_accessor :effect
1227
+
1228
+ # Google annotation IDs of the transcripts affected by this variant. These
1229
+ # should be provided when the variant is created.
1230
+ # Corresponds to the JSON property `transcriptIds`
1231
+ # @return [Array<String>]
1232
+ attr_accessor :transcript_ids
1233
+
1234
+ # Type has been adapted from ClinVar's list of variant types.
1235
+ # Corresponds to the JSON property `type`
1236
+ # @return [String]
1237
+ attr_accessor :type
1238
+
1239
+ # The alternate allele for this variant. If multiple alternate alleles
1240
+ # exist at this location, create a separate variant for each one, as they
1241
+ # may represent distinct conditions.
1242
+ # Corresponds to the JSON property `alternateBases`
1243
+ # @return [String]
1244
+ attr_accessor :alternate_bases
1245
+
1246
+ # Google annotation ID of the gene affected by this variant. This should
1247
+ # be provided when the variant is created.
1248
+ # Corresponds to the JSON property `geneId`
1249
+ # @return [String]
1250
+ attr_accessor :gene_id
1251
+
1252
+ # Describes the clinical significance of a variant.
1253
+ # It is adapted from the ClinVar controlled vocabulary for clinical
1254
+ # significance described at:
1255
+ # http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
1256
+ # Corresponds to the JSON property `clinicalSignificance`
1257
+ # @return [String]
1258
+ attr_accessor :clinical_significance
1259
+
1260
+ def initialize(**args)
1261
+ update!(**args)
1262
+ end
1263
+
1264
+ # Update properties of this object
1265
+ def update!(**args)
1266
+ @conditions = args[:conditions] if args.key?(:conditions)
1267
+ @effect = args[:effect] if args.key?(:effect)
1268
+ @transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids)
1269
+ @type = args[:type] if args.key?(:type)
1270
+ @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
1271
+ @gene_id = args[:gene_id] if args.key?(:gene_id)
1272
+ @clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance)
1273
+ end
1274
+ end
1275
+
1276
+ #
1277
+ class ListCoverageBucketsResponse
1278
+ include Google::Apis::Core::Hashable
1279
+
1280
+ # The length of each coverage bucket in base pairs. Note that buckets at the
1281
+ # end of a reference sequence may be shorter. This value is omitted if the
1282
+ # bucket width is infinity (the default behaviour, with no range or
1283
+ # `targetBucketWidth`).
1284
+ # Corresponds to the JSON property `bucketWidth`
1285
+ # @return [String]
1286
+ attr_accessor :bucket_width
1287
+
1288
+ # The coverage buckets. The list of buckets is sparse; a bucket with 0
1289
+ # overlapping reads is not returned. A bucket never crosses more than one
1290
+ # reference sequence. Each bucket has width `bucketWidth`, unless
1291
+ # its end is the end of the reference sequence.
1292
+ # Corresponds to the JSON property `coverageBuckets`
1293
+ # @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
1294
+ attr_accessor :coverage_buckets
1295
+
1296
+ # The continuation token, which is used to page through large result sets.
1297
+ # Provide this value in a subsequent request to return the next page of
1298
+ # results. This field will be empty if there aren't any additional results.
1299
+ # Corresponds to the JSON property `nextPageToken`
1300
+ # @return [String]
1301
+ attr_accessor :next_page_token
1302
+
1303
+ def initialize(**args)
1304
+ update!(**args)
1305
+ end
1306
+
1307
+ # Update properties of this object
1308
+ def update!(**args)
1309
+ @bucket_width = args[:bucket_width] if args.key?(:bucket_width)
1310
+ @coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
1311
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1312
+ end
1313
+ end
1314
+
1315
+ # The variant data export request.
1316
+ class ExportVariantSetRequest
1317
+ include Google::Apis::Core::Hashable
1318
+
1319
+ # The format for the exported data.
1320
+ # Corresponds to the JSON property `format`
1321
+ # @return [String]
1322
+ attr_accessor :format
1323
+
1324
+ # Required. The BigQuery dataset to export data to. This dataset must already
1325
+ # exist. Note that this is distinct from the Genomics concept of "dataset".
1326
+ # Corresponds to the JSON property `bigqueryDataset`
1327
+ # @return [String]
1328
+ attr_accessor :bigquery_dataset
1329
+
1330
+ # Required. The BigQuery table to export data to.
1331
+ # If the table doesn't exist, it will be created. If it already exists, it
1332
+ # will be overwritten.
1333
+ # Corresponds to the JSON property `bigqueryTable`
1334
+ # @return [String]
1335
+ attr_accessor :bigquery_table
1336
+
1337
+ # If provided, only variant call information from the specified call sets
1338
+ # will be exported. By default all variant calls are exported.
1339
+ # Corresponds to the JSON property `callSetIds`
1340
+ # @return [Array<String>]
1341
+ attr_accessor :call_set_ids
1342
+
1343
+ # Required. The Google Cloud project ID that owns the destination
1344
+ # BigQuery dataset. The caller must have WRITE access to this project. This
1345
+ # project will also own the resulting export job.
1346
+ # Corresponds to the JSON property `projectId`
1347
+ # @return [String]
1348
+ attr_accessor :project_id
1349
+
1350
+ def initialize(**args)
1351
+ update!(**args)
1352
+ end
1353
+
1354
+ # Update properties of this object
1355
+ def update!(**args)
1356
+ @format = args[:format] if args.key?(:format)
1357
+ @bigquery_dataset = args[:bigquery_dataset] if args.key?(:bigquery_dataset)
1358
+ @bigquery_table = args[:bigquery_table] if args.key?(:bigquery_table)
1359
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1360
+ @project_id = args[:project_id] if args.key?(:project_id)
1361
+ end
1362
+ end
1363
+
1364
+ #
1365
+ class SearchAnnotationsRequest
1366
+ include Google::Apis::Core::Hashable
1367
+
1368
+ # The continuation token, which is used to page through large result sets.
1369
+ # To get the next page of results, set this parameter to the value of
1370
+ # `nextPageToken` from the previous response.
1371
+ # Corresponds to the JSON property `pageToken`
1372
+ # @return [String]
1373
+ attr_accessor :page_token
1374
+
1375
+ # The maximum number of results to return in a single page. If unspecified,
1376
+ # defaults to 256. The maximum value is 2048.
1377
+ # Corresponds to the JSON property `pageSize`
1378
+ # @return [Fixnum]
1379
+ attr_accessor :page_size
1380
+
1381
+ # The start position of the range on the reference, 0-based inclusive. If
1382
+ # specified,
1383
+ # referenceId or
1384
+ # referenceName
1385
+ # must be specified. Defaults to 0.
1386
+ # Corresponds to the JSON property `start`
1387
+ # @return [String]
1388
+ attr_accessor :start
1389
+
1390
+ # Required. The annotation sets to search within. The caller must have
1391
+ # `READ` access to these annotation sets.
1392
+ # All queried annotation sets must have the same type.
1393
+ # Corresponds to the JSON property `annotationSetIds`
1394
+ # @return [Array<String>]
1395
+ attr_accessor :annotation_set_ids
1396
+
1397
+ # The name of the reference to query, within the reference set associated
1398
+ # with this query.
1399
+ # Corresponds to the JSON property `referenceName`
1400
+ # @return [String]
1401
+ attr_accessor :reference_name
1402
+
1403
+ # The ID of the reference to query.
1404
+ # Corresponds to the JSON property `referenceId`
1405
+ # @return [String]
1406
+ attr_accessor :reference_id
1407
+
1408
+ # The end position of the range on the reference, 0-based exclusive. If
1409
+ # referenceId or
1410
+ # referenceName
1411
+ # must be specified, Defaults to the length of the reference.
1412
+ # Corresponds to the JSON property `end`
1413
+ # @return [String]
1414
+ attr_accessor :end
1415
+
1416
+ def initialize(**args)
1417
+ update!(**args)
1418
+ end
1419
+
1420
+ # Update properties of this object
1421
+ def update!(**args)
1422
+ @page_token = args[:page_token] if args.key?(:page_token)
1423
+ @page_size = args[:page_size] if args.key?(:page_size)
1424
+ @start = args[:start] if args.key?(:start)
1425
+ @annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
1426
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
1427
+ @reference_id = args[:reference_id] if args.key?(:reference_id)
1428
+ @end = args[:end] if args.key?(:end)
1429
+ end
1430
+ end
1431
+
1432
+ # An event that occurred during an Operation.
1433
+ class OperationEvent
1434
+ include Google::Apis::Core::Hashable
1435
+
1436
+ # Optional time of when event finished. An event can have a start time and no
1437
+ # finish time. If an event has a finish time, there must be a start time.
1438
+ # Corresponds to the JSON property `endTime`
1439
+ # @return [String]
1440
+ attr_accessor :end_time
1441
+
1442
+ # Optional time of when event started.
1443
+ # Corresponds to the JSON property `startTime`
1444
+ # @return [String]
1445
+ attr_accessor :start_time
1446
+
1447
+ # Required description of event.
1448
+ # Corresponds to the JSON property `description`
1449
+ # @return [String]
1450
+ attr_accessor :description
1451
+
1452
+ def initialize(**args)
1453
+ update!(**args)
1454
+ end
1455
+
1456
+ # Update properties of this object
1457
+ def update!(**args)
1458
+ @end_time = args[:end_time] if args.key?(:end_time)
1459
+ @start_time = args[:start_time] if args.key?(:start_time)
1460
+ @description = args[:description] if args.key?(:description)
1461
+ end
1462
+ end
1463
+
1464
+ #
1465
+ class CodingSequence
1466
+ include Google::Apis::Core::Hashable
1467
+
1468
+ # The start of the coding sequence on this annotation's reference sequence,
1469
+ # 0-based inclusive. Note that this position is relative to the reference
1470
+ # start, and *not* the containing annotation start.
1471
+ # Corresponds to the JSON property `start`
1472
+ # @return [String]
1473
+ attr_accessor :start
1474
+
1475
+ # The end of the coding sequence on this annotation's reference sequence,
1476
+ # 0-based exclusive. Note that this position is relative to the reference
1477
+ # start, and *not* the containing annotation start.
1478
+ # Corresponds to the JSON property `end`
1479
+ # @return [String]
1480
+ attr_accessor :end
1481
+
1482
+ def initialize(**args)
1483
+ update!(**args)
1484
+ end
1485
+
1486
+ # Update properties of this object
1487
+ def update!(**args)
1488
+ @start = args[:start] if args.key?(:start)
1489
+ @end = args[:end] if args.key?(:end)
1490
+ end
1491
+ end
1492
+
1493
+ #
1494
+ class SearchReferencesResponse
1495
+ include Google::Apis::Core::Hashable
1496
+
1497
+ # The matching references.
1498
+ # Corresponds to the JSON property `references`
1499
+ # @return [Array<Google::Apis::GenomicsV1::Reference>]
1500
+ attr_accessor :references
1501
+
1502
+ # The continuation token, which is used to page through large result sets.
1503
+ # Provide this value in a subsequent request to return the next page of
1504
+ # results. This field will be empty if there aren't any additional results.
1505
+ # Corresponds to the JSON property `nextPageToken`
1506
+ # @return [String]
1507
+ attr_accessor :next_page_token
1508
+
1509
+ def initialize(**args)
1510
+ update!(**args)
1511
+ end
1512
+
1513
+ # Update properties of this object
1514
+ def update!(**args)
1515
+ @references = args[:references] if args.key?(:references)
1516
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1517
+ end
1518
+ end
1519
+
1520
+ # Request message for `GetIamPolicy` method.
1521
+ class GetIamPolicyRequest
1522
+ include Google::Apis::Core::Hashable
1523
+
1524
+ def initialize(**args)
1525
+ update!(**args)
1526
+ end
1527
+
1528
+ # Update properties of this object
1529
+ def update!(**args)
1530
+ end
1531
+ end
1532
+
1533
+ # Response message for `TestIamPermissions` method.
1534
+ class TestIamPermissionsResponse
1535
+ include Google::Apis::Core::Hashable
1536
+
1537
+ # A subset of `TestPermissionsRequest.permissions` that the caller is
1538
+ # allowed.
1539
+ # Corresponds to the JSON property `permissions`
1540
+ # @return [Array<String>]
1541
+ attr_accessor :permissions
1542
+
1543
+ def initialize(**args)
1544
+ update!(**args)
1545
+ end
1546
+
1547
+ # Update properties of this object
1548
+ def update!(**args)
1549
+ @permissions = args[:permissions] if args.key?(:permissions)
1550
+ end
1551
+ end
1552
+
1553
+ #
1554
+ class SearchAnnotationSetsRequest
1555
+ include Google::Apis::Core::Hashable
1556
+
1557
+ # The continuation token, which is used to page through large result sets.
1558
+ # To get the next page of results, set this parameter to the value of
1559
+ # `nextPageToken` from the previous response.
1560
+ # Corresponds to the JSON property `pageToken`
1561
+ # @return [String]
1562
+ attr_accessor :page_token
1563
+
1564
+ # The maximum number of results to return in a single page. If unspecified,
1565
+ # defaults to 128. The maximum value is 1024.
1566
+ # Corresponds to the JSON property `pageSize`
1567
+ # @return [Fixnum]
1568
+ attr_accessor :page_size
1569
+
1570
+ # Required. The dataset IDs to search within. Caller must have `READ` access
1571
+ # to these datasets.
1572
+ # Corresponds to the JSON property `datasetIds`
1573
+ # @return [Array<String>]
1574
+ attr_accessor :dataset_ids
1575
+
1576
+ # If specified, only annotation sets that have any of these types are
1577
+ # returned.
1578
+ # Corresponds to the JSON property `types`
1579
+ # @return [Array<String>]
1580
+ attr_accessor :types
1581
+
1582
+ # Only return annotations sets for which a substring of the name matches this
1583
+ # string (case insensitive).
1584
+ # Corresponds to the JSON property `name`
1585
+ # @return [String]
1586
+ attr_accessor :name
1587
+
1588
+ # If specified, only annotation sets associated with the given reference set
1589
+ # are returned.
1590
+ # Corresponds to the JSON property `referenceSetId`
1591
+ # @return [String]
1592
+ attr_accessor :reference_set_id
1593
+
1594
+ def initialize(**args)
1595
+ update!(**args)
1596
+ end
1597
+
1598
+ # Update properties of this object
1599
+ def update!(**args)
1600
+ @page_token = args[:page_token] if args.key?(:page_token)
1601
+ @page_size = args[:page_size] if args.key?(:page_size)
1602
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
1603
+ @types = args[:types] if args.key?(:types)
1604
+ @name = args[:name] if args.key?(:name)
1605
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1606
+ end
1607
+ end
1608
+
1609
+ # The read group set search response.
1610
+ class SearchReadGroupSetsResponse
1611
+ include Google::Apis::Core::Hashable
1612
+
1613
+ # The list of matching read group sets.
1614
+ # Corresponds to the JSON property `readGroupSets`
1615
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
1616
+ attr_accessor :read_group_sets
1617
+
1618
+ # The continuation token, which is used to page through large result sets.
1619
+ # Provide this value in a subsequent request to return the next page of
1620
+ # results. This field will be empty if there aren't any additional results.
1621
+ # Corresponds to the JSON property `nextPageToken`
1622
+ # @return [String]
1623
+ attr_accessor :next_page_token
1624
+
1625
+ def initialize(**args)
1626
+ update!(**args)
1627
+ end
1628
+
1629
+ # Update properties of this object
1630
+ def update!(**args)
1631
+ @read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
1632
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1633
+ end
1634
+ end
1635
+
1636
+ # A linear alignment can be represented by one CIGAR string. Describes the
1637
+ # mapped position and local alignment of the read to the reference.
1638
+ class LinearAlignment
1639
+ include Google::Apis::Core::Hashable
1640
+
1641
+ # An abstraction for referring to a genomic position, in relation to some
1642
+ # already known reference. For now, represents a genomic position as a
1643
+ # reference name, a base number on that reference (0-based), and a
1644
+ # determination of forward or reverse strand.
1645
+ # Corresponds to the JSON property `position`
1646
+ # @return [Google::Apis::GenomicsV1::Position]
1647
+ attr_accessor :position
1648
+
1649
+ # Represents the local alignment of this sequence (alignment matches, indels,
1650
+ # etc) against the reference.
1651
+ # Corresponds to the JSON property `cigar`
1652
+ # @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
1653
+ attr_accessor :cigar
1654
+
1655
+ # The mapping quality of this alignment. Represents how likely
1656
+ # the read maps to this position as opposed to other locations.
1657
+ # Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
1658
+ # the nearest integer.
1659
+ # Corresponds to the JSON property `mappingQuality`
1660
+ # @return [Fixnum]
1661
+ attr_accessor :mapping_quality
1662
+
1663
+ def initialize(**args)
1664
+ update!(**args)
1665
+ end
1666
+
1667
+ # Update properties of this object
1668
+ def update!(**args)
1669
+ @position = args[:position] if args.key?(:position)
1670
+ @cigar = args[:cigar] if args.key?(:cigar)
1671
+ @mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
1672
+ end
1673
+ end
1674
+
1675
+ #
1676
+ class SearchReferencesRequest
1677
+ include Google::Apis::Core::Hashable
1678
+
1679
+ # If present, return references for which the
1680
+ # md5checksum matches exactly.
1681
+ # Corresponds to the JSON property `md5checksums`
1682
+ # @return [Array<String>]
1683
+ attr_accessor :md5checksums
1684
+
1685
+ # If present, return references for which a prefix of any of
1686
+ # sourceAccessions match
1687
+ # any of these strings. Accession numbers typically have a main number and a
1688
+ # version, for example `GCF_000001405.26`.
1689
+ # Corresponds to the JSON property `accessions`
1690
+ # @return [Array<String>]
1691
+ attr_accessor :accessions
1692
+
1693
+ # The continuation token, which is used to page through large result sets.
1694
+ # To get the next page of results, set this parameter to the value of
1695
+ # `nextPageToken` from the previous response.
1696
+ # Corresponds to the JSON property `pageToken`
1697
+ # @return [String]
1698
+ attr_accessor :page_token
1699
+
1700
+ # If present, return only references which belong to this reference set.
1701
+ # Corresponds to the JSON property `referenceSetId`
1702
+ # @return [String]
1703
+ attr_accessor :reference_set_id
1704
+
1705
+ # The maximum number of results to return in a single page. If unspecified,
1706
+ # defaults to 1024. The maximum value is 4096.
1707
+ # Corresponds to the JSON property `pageSize`
1708
+ # @return [Fixnum]
1709
+ attr_accessor :page_size
1710
+
1711
+ def initialize(**args)
1712
+ update!(**args)
1713
+ end
1714
+
1715
+ # Update properties of this object
1716
+ def update!(**args)
1717
+ @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
1718
+ @accessions = args[:accessions] if args.key?(:accessions)
1719
+ @page_token = args[:page_token] if args.key?(:page_token)
1720
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1721
+ @page_size = args[:page_size] if args.key?(:page_size)
1722
+ end
1723
+ end
1724
+
1725
+ # A Dataset is a collection of genomic data.
1726
+ # For more genomics resource definitions, see [Fundamentals of Google
1727
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1728
+ class Dataset
1729
+ include Google::Apis::Core::Hashable
1730
+
1731
+ # The time this dataset was created, in seconds from the epoch.
1732
+ # Corresponds to the JSON property `createTime`
1733
+ # @return [String]
1734
+ attr_accessor :create_time
1735
+
1736
+ # The dataset name.
1737
+ # Corresponds to the JSON property `name`
1738
+ # @return [String]
1739
+ attr_accessor :name
1740
+
1741
+ # The Google Cloud project ID that this dataset belongs to.
1742
+ # Corresponds to the JSON property `projectId`
1743
+ # @return [String]
1744
+ attr_accessor :project_id
1745
+
1746
+ # The server-generated dataset ID, unique across all datasets.
1747
+ # Corresponds to the JSON property `id`
1748
+ # @return [String]
1749
+ attr_accessor :id
1750
+
1751
+ def initialize(**args)
1752
+ update!(**args)
1753
+ end
1754
+
1755
+ # Update properties of this object
1756
+ def update!(**args)
1757
+ @create_time = args[:create_time] if args.key?(:create_time)
1758
+ @name = args[:name] if args.key?(:name)
1759
+ @project_id = args[:project_id] if args.key?(:project_id)
1760
+ @id = args[:id] if args.key?(:id)
1761
+ end
1762
+ end
1763
+
1764
+ # The variant data import response.
1765
+ class ImportVariantsResponse
1766
+ include Google::Apis::Core::Hashable
1767
+
1768
+ # IDs of the call sets created during the import.
1769
+ # Corresponds to the JSON property `callSetIds`
1770
+ # @return [Array<String>]
1771
+ attr_accessor :call_set_ids
1772
+
1773
+ def initialize(**args)
1774
+ update!(**args)
1775
+ end
1776
+
1777
+ # Update properties of this object
1778
+ def update!(**args)
1779
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1780
+ end
1781
+ end
1782
+
1783
+ # A read group is all the data that's processed the same way by the sequencer.
1784
+ class ReadGroup
1785
+ include Google::Apis::Core::Hashable
1786
+
1787
+ # The reference set the reads in this read group are aligned to.
1788
+ # Corresponds to the JSON property `referenceSetId`
1789
+ # @return [String]
1790
+ attr_accessor :reference_set_id
1791
+
1792
+ # A map of additional read group information. This must be of the form
1793
+ # map<string, string[]> (string key mapping to a list of string values).
1794
+ # Corresponds to the JSON property `info`
1795
+ # @return [Hash<String,Array<Object>>]
1796
+ attr_accessor :info
1797
+
1798
+ # The server-generated read group ID, unique for all read groups.
1799
+ # Note: This is different than the @RG ID field in the SAM spec. For that
1800
+ # value, see name.
1801
+ # Corresponds to the JSON property `id`
1802
+ # @return [String]
1803
+ attr_accessor :id
1804
+
1805
+ # The predicted insert size of this read group. The insert size is the length
1806
+ # the sequenced DNA fragment from end-to-end, not including the adapters.
1807
+ # Corresponds to the JSON property `predictedInsertSize`
1808
+ # @return [Fixnum]
1809
+ attr_accessor :predicted_insert_size
1810
+
1811
+ # The programs used to generate this read group. Programs are always
1812
+ # identical for all read groups within a read group set. For this reason,
1813
+ # only the first read group in a returned set will have this field
1814
+ # populated.
1815
+ # Corresponds to the JSON property `programs`
1816
+ # @return [Array<Google::Apis::GenomicsV1::Program>]
1817
+ attr_accessor :programs
1818
+
1819
+ # A free-form text description of this read group.
1820
+ # Corresponds to the JSON property `description`
1821
+ # @return [String]
1822
+ attr_accessor :description
1823
+
1824
+ # A client-supplied sample identifier for the reads in this read group.
1825
+ # Corresponds to the JSON property `sampleId`
1826
+ # @return [String]
1827
+ attr_accessor :sample_id
1828
+
1829
+ # The dataset to which this read group belongs.
1830
+ # Corresponds to the JSON property `datasetId`
1831
+ # @return [String]
1832
+ attr_accessor :dataset_id
1833
+
1834
+ # The experiment used to generate this read group.
1835
+ # Corresponds to the JSON property `experiment`
1836
+ # @return [Google::Apis::GenomicsV1::Experiment]
1837
+ attr_accessor :experiment
1838
+
1839
+ # The read group name. This corresponds to the @RG ID field in the SAM spec.
1840
+ # Corresponds to the JSON property `name`
1841
+ # @return [String]
1842
+ attr_accessor :name
1843
+
1844
+ def initialize(**args)
1845
+ update!(**args)
1846
+ end
1847
+
1848
+ # Update properties of this object
1849
+ def update!(**args)
1850
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1851
+ @info = args[:info] if args.key?(:info)
1852
+ @id = args[:id] if args.key?(:id)
1853
+ @predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
1854
+ @programs = args[:programs] if args.key?(:programs)
1855
+ @description = args[:description] if args.key?(:description)
1856
+ @sample_id = args[:sample_id] if args.key?(:sample_id)
1857
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1858
+ @experiment = args[:experiment] if args.key?(:experiment)
1859
+ @name = args[:name] if args.key?(:name)
1860
+ end
1861
+ end
1862
+
1863
+ # A read group set is a logical collection of read groups, which are
1864
+ # collections of reads produced by a sequencer. A read group set typically
1865
+ # models reads corresponding to one sample, sequenced one way, and aligned one
1866
+ # way.
1867
+ # * A read group set belongs to one dataset.
1868
+ # * A read group belongs to one read group set.
1869
+ # * A read belongs to one read group.
1870
+ # For more genomics resource definitions, see [Fundamentals of Google
1871
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1872
+ class ReadGroupSet
1873
+ include Google::Apis::Core::Hashable
1874
+
1875
+ # The read groups in this set. There are typically 1-10 read groups in a read
1876
+ # group set.
1877
+ # Corresponds to the JSON property `readGroups`
1878
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
1879
+ attr_accessor :read_groups
1880
+
1881
+ # The filename of the original source file for this read group set, if any.
1882
+ # Corresponds to the JSON property `filename`
1883
+ # @return [String]
1884
+ attr_accessor :filename
1885
+
1886
+ # The read group set name. By default this will be initialized to the sample
1887
+ # name of the sequenced data contained in this set.
1888
+ # Corresponds to the JSON property `name`
1889
+ # @return [String]
1890
+ attr_accessor :name
1891
+
1892
+ # The reference set to which the reads in this read group set are aligned.
1893
+ # Corresponds to the JSON property `referenceSetId`
1894
+ # @return [String]
1895
+ attr_accessor :reference_set_id
1896
+
1897
+ # A map of additional read group set information.
1898
+ # Corresponds to the JSON property `info`
1899
+ # @return [Hash<String,Array<Object>>]
1900
+ attr_accessor :info
1901
+
1902
+ # The server-generated read group set ID, unique for all read group sets.
1903
+ # Corresponds to the JSON property `id`
1904
+ # @return [String]
1905
+ attr_accessor :id
1906
+
1907
+ # The dataset to which this read group set belongs.
1908
+ # Corresponds to the JSON property `datasetId`
1909
+ # @return [String]
1910
+ attr_accessor :dataset_id
1911
+
1912
+ def initialize(**args)
1913
+ update!(**args)
1914
+ end
1915
+
1916
+ # Update properties of this object
1917
+ def update!(**args)
1918
+ @read_groups = args[:read_groups] if args.key?(:read_groups)
1919
+ @filename = args[:filename] if args.key?(:filename)
1920
+ @name = args[:name] if args.key?(:name)
1921
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1922
+ @info = args[:info] if args.key?(:info)
1923
+ @id = args[:id] if args.key?(:id)
1924
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1925
+ end
1926
+ end
1927
+
1928
+ # The search variant sets response.
1929
+ class SearchVariantSetsResponse
1930
+ include Google::Apis::Core::Hashable
1931
+
1932
+ # The continuation token, which is used to page through large result sets.
1933
+ # Provide this value in a subsequent request to return the next page of
1934
+ # results. This field will be empty if there aren't any additional results.
1935
+ # Corresponds to the JSON property `nextPageToken`
1936
+ # @return [String]
1937
+ attr_accessor :next_page_token
1938
+
1939
+ # The variant sets belonging to the requested dataset.
1940
+ # Corresponds to the JSON property `variantSets`
1941
+ # @return [Array<Google::Apis::GenomicsV1::VariantSet>]
1942
+ attr_accessor :variant_sets
1943
+
1944
+ def initialize(**args)
1945
+ update!(**args)
1946
+ end
1947
+
1948
+ # Update properties of this object
1949
+ def update!(**args)
1950
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1951
+ @variant_sets = args[:variant_sets] if args.key?(:variant_sets)
1952
+ end
1953
+ end
1954
+
1955
+ # A generic empty message that you can re-use to avoid defining duplicated
1956
+ # empty messages in your APIs. A typical example is to use it as the request
1957
+ # or the response type of an API method. For instance:
1958
+ # service Foo `
1959
+ # rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
1960
+ # `
1961
+ # The JSON representation for `Empty` is empty JSON object ````.
1962
+ class Empty
1963
+ include Google::Apis::Core::Hashable
1964
+
1965
+ def initialize(**args)
1966
+ update!(**args)
1967
+ end
1968
+
1969
+ # Update properties of this object
1970
+ def update!(**args)
1971
+ end
1972
+ end
1973
+
1974
+ #
1975
+ class Entry
1976
+ include Google::Apis::Core::Hashable
1977
+
1978
+ # The `Status` type defines a logical error model that is suitable for different
1979
+ # programming environments, including REST APIs and RPC APIs. It is used by
1980
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
1981
+ # - Simple to use and understand for most users
1982
+ # - Flexible enough to meet unexpected needs
1983
+ # # Overview
1984
+ # The `Status` message contains three pieces of data: error code, error message,
1985
+ # and error details. The error code should be an enum value of
1986
+ # google.rpc.Code, but it may accept additional error codes if needed. The
1987
+ # error message should be a developer-facing English message that helps
1988
+ # developers *understand* and *resolve* the error. If a localized user-facing
1989
+ # error message is needed, put the localized message in the error details or
1990
+ # localize it in the client. The optional error details may contain arbitrary
1991
+ # information about the error. There is a predefined set of error detail types
1992
+ # in the package `google.rpc` which can be used for common error conditions.
1993
+ # # Language mapping
1994
+ # The `Status` message is the logical representation of the error model, but it
1995
+ # is not necessarily the actual wire format. When the `Status` message is
1996
+ # exposed in different client libraries and different wire protocols, it can be
1997
+ # mapped differently. For example, it will likely be mapped to some exceptions
1998
+ # in Java, but more likely mapped to some error codes in C.
1999
+ # # Other uses
2000
+ # The error model and the `Status` message can be used in a variety of
2001
+ # environments, either with or without APIs, to provide a
2002
+ # consistent developer experience across different environments.
2003
+ # Example uses of this error model include:
2004
+ # - Partial errors. If a service needs to return partial errors to the client,
2005
+ # it may embed the `Status` in the normal response to indicate the partial
2006
+ # errors.
2007
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2008
+ # have a `Status` message for error reporting purpose.
2009
+ # - Batch operations. If a client uses batch request and batch response, the
2010
+ # `Status` message should be used directly inside batch response, one for
2011
+ # each error sub-response.
2012
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2013
+ # results in its response, the status of those operations should be
2014
+ # represented directly using the `Status` message.
2015
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2016
+ # be used directly after any stripping needed for security/privacy reasons.
2017
+ # Corresponds to the JSON property `status`
2018
+ # @return [Google::Apis::GenomicsV1::Status]
2019
+ attr_accessor :status
2020
+
2021
+ # An annotation describes a region of reference genome. The value of an
2022
+ # annotation may be one of several canonical types, supplemented by arbitrary
2023
+ # info tags. An annotation is not inherently associated with a specific
2024
+ # sample or individual (though a client could choose to use annotations in
2025
+ # this way). Example canonical annotation types are `GENE` and
2026
+ # `VARIANT`.
2027
+ # Corresponds to the JSON property `annotation`
2028
+ # @return [Google::Apis::GenomicsV1::Annotation]
2029
+ attr_accessor :annotation
2030
+
2031
+ def initialize(**args)
2032
+ update!(**args)
2033
+ end
2034
+
2035
+ # Update properties of this object
2036
+ def update!(**args)
2037
+ @status = args[:status] if args.key?(:status)
2038
+ @annotation = args[:annotation] if args.key?(:annotation)
2039
+ end
2040
+ end
2041
+
2042
+ # An abstraction for referring to a genomic position, in relation to some
2043
+ # already known reference. For now, represents a genomic position as a
2044
+ # reference name, a base number on that reference (0-based), and a
2045
+ # determination of forward or reverse strand.
2046
+ class Position
2047
+ include Google::Apis::Core::Hashable
2048
+
2049
+ # Whether this position is on the reverse strand, as opposed to the forward
2050
+ # strand.
2051
+ # Corresponds to the JSON property `reverseStrand`
2052
+ # @return [Boolean]
2053
+ attr_accessor :reverse_strand
2054
+ alias_method :reverse_strand?, :reverse_strand
2055
+
2056
+ # The 0-based offset from the start of the forward strand for that reference.
2057
+ # Corresponds to the JSON property `position`
2058
+ # @return [String]
2059
+ attr_accessor :position
2060
+
2061
+ # The name of the reference in whatever reference set is being used.
2062
+ # Corresponds to the JSON property `referenceName`
2063
+ # @return [String]
2064
+ attr_accessor :reference_name
2065
+
2066
+ def initialize(**args)
2067
+ update!(**args)
2068
+ end
2069
+
2070
+ # Update properties of this object
2071
+ def update!(**args)
2072
+ @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
2073
+ @position = args[:position] if args.key?(:position)
2074
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2075
+ end
2076
+ end
2077
+
2078
+ #
2079
+ class SearchReferenceSetsResponse
2080
+ include Google::Apis::Core::Hashable
2081
+
2082
+ # The matching references sets.
2083
+ # Corresponds to the JSON property `referenceSets`
2084
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
2085
+ attr_accessor :reference_sets
2086
+
2087
+ # The continuation token, which is used to page through large result sets.
2088
+ # Provide this value in a subsequent request to return the next page of
2089
+ # results. This field will be empty if there aren't any additional results.
2090
+ # Corresponds to the JSON property `nextPageToken`
2091
+ # @return [String]
2092
+ attr_accessor :next_page_token
2093
+
2094
+ def initialize(**args)
2095
+ update!(**args)
2096
+ end
2097
+
2098
+ # Update properties of this object
2099
+ def update!(**args)
2100
+ @reference_sets = args[:reference_sets] if args.key?(:reference_sets)
2101
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2102
+ end
2103
+ end
2104
+
2105
+ # The call set search request.
2106
+ class SearchCallSetsRequest
2107
+ include Google::Apis::Core::Hashable
2108
+
2109
+ # Restrict the query to call sets within the given variant sets. At least one
2110
+ # ID must be provided.
2111
+ # Corresponds to the JSON property `variantSetIds`
2112
+ # @return [Array<String>]
2113
+ attr_accessor :variant_set_ids
2114
+
2115
+ # Only return call sets for which a substring of the name matches this
2116
+ # string.
2117
+ # Corresponds to the JSON property `name`
2118
+ # @return [String]
2119
+ attr_accessor :name
2120
+
2121
+ # The continuation token, which is used to page through large result sets.
2122
+ # To get the next page of results, set this parameter to the value of
2123
+ # `nextPageToken` from the previous response.
2124
+ # Corresponds to the JSON property `pageToken`
2125
+ # @return [String]
2126
+ attr_accessor :page_token
2127
+
2128
+ # The maximum number of results to return in a single page. If unspecified,
2129
+ # defaults to 1024.
2130
+ # Corresponds to the JSON property `pageSize`
2131
+ # @return [Fixnum]
2132
+ attr_accessor :page_size
2133
+
2134
+ def initialize(**args)
2135
+ update!(**args)
2136
+ end
2137
+
2138
+ # Update properties of this object
2139
+ def update!(**args)
2140
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
2141
+ @name = args[:name] if args.key?(:name)
2142
+ @page_token = args[:page_token] if args.key?(:page_token)
2143
+ @page_size = args[:page_size] if args.key?(:page_size)
2144
+ end
2145
+ end
2146
+
2147
+ # The read group set import request.
2148
+ class ImportReadGroupSetsRequest
2149
+ include Google::Apis::Core::Hashable
2150
+
2151
+ # The reference set to which the imported read group sets are aligned to, if
2152
+ # any. The reference names of this reference set must be a superset of those
2153
+ # found in the imported file headers. If no reference set id is provided, a
2154
+ # best effort is made to associate with a matching reference set.
2155
+ # Corresponds to the JSON property `referenceSetId`
2156
+ # @return [String]
2157
+ attr_accessor :reference_set_id
2158
+
2159
+ # The partition strategy describes how read groups are partitioned into read
2160
+ # group sets.
2161
+ # Corresponds to the JSON property `partitionStrategy`
2162
+ # @return [String]
2163
+ attr_accessor :partition_strategy
2164
+
2165
+ # Required. The ID of the dataset these read group sets will belong to. The
2166
+ # caller must have WRITE permissions to this dataset.
2167
+ # Corresponds to the JSON property `datasetId`
2168
+ # @return [String]
2169
+ attr_accessor :dataset_id
2170
+
2171
+ # A list of URIs pointing at [BAM
2172
+ # files](https://samtools.github.io/hts-specs/SAMv1.pdf)
2173
+ # in Google Cloud Storage.
2174
+ # Those URIs can include wildcards (*), but do not add or remove
2175
+ # matching files before import has completed.
2176
+ # Note that Google Cloud Storage object listing is only eventually
2177
+ # consistent: files added may be not be immediately visible to
2178
+ # everyone. Thus, if using a wildcard it is preferable not to start
2179
+ # the import immediately after the files are created.
2180
+ # Corresponds to the JSON property `sourceUris`
2181
+ # @return [Array<String>]
2182
+ attr_accessor :source_uris
2183
+
2184
+ def initialize(**args)
2185
+ update!(**args)
2186
+ end
2187
+
2188
+ # Update properties of this object
2189
+ def update!(**args)
2190
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2191
+ @partition_strategy = args[:partition_strategy] if args.key?(:partition_strategy)
2192
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2193
+ @source_uris = args[:source_uris] if args.key?(:source_uris)
2194
+ end
2195
+ end
2196
+
2197
+ # Defines an Identity and Access Management (IAM) policy. It is used to
2198
+ # specify access control policies for Cloud Platform resources.
2199
+ # A `Policy` consists of a list of `bindings`. A `Binding` binds a list of
2200
+ # `members` to a `role`, where the members can be user accounts, Google groups,
2201
+ # Google domains, and service accounts. A `role` is a named list of permissions
2202
+ # defined by IAM.
2203
+ # **Example**
2204
+ # `
2205
+ # "bindings": [
2206
+ # `
2207
+ # "role": "roles/owner",
2208
+ # "members": [
2209
+ # "user:mike@example.com",
2210
+ # "group:admins@example.com",
2211
+ # "domain:google.com",
2212
+ # "serviceAccount:my-other-app@appspot.gserviceaccount.com",
2213
+ # ]
2214
+ # `,
2215
+ # `
2216
+ # "role": "roles/viewer",
2217
+ # "members": ["user:sean@example.com"]
2218
+ # `
2219
+ # ]
2220
+ # `
2221
+ # For a description of IAM and its features, see the
2222
+ # [IAM developer's guide](https://cloud.google.com/iam).
2223
+ class Policy
2224
+ include Google::Apis::Core::Hashable
2225
+
2226
+ # `etag` is used for optimistic concurrency control as a way to help
2227
+ # prevent simultaneous updates of a policy from overwriting each other.
2228
+ # It is strongly suggested that systems make use of the `etag` in the
2229
+ # read-modify-write cycle to perform policy updates in order to avoid race
2230
+ # conditions: An `etag` is returned in the response to `getIamPolicy`, and
2231
+ # systems are expected to put that etag in the request to `setIamPolicy` to
2232
+ # ensure that their change will be applied to the same version of the policy.
2233
+ # If no `etag` is provided in the call to `setIamPolicy`, then the existing
2234
+ # policy is overwritten blindly.
2235
+ # Corresponds to the JSON property `etag`
2236
+ # @return [String]
2237
+ attr_accessor :etag
2238
+
2239
+ # Version of the `Policy`. The default version is 0.
2240
+ # Corresponds to the JSON property `version`
2241
+ # @return [Fixnum]
2242
+ attr_accessor :version
2243
+
2244
+ # Associates a list of `members` to a `role`.
2245
+ # Multiple `bindings` must not be specified for the same `role`.
2246
+ # `bindings` with no members will result in an error.
2247
+ # Corresponds to the JSON property `bindings`
2248
+ # @return [Array<Google::Apis::GenomicsV1::Binding>]
2249
+ attr_accessor :bindings
2250
+
2251
+ def initialize(**args)
2252
+ update!(**args)
2253
+ end
2254
+
2255
+ # Update properties of this object
2256
+ def update!(**args)
2257
+ @etag = args[:etag] if args.key?(:etag)
2258
+ @version = args[:version] if args.key?(:version)
2259
+ @bindings = args[:bindings] if args.key?(:bindings)
2260
+ end
2261
+ end
2262
+
2263
+ # The read search request.
2264
+ class SearchReadsRequest
2265
+ include Google::Apis::Core::Hashable
2266
+
2267
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
2268
+ # `*`, only unmapped reads are returned. If unspecified, all reads (mapped
2269
+ # and unmapped) are returned.
2270
+ # Corresponds to the JSON property `referenceName`
2271
+ # @return [String]
2272
+ attr_accessor :reference_name
2273
+
2274
+ # The IDs of the read groups sets within which to search for reads. All
2275
+ # specified read group sets must be aligned against a common set of reference
2276
+ # sequences; this defines the genomic coordinates for the query. Must specify
2277
+ # one of `readGroupSetIds` or `readGroupIds`.
2278
+ # Corresponds to the JSON property `readGroupSetIds`
2279
+ # @return [Array<String>]
2280
+ attr_accessor :read_group_set_ids
2281
+
2282
+ # The IDs of the read groups within which to search for reads. All specified
2283
+ # read groups must belong to the same read group sets. Must specify one of
2284
+ # `readGroupSetIds` or `readGroupIds`.
2285
+ # Corresponds to the JSON property `readGroupIds`
2286
+ # @return [Array<String>]
2287
+ attr_accessor :read_group_ids
2288
+
2289
+ # The end position of the range on the reference, 0-based exclusive. If
2290
+ # specified, `referenceName` must also be specified.
2291
+ # Corresponds to the JSON property `end`
2292
+ # @return [String]
2293
+ attr_accessor :end
2294
+
2295
+ # The continuation token, which is used to page through large result sets.
2296
+ # To get the next page of results, set this parameter to the value of
2297
+ # `nextPageToken` from the previous response.
2298
+ # Corresponds to the JSON property `pageToken`
2299
+ # @return [String]
2300
+ attr_accessor :page_token
2301
+
2302
+ # The maximum number of results to return in a single page. If unspecified,
2303
+ # defaults to 256. The maximum value is 2048.
2304
+ # Corresponds to the JSON property `pageSize`
2305
+ # @return [Fixnum]
2306
+ attr_accessor :page_size
2307
+
2308
+ # The start position of the range on the reference, 0-based inclusive. If
2309
+ # specified, `referenceName` must also be specified.
2310
+ # Corresponds to the JSON property `start`
2311
+ # @return [String]
2312
+ attr_accessor :start
2313
+
2314
+ def initialize(**args)
2315
+ update!(**args)
2316
+ end
2317
+
2318
+ # Update properties of this object
2319
+ def update!(**args)
2320
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2321
+ @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2322
+ @read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
2323
+ @end = args[:end] if args.key?(:end)
2324
+ @page_token = args[:page_token] if args.key?(:page_token)
2325
+ @page_size = args[:page_size] if args.key?(:page_size)
2326
+ @start = args[:start] if args.key?(:start)
2327
+ end
2328
+ end
2329
+
2330
+ # The request message for Operations.CancelOperation.
2331
+ class CancelOperationRequest
2332
+ include Google::Apis::Core::Hashable
2333
+
2334
+ def initialize(**args)
2335
+ update!(**args)
2336
+ end
2337
+
2338
+ # Update properties of this object
2339
+ def update!(**args)
2340
+ end
2341
+ end
2342
+
2343
+ # An annotation describes a region of reference genome. The value of an
2344
+ # annotation may be one of several canonical types, supplemented by arbitrary
2345
+ # info tags. An annotation is not inherently associated with a specific
2346
+ # sample or individual (though a client could choose to use annotations in
2347
+ # this way). Example canonical annotation types are `GENE` and
2348
+ # `VARIANT`.
2349
+ class Annotation
2350
+ include Google::Apis::Core::Hashable
2351
+
2352
+ # A transcript represents the assertion that a particular region of the
2353
+ # reference genome may be transcribed as RNA.
2354
+ # Corresponds to the JSON property `transcript`
2355
+ # @return [Google::Apis::GenomicsV1::Transcript]
2356
+ attr_accessor :transcript
2357
+
2358
+ # The start position of the range on the reference, 0-based inclusive.
2359
+ # Corresponds to the JSON property `start`
2360
+ # @return [String]
2361
+ attr_accessor :start
2362
+
2363
+ # The annotation set to which this annotation belongs.
2364
+ # Corresponds to the JSON property `annotationSetId`
2365
+ # @return [String]
2366
+ attr_accessor :annotation_set_id
2367
+
2368
+ # The display name of this annotation.
2369
+ # Corresponds to the JSON property `name`
2370
+ # @return [String]
2371
+ attr_accessor :name
2372
+
2373
+ # A variant annotation, which describes the effect of a variant on the
2374
+ # genome, the coding sequence, and/or higher level consequences at the
2375
+ # organism level e.g. pathogenicity. This field is only set for annotations
2376
+ # of type `VARIANT`.
2377
+ # Corresponds to the JSON property `variant`
2378
+ # @return [Google::Apis::GenomicsV1::VariantAnnotation]
2379
+ attr_accessor :variant
2380
+
2381
+ # The ID of the Google Genomics reference associated with this range.
2382
+ # Corresponds to the JSON property `referenceId`
2383
+ # @return [String]
2384
+ attr_accessor :reference_id
2385
+
2386
+ # The server-generated annotation ID, unique across all annotations.
2387
+ # Corresponds to the JSON property `id`
2388
+ # @return [String]
2389
+ attr_accessor :id
2390
+
2391
+ # Whether this range refers to the reverse strand, as opposed to the forward
2392
+ # strand. Note that regardless of this field, the start/end position of the
2393
+ # range always refer to the forward strand.
2394
+ # Corresponds to the JSON property `reverseStrand`
2395
+ # @return [Boolean]
2396
+ attr_accessor :reverse_strand
2397
+ alias_method :reverse_strand?, :reverse_strand
2398
+
2399
+ # The display name corresponding to the reference specified by
2400
+ # `referenceId`, for example `chr1`, `1`, or `chrX`.
2401
+ # Corresponds to the JSON property `referenceName`
2402
+ # @return [String]
2403
+ attr_accessor :reference_name
2404
+
2405
+ # The data type for this annotation. Must match the containing annotation
2406
+ # set's type.
2407
+ # Corresponds to the JSON property `type`
2408
+ # @return [String]
2409
+ attr_accessor :type
2410
+
2411
+ # A map of additional read alignment information. This must be of the form
2412
+ # map<string, string[]> (string key mapping to a list of string values).
2413
+ # Corresponds to the JSON property `info`
2414
+ # @return [Hash<String,Array<Object>>]
2415
+ attr_accessor :info
2416
+
2417
+ # The end position of the range on the reference, 0-based exclusive.
2418
+ # Corresponds to the JSON property `end`
2419
+ # @return [String]
2420
+ attr_accessor :end
2421
+
2422
+ def initialize(**args)
2423
+ update!(**args)
2424
+ end
2425
+
2426
+ # Update properties of this object
2427
+ def update!(**args)
2428
+ @transcript = args[:transcript] if args.key?(:transcript)
2429
+ @start = args[:start] if args.key?(:start)
2430
+ @annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
2431
+ @name = args[:name] if args.key?(:name)
2432
+ @variant = args[:variant] if args.key?(:variant)
2433
+ @reference_id = args[:reference_id] if args.key?(:reference_id)
2434
+ @id = args[:id] if args.key?(:id)
2435
+ @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
2436
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2437
+ @type = args[:type] if args.key?(:type)
2438
+ @info = args[:info] if args.key?(:info)
2439
+ @end = args[:end] if args.key?(:end)
2440
+ end
2441
+ end
2442
+
2443
+ # This resource represents a long-running operation that is the result of a
2444
+ # network API call.
2445
+ class Operation
2446
+ include Google::Apis::Core::Hashable
2447
+
2448
+ # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
2449
+ # importing Variants, an ImportVariantsResponse is returned. For pipelines and
2450
+ # exports, an empty response is returned.
2451
+ # Corresponds to the JSON property `response`
2452
+ # @return [Hash<String,Object>]
2453
+ attr_accessor :response
2454
+
2455
+ # The server-assigned name, which is only unique within the same service that
2456
+ # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
2457
+ # qzoWAgEw`
2458
+ # Corresponds to the JSON property `name`
2459
+ # @return [String]
2460
+ attr_accessor :name
2461
+
2462
+ # The `Status` type defines a logical error model that is suitable for different
2463
+ # programming environments, including REST APIs and RPC APIs. It is used by
2464
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
2465
+ # - Simple to use and understand for most users
2466
+ # - Flexible enough to meet unexpected needs
2467
+ # # Overview
2468
+ # The `Status` message contains three pieces of data: error code, error message,
2469
+ # and error details. The error code should be an enum value of
2470
+ # google.rpc.Code, but it may accept additional error codes if needed. The
2471
+ # error message should be a developer-facing English message that helps
2472
+ # developers *understand* and *resolve* the error. If a localized user-facing
2473
+ # error message is needed, put the localized message in the error details or
2474
+ # localize it in the client. The optional error details may contain arbitrary
2475
+ # information about the error. There is a predefined set of error detail types
2476
+ # in the package `google.rpc` which can be used for common error conditions.
2477
+ # # Language mapping
2478
+ # The `Status` message is the logical representation of the error model, but it
2479
+ # is not necessarily the actual wire format. When the `Status` message is
2480
+ # exposed in different client libraries and different wire protocols, it can be
2481
+ # mapped differently. For example, it will likely be mapped to some exceptions
2482
+ # in Java, but more likely mapped to some error codes in C.
2483
+ # # Other uses
2484
+ # The error model and the `Status` message can be used in a variety of
2485
+ # environments, either with or without APIs, to provide a
2486
+ # consistent developer experience across different environments.
2487
+ # Example uses of this error model include:
2488
+ # - Partial errors. If a service needs to return partial errors to the client,
2489
+ # it may embed the `Status` in the normal response to indicate the partial
2490
+ # errors.
2491
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2492
+ # have a `Status` message for error reporting purpose.
2493
+ # - Batch operations. If a client uses batch request and batch response, the
2494
+ # `Status` message should be used directly inside batch response, one for
2495
+ # each error sub-response.
2496
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2497
+ # results in its response, the status of those operations should be
2498
+ # represented directly using the `Status` message.
2499
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2500
+ # be used directly after any stripping needed for security/privacy reasons.
2501
+ # Corresponds to the JSON property `error`
2502
+ # @return [Google::Apis::GenomicsV1::Status]
2503
+ attr_accessor :error
2504
+
2505
+ # An OperationMetadata object. This will always be returned with the Operation.
2506
+ # Corresponds to the JSON property `metadata`
2507
+ # @return [Hash<String,Object>]
2508
+ attr_accessor :metadata
2509
+
2510
+ # If the value is `false`, it means the operation is still in progress.
2511
+ # If true, the operation is completed, and either `error` or `response` is
2512
+ # available.
2513
+ # Corresponds to the JSON property `done`
2514
+ # @return [Boolean]
2515
+ attr_accessor :done
2516
+ alias_method :done?, :done
2517
+
2518
+ def initialize(**args)
2519
+ update!(**args)
2520
+ end
2521
+
2522
+ # Update properties of this object
2523
+ def update!(**args)
2524
+ @response = args[:response] if args.key?(:response)
2525
+ @name = args[:name] if args.key?(:name)
2526
+ @error = args[:error] if args.key?(:error)
2527
+ @metadata = args[:metadata] if args.key?(:metadata)
2528
+ @done = args[:done] if args.key?(:done)
2529
+ end
2530
+ end
2531
+
2532
+ # Runtime metadata that will be populated in the
2533
+ # runtimeMetadata
2534
+ # field of the Operation associated with a RunPipeline execution.
2535
+ class RuntimeMetadata
2536
+ include Google::Apis::Core::Hashable
2537
+
2538
+ # Describes a Compute Engine resource that is being managed by a running
2539
+ # pipeline.
2540
+ # Corresponds to the JSON property `computeEngine`
2541
+ # @return [Google::Apis::GenomicsV1::ComputeEngine]
2542
+ attr_accessor :compute_engine
2543
+
2544
+ def initialize(**args)
2545
+ update!(**args)
2546
+ end
2547
+
2548
+ # Update properties of this object
2549
+ def update!(**args)
2550
+ @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
2551
+ end
2552
+ end
2553
+
2554
+ # The read group set import response.
2555
+ class ImportReadGroupSetsResponse
2556
+ include Google::Apis::Core::Hashable
2557
+
2558
+ # IDs of the read group sets that were created.
2559
+ # Corresponds to the JSON property `readGroupSetIds`
2560
+ # @return [Array<String>]
2561
+ attr_accessor :read_group_set_ids
2562
+
2563
+ def initialize(**args)
2564
+ update!(**args)
2565
+ end
2566
+
2567
+ # Update properties of this object
2568
+ def update!(**args)
2569
+ @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2570
+ end
2571
+ end
2572
+
2573
+ # A call represents the determination of genotype with respect to a particular
2574
+ # variant. It may include associated information such as quality and phasing.
2575
+ # For example, a call might assign a probability of 0.32 to the occurrence of
2576
+ # a SNP named rs1234 in a call set with the name NA12345.
2577
+ class VariantCall
2578
+ include Google::Apis::Core::Hashable
2579
+
2580
+ # If this field is present, this variant call's genotype ordering implies
2581
+ # the phase of the bases and is consistent with any other variant calls in
2582
+ # the same reference sequence which have the same phaseset value.
2583
+ # When importing data from VCF, if the genotype data was phased but no
2584
+ # phase set was specified this field will be set to `*`.
2585
+ # Corresponds to the JSON property `phaseset`
2586
+ # @return [String]
2587
+ attr_accessor :phaseset
2588
+
2589
+ # A map of additional variant call information. This must be of the form
2590
+ # map<string, string[]> (string key mapping to a list of string values).
2591
+ # Corresponds to the JSON property `info`
2592
+ # @return [Hash<String,Array<Object>>]
2593
+ attr_accessor :info
2594
+
2595
+ # The name of the call set this variant call belongs to.
2596
+ # Corresponds to the JSON property `callSetName`
2597
+ # @return [String]
2598
+ attr_accessor :call_set_name
2599
+
2600
+ # The genotype likelihoods for this variant call. Each array entry
2601
+ # represents how likely a specific genotype is for this call. The value
2602
+ # ordering is defined by the GL tag in the VCF spec.
2603
+ # If Phred-scaled genotype likelihood scores (PL) are available and
2604
+ # log10(P) genotype likelihood scores (GL) are not, PL scores are converted
2605
+ # to GL scores. If both are available, PL scores are stored in `info`.
2606
+ # Corresponds to the JSON property `genotypeLikelihood`
2607
+ # @return [Array<Float>]
2608
+ attr_accessor :genotype_likelihood
2609
+
2610
+ # The ID of the call set this variant call belongs to.
2611
+ # Corresponds to the JSON property `callSetId`
2612
+ # @return [String]
2613
+ attr_accessor :call_set_id
2614
+
2615
+ # The genotype of this variant call. Each value represents either the value
2616
+ # of the `referenceBases` field or a 1-based index into
2617
+ # `alternateBases`. If a variant had a `referenceBases`
2618
+ # value of `T` and an `alternateBases`
2619
+ # value of `["A", "C"]`, and the `genotype` was
2620
+ # `[2, 1]`, that would mean the call
2621
+ # represented the heterozygous value `CA` for this variant.
2622
+ # If the `genotype` was instead `[0, 1]`, the
2623
+ # represented value would be `TA`. Ordering of the
2624
+ # genotype values is important if the `phaseset` is present.
2625
+ # If a genotype is not called (that is, a `.` is present in the
2626
+ # GT string) -1 is returned.
2627
+ # Corresponds to the JSON property `genotype`
2628
+ # @return [Array<Fixnum>]
2629
+ attr_accessor :genotype
2630
+
2631
+ def initialize(**args)
2632
+ update!(**args)
2633
+ end
2634
+
2635
+ # Update properties of this object
2636
+ def update!(**args)
2637
+ @phaseset = args[:phaseset] if args.key?(:phaseset)
2638
+ @info = args[:info] if args.key?(:info)
2639
+ @call_set_name = args[:call_set_name] if args.key?(:call_set_name)
2640
+ @genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
2641
+ @call_set_id = args[:call_set_id] if args.key?(:call_set_id)
2642
+ @genotype = args[:genotype] if args.key?(:genotype)
2643
+ end
2644
+ end
2645
+
2646
+ # The variant search response.
2647
+ class SearchVariantsResponse
2648
+ include Google::Apis::Core::Hashable
2649
+
2650
+ # The continuation token, which is used to page through large result sets.
2651
+ # Provide this value in a subsequent request to return the next page of
2652
+ # results. This field will be empty if there aren't any additional results.
2653
+ # Corresponds to the JSON property `nextPageToken`
2654
+ # @return [String]
2655
+ attr_accessor :next_page_token
2656
+
2657
+ # The list of matching Variants.
2658
+ # Corresponds to the JSON property `variants`
2659
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
2660
+ attr_accessor :variants
2661
+
2662
+ def initialize(**args)
2663
+ update!(**args)
2664
+ end
2665
+
2666
+ # Update properties of this object
2667
+ def update!(**args)
2668
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2669
+ @variants = args[:variants] if args.key?(:variants)
2670
+ end
2671
+ end
2672
+
2673
+ #
2674
+ class ListBasesResponse
2675
+ include Google::Apis::Core::Hashable
2676
+
2677
+ # A substring of the bases that make up this reference.
2678
+ # Corresponds to the JSON property `sequence`
2679
+ # @return [String]
2680
+ attr_accessor :sequence
2681
+
2682
+ # The offset position (0-based) of the given `sequence` from the
2683
+ # start of this `Reference`. This value will differ for each page
2684
+ # in a paginated request.
2685
+ # Corresponds to the JSON property `offset`
2686
+ # @return [String]
2687
+ attr_accessor :offset
2688
+
2689
+ # The continuation token, which is used to page through large result sets.
2690
+ # Provide this value in a subsequent request to return the next page of
2691
+ # results. This field will be empty if there aren't any additional results.
2692
+ # Corresponds to the JSON property `nextPageToken`
2693
+ # @return [String]
2694
+ attr_accessor :next_page_token
2695
+
2696
+ def initialize(**args)
2697
+ update!(**args)
2698
+ end
2699
+
2700
+ # Update properties of this object
2701
+ def update!(**args)
2702
+ @sequence = args[:sequence] if args.key?(:sequence)
2703
+ @offset = args[:offset] if args.key?(:offset)
2704
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2705
+ end
2706
+ end
2707
+
2708
+ # The `Status` type defines a logical error model that is suitable for different
2709
+ # programming environments, including REST APIs and RPC APIs. It is used by
2710
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
2711
+ # - Simple to use and understand for most users
2712
+ # - Flexible enough to meet unexpected needs
2713
+ # # Overview
2714
+ # The `Status` message contains three pieces of data: error code, error message,
2715
+ # and error details. The error code should be an enum value of
2716
+ # google.rpc.Code, but it may accept additional error codes if needed. The
2717
+ # error message should be a developer-facing English message that helps
2718
+ # developers *understand* and *resolve* the error. If a localized user-facing
2719
+ # error message is needed, put the localized message in the error details or
2720
+ # localize it in the client. The optional error details may contain arbitrary
2721
+ # information about the error. There is a predefined set of error detail types
2722
+ # in the package `google.rpc` which can be used for common error conditions.
2723
+ # # Language mapping
2724
+ # The `Status` message is the logical representation of the error model, but it
2725
+ # is not necessarily the actual wire format. When the `Status` message is
2726
+ # exposed in different client libraries and different wire protocols, it can be
2727
+ # mapped differently. For example, it will likely be mapped to some exceptions
2728
+ # in Java, but more likely mapped to some error codes in C.
2729
+ # # Other uses
2730
+ # The error model and the `Status` message can be used in a variety of
2731
+ # environments, either with or without APIs, to provide a
2732
+ # consistent developer experience across different environments.
2733
+ # Example uses of this error model include:
2734
+ # - Partial errors. If a service needs to return partial errors to the client,
2735
+ # it may embed the `Status` in the normal response to indicate the partial
2736
+ # errors.
2737
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2738
+ # have a `Status` message for error reporting purpose.
2739
+ # - Batch operations. If a client uses batch request and batch response, the
2740
+ # `Status` message should be used directly inside batch response, one for
2741
+ # each error sub-response.
2742
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2743
+ # results in its response, the status of those operations should be
2744
+ # represented directly using the `Status` message.
2745
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2746
+ # be used directly after any stripping needed for security/privacy reasons.
2747
+ class Status
2748
+ include Google::Apis::Core::Hashable
2749
+
2750
+ # A developer-facing error message, which should be in English. Any
2751
+ # user-facing error message should be localized and sent in the
2752
+ # google.rpc.Status.details field, or localized by the client.
2753
+ # Corresponds to the JSON property `message`
2754
+ # @return [String]
2755
+ attr_accessor :message
2756
+
2757
+ # A list of messages that carry the error details. There will be a
2758
+ # common set of message types for APIs to use.
2759
+ # Corresponds to the JSON property `details`
2760
+ # @return [Array<Hash<String,Object>>]
2761
+ attr_accessor :details
2762
+
2763
+ # The status code, which should be an enum value of google.rpc.Code.
2764
+ # Corresponds to the JSON property `code`
2765
+ # @return [Fixnum]
2766
+ attr_accessor :code
2767
+
2768
+ def initialize(**args)
2769
+ update!(**args)
2770
+ end
2771
+
2772
+ # Update properties of this object
2773
+ def update!(**args)
2774
+ @message = args[:message] if args.key?(:message)
2775
+ @details = args[:details] if args.key?(:details)
2776
+ @code = args[:code] if args.key?(:code)
2777
+ end
2778
+ end
2779
+
2780
+ #
2781
+ class UndeleteDatasetRequest
2782
+ include Google::Apis::Core::Hashable
2783
+
2784
+ def initialize(**args)
2785
+ update!(**args)
2786
+ end
2787
+
2788
+ # Update properties of this object
2789
+ def update!(**args)
2790
+ end
2791
+ end
2792
+
2793
+ # Associates `members` with a `role`.
2794
+ class Binding
2795
+ include Google::Apis::Core::Hashable
2796
+
2797
+ # Specifies the identities requesting access for a Cloud Platform resource.
2798
+ # `members` can have the following values:
2799
+ # * `allUsers`: A special identifier that represents anyone who is
2800
+ # on the internet; with or without a Google account.
2801
+ # * `allAuthenticatedUsers`: A special identifier that represents anyone
2802
+ # who is authenticated with a Google account or a service account.
2803
+ # * `user:`emailid``: An email address that represents a specific Google
2804
+ # account. For example, `alice@gmail.com` or `joe@example.com`.
2805
+ # * `serviceAccount:`emailid``: An email address that represents a service
2806
+ # account. For example, `my-other-app@appspot.gserviceaccount.com`.
2807
+ # * `group:`emailid``: An email address that represents a Google group.
2808
+ # For example, `admins@example.com`.
2809
+ # * `domain:`domain``: A Google Apps domain name that represents all the
2810
+ # users of that domain. For example, `google.com` or `example.com`.
2811
+ # Corresponds to the JSON property `members`
2812
+ # @return [Array<String>]
2813
+ attr_accessor :members
2814
+
2815
+ # Role that is assigned to `members`.
2816
+ # For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
2817
+ # Required
2818
+ # Corresponds to the JSON property `role`
2819
+ # @return [String]
2820
+ attr_accessor :role
2821
+
2822
+ def initialize(**args)
2823
+ update!(**args)
2824
+ end
2825
+
2826
+ # Update properties of this object
2827
+ def update!(**args)
2828
+ @members = args[:members] if args.key?(:members)
2829
+ @role = args[:role] if args.key?(:role)
2830
+ end
2831
+ end
2832
+
2833
+ # A 0-based half-open genomic coordinate range for search requests.
2834
+ class Range
2835
+ include Google::Apis::Core::Hashable
2836
+
2837
+ # The start position of the range on the reference, 0-based inclusive.
2838
+ # Corresponds to the JSON property `start`
2839
+ # @return [String]
2840
+ attr_accessor :start
2841
+
2842
+ # The end position of the range on the reference, 0-based exclusive.
2843
+ # Corresponds to the JSON property `end`
2844
+ # @return [String]
2845
+ attr_accessor :end
2846
+
2847
+ # The reference sequence name, for example `chr1`,
2848
+ # `1`, or `chrX`.
2849
+ # Corresponds to the JSON property `referenceName`
2850
+ # @return [String]
2851
+ attr_accessor :reference_name
2852
+
2853
+ def initialize(**args)
2854
+ update!(**args)
2855
+ end
2856
+
2857
+ # Update properties of this object
2858
+ def update!(**args)
2859
+ @start = args[:start] if args.key?(:start)
2860
+ @end = args[:end] if args.key?(:end)
2861
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2862
+ end
2863
+ end
2864
+
2865
+ # A variant set is a collection of call sets and variants. It contains summary
2866
+ # statistics of those contents. A variant set belongs to a dataset.
2867
+ # For more genomics resource definitions, see [Fundamentals of Google
2868
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
2869
+ class VariantSet
2870
+ include Google::Apis::Core::Hashable
2871
+
2872
+ # The metadata associated with this variant set.
2873
+ # Corresponds to the JSON property `metadata`
2874
+ # @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
2875
+ attr_accessor :metadata
2876
+
2877
+ # A list of all references used by the variants in a variant set
2878
+ # with associated coordinate upper bounds for each one.
2879
+ # Corresponds to the JSON property `referenceBounds`
2880
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
2881
+ attr_accessor :reference_bounds
2882
+
2883
+ # The server-generated variant set ID, unique across all variant sets.
2884
+ # Corresponds to the JSON property `id`
2885
+ # @return [String]
2886
+ attr_accessor :id
2887
+
2888
+ # A textual description of this variant set.
2889
+ # Corresponds to the JSON property `description`
2890
+ # @return [String]
2891
+ attr_accessor :description
2892
+
2893
+ # The dataset to which this variant set belongs.
2894
+ # Corresponds to the JSON property `datasetId`
2895
+ # @return [String]
2896
+ attr_accessor :dataset_id
2897
+
2898
+ # User-specified, mutable name.
2899
+ # Corresponds to the JSON property `name`
2900
+ # @return [String]
2901
+ attr_accessor :name
2902
+
2903
+ # The reference set to which the variant set is mapped. The reference set
2904
+ # describes the alignment provenance of the variant set, while the
2905
+ # `referenceBounds` describe the shape of the actual variant data. The
2906
+ # reference set's reference names are a superset of those found in the
2907
+ # `referenceBounds`.
2908
+ # For example, given a variant set that is mapped to the GRCh38 reference set
2909
+ # and contains a single variant on reference 'X', `referenceBounds` would
2910
+ # contain only an entry for 'X', while the associated reference set
2911
+ # enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
2912
+ # Corresponds to the JSON property `referenceSetId`
2913
+ # @return [String]
2914
+ attr_accessor :reference_set_id
2915
+
2916
+ def initialize(**args)
2917
+ update!(**args)
2918
+ end
2919
+
2920
+ # Update properties of this object
2921
+ def update!(**args)
2922
+ @metadata = args[:metadata] if args.key?(:metadata)
2923
+ @reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds)
2924
+ @id = args[:id] if args.key?(:id)
2925
+ @description = args[:description] if args.key?(:description)
2926
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2927
+ @name = args[:name] if args.key?(:name)
2928
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2929
+ end
2930
+ end
2931
+
2932
+ #
2933
+ class BatchCreateAnnotationsResponse
2934
+ include Google::Apis::Core::Hashable
2935
+
2936
+ # The resulting per-annotation entries, ordered consistently with the
2937
+ # original request.
2938
+ # Corresponds to the JSON property `entries`
2939
+ # @return [Array<Google::Apis::GenomicsV1::Entry>]
2940
+ attr_accessor :entries
2941
+
2942
+ def initialize(**args)
2943
+ update!(**args)
2944
+ end
2945
+
2946
+ # Update properties of this object
2947
+ def update!(**args)
2948
+ @entries = args[:entries] if args.key?(:entries)
2949
+ end
2950
+ end
2951
+
2952
+ # ReferenceBound records an upper bound for the starting coordinate of
2953
+ # variants in a particular reference.
2954
+ class ReferenceBound
2955
+ include Google::Apis::Core::Hashable
2956
+
2957
+ # An upper bound (inclusive) on the starting coordinate of any
2958
+ # variant in the reference sequence.
2959
+ # Corresponds to the JSON property `upperBound`
2960
+ # @return [String]
2961
+ attr_accessor :upper_bound
2962
+
2963
+ # The name of the reference associated with this reference bound.
2964
+ # Corresponds to the JSON property `referenceName`
2965
+ # @return [String]
2966
+ attr_accessor :reference_name
2967
+
2968
+ def initialize(**args)
2969
+ update!(**args)
2970
+ end
2971
+
2972
+ # Update properties of this object
2973
+ def update!(**args)
2974
+ @upper_bound = args[:upper_bound] if args.key?(:upper_bound)
2975
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2976
+ end
2977
+ end
2978
+
2979
+ # The call set search response.
2980
+ class SearchCallSetsResponse
2981
+ include Google::Apis::Core::Hashable
2982
+
2983
+ # The continuation token, which is used to page through large result sets.
2984
+ # Provide this value in a subsequent request to return the next page of
2985
+ # results. This field will be empty if there aren't any additional results.
2986
+ # Corresponds to the JSON property `nextPageToken`
2987
+ # @return [String]
2988
+ attr_accessor :next_page_token
2989
+
2990
+ # The list of matching call sets.
2991
+ # Corresponds to the JSON property `callSets`
2992
+ # @return [Array<Google::Apis::GenomicsV1::CallSet>]
2993
+ attr_accessor :call_sets
2994
+
2995
+ def initialize(**args)
2996
+ update!(**args)
2997
+ end
2998
+
2999
+ # Update properties of this object
3000
+ def update!(**args)
3001
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3002
+ @call_sets = args[:call_sets] if args.key?(:call_sets)
3003
+ end
3004
+ end
3005
+
3006
+ # A variant represents a change in DNA sequence relative to a reference
3007
+ # sequence. For example, a variant could represent a SNP or an insertion.
3008
+ # Variants belong to a variant set.
3009
+ # For more genomics resource definitions, see [Fundamentals of Google
3010
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
3011
+ # Each of the calls on a variant represent a determination of genotype with
3012
+ # respect to that variant. For example, a call might assign probability of 0.32
3013
+ # to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
3014
+ # belongs to a call set, which contains related calls typically from one
3015
+ # sample.
3016
+ class Variant
3017
+ include Google::Apis::Core::Hashable
3018
+
3019
+ # A measure of how likely this variant is to be real.
3020
+ # A higher value is better.
3021
+ # Corresponds to the JSON property `quality`
3022
+ # @return [Float]
3023
+ attr_accessor :quality
3024
+
3025
+ # The server-generated variant ID, unique across all variants.
3026
+ # Corresponds to the JSON property `id`
3027
+ # @return [String]
3028
+ attr_accessor :id
3029
+
3030
+ # The ID of the variant set this variant belongs to.
3031
+ # Corresponds to the JSON property `variantSetId`
3032
+ # @return [String]
3033
+ attr_accessor :variant_set_id
3034
+
3035
+ # The reference on which this variant occurs.
3036
+ # (such as `chr20` or `X`)
3037
+ # Corresponds to the JSON property `referenceName`
3038
+ # @return [String]
3039
+ attr_accessor :reference_name
3040
+
3041
+ # A map of additional variant information. This must be of the form
3042
+ # map<string, string[]> (string key mapping to a list of string values).
3043
+ # Corresponds to the JSON property `info`
3044
+ # @return [Hash<String,Array<Object>>]
3045
+ attr_accessor :info
3046
+
3047
+ # The reference bases for this variant. They start at the given
3048
+ # position.
3049
+ # Corresponds to the JSON property `referenceBases`
3050
+ # @return [String]
3051
+ attr_accessor :reference_bases
3052
+
3053
+ # Names for the variant, for example a RefSNP ID.
3054
+ # Corresponds to the JSON property `names`
3055
+ # @return [Array<String>]
3056
+ attr_accessor :names
3057
+
3058
+ # The bases that appear instead of the reference bases.
3059
+ # Corresponds to the JSON property `alternateBases`
3060
+ # @return [Array<String>]
3061
+ attr_accessor :alternate_bases
3062
+
3063
+ # The end position (0-based) of this variant. This corresponds to the first
3064
+ # base after the last base in the reference allele. So, the length of
3065
+ # the reference allele is (end - start). This is useful for variants
3066
+ # that don't explicitly give alternate bases, for example large deletions.
3067
+ # Corresponds to the JSON property `end`
3068
+ # @return [String]
3069
+ attr_accessor :end
3070
+
3071
+ # A list of filters (normally quality filters) this variant has failed.
3072
+ # `PASS` indicates this variant has passed all filters.
3073
+ # Corresponds to the JSON property `filter`
3074
+ # @return [Array<String>]
3075
+ attr_accessor :filter
3076
+
3077
+ # The variant calls for this particular variant. Each one represents the
3078
+ # determination of genotype with respect to this variant.
3079
+ # Corresponds to the JSON property `calls`
3080
+ # @return [Array<Google::Apis::GenomicsV1::VariantCall>]
3081
+ attr_accessor :calls
3082
+
3083
+ # The date this variant was created, in milliseconds from the epoch.
3084
+ # Corresponds to the JSON property `created`
3085
+ # @return [String]
3086
+ attr_accessor :created
3087
+
3088
+ # The position at which this variant occurs (0-based).
3089
+ # This corresponds to the first base of the string of reference bases.
3090
+ # Corresponds to the JSON property `start`
3091
+ # @return [String]
3092
+ attr_accessor :start
3093
+
3094
+ def initialize(**args)
3095
+ update!(**args)
3096
+ end
3097
+
3098
+ # Update properties of this object
3099
+ def update!(**args)
3100
+ @quality = args[:quality] if args.key?(:quality)
3101
+ @id = args[:id] if args.key?(:id)
3102
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
3103
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
3104
+ @info = args[:info] if args.key?(:info)
3105
+ @reference_bases = args[:reference_bases] if args.key?(:reference_bases)
3106
+ @names = args[:names] if args.key?(:names)
3107
+ @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3108
+ @end = args[:end] if args.key?(:end)
3109
+ @filter = args[:filter] if args.key?(:filter)
3110
+ @calls = args[:calls] if args.key?(:calls)
3111
+ @created = args[:created] if args.key?(:created)
3112
+ @start = args[:start] if args.key?(:start)
3113
+ end
3114
+ end
3115
+
3116
+ # The response message for Operations.ListOperations.
3117
+ class ListOperationsResponse
3118
+ include Google::Apis::Core::Hashable
3119
+
3120
+ # The standard List next-page token.
3121
+ # Corresponds to the JSON property `nextPageToken`
3122
+ # @return [String]
3123
+ attr_accessor :next_page_token
3124
+
3125
+ # A list of operations that matches the specified filter in the request.
3126
+ # Corresponds to the JSON property `operations`
3127
+ # @return [Array<Google::Apis::GenomicsV1::Operation>]
3128
+ attr_accessor :operations
3129
+
3130
+ def initialize(**args)
3131
+ update!(**args)
3132
+ end
3133
+
3134
+ # Update properties of this object
3135
+ def update!(**args)
3136
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3137
+ @operations = args[:operations] if args.key?(:operations)
3138
+ end
3139
+ end
3140
+
3141
+ # Metadata describing an Operation.
3142
+ class OperationMetadata
3143
+ include Google::Apis::Core::Hashable
3144
+
3145
+ # Optional event messages that were generated during the job's execution.
3146
+ # This also contains any warnings that were generated during import
3147
+ # or export.
3148
+ # Corresponds to the JSON property `events`
3149
+ # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
3150
+ attr_accessor :events
3151
+
3152
+ # The time at which the job stopped running.
3153
+ # Corresponds to the JSON property `endTime`
3154
+ # @return [String]
3155
+ attr_accessor :end_time
3156
+
3157
+ # The time at which the job began to run.
3158
+ # Corresponds to the JSON property `startTime`
3159
+ # @return [String]
3160
+ attr_accessor :start_time
3161
+
3162
+ # The original request that started the operation. Note that this will be in
3163
+ # current version of the API. If the operation was started with v1beta2 API
3164
+ # and a GetOperation is performed on v1 API, a v1 request will be returned.
3165
+ # Corresponds to the JSON property `request`
3166
+ # @return [Hash<String,Object>]
3167
+ attr_accessor :request
3168
+
3169
+ # Runtime metadata on this Operation.
3170
+ # Corresponds to the JSON property `runtimeMetadata`
3171
+ # @return [Hash<String,Object>]
3172
+ attr_accessor :runtime_metadata
3173
+
3174
+ # The time at which the job was submitted to the Genomics service.
3175
+ # Corresponds to the JSON property `createTime`
3176
+ # @return [String]
3177
+ attr_accessor :create_time
3178
+
3179
+ # Optionally provided by the caller when submitting the request that creates
3180
+ # the operation.
3181
+ # Corresponds to the JSON property `labels`
3182
+ # @return [Hash<String,String>]
3183
+ attr_accessor :labels
3184
+
3185
+ # The Google Cloud Project in which the job is scoped.
3186
+ # Corresponds to the JSON property `projectId`
3187
+ # @return [String]
3188
+ attr_accessor :project_id
3189
+
3190
+ # This field is deprecated. Use `labels` instead. Optionally provided by the
3191
+ # caller when submitting the request that creates the operation.
3192
+ # Corresponds to the JSON property `clientId`
3193
+ # @return [String]
3194
+ attr_accessor :client_id
3195
+
3196
+ def initialize(**args)
3197
+ update!(**args)
3198
+ end
3199
+
3200
+ # Update properties of this object
3201
+ def update!(**args)
3202
+ @events = args[:events] if args.key?(:events)
3203
+ @end_time = args[:end_time] if args.key?(:end_time)
3204
+ @start_time = args[:start_time] if args.key?(:start_time)
3205
+ @request = args[:request] if args.key?(:request)
3206
+ @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
3207
+ @create_time = args[:create_time] if args.key?(:create_time)
3208
+ @labels = args[:labels] if args.key?(:labels)
3209
+ @project_id = args[:project_id] if args.key?(:project_id)
3210
+ @client_id = args[:client_id] if args.key?(:client_id)
3211
+ end
3212
+ end
3213
+
3214
+ # The variant search request.
3215
+ class SearchVariantsRequest
3216
+ include Google::Apis::Core::Hashable
3217
+
3218
+ # The maximum number of variants to return in a single page. If unspecified,
3219
+ # defaults to 5000. The maximum value is 10000.
3220
+ # Corresponds to the JSON property `pageSize`
3221
+ # @return [Fixnum]
3222
+ attr_accessor :page_size
3223
+
3224
+ # Only return variant calls which belong to call sets with these ids.
3225
+ # Leaving this blank returns all variant calls. If a variant has no
3226
+ # calls belonging to any of these call sets, it won't be returned at all.
3227
+ # Corresponds to the JSON property `callSetIds`
3228
+ # @return [Array<String>]
3229
+ attr_accessor :call_set_ids
3230
+
3231
+ # Only return variants which have exactly this name.
3232
+ # Corresponds to the JSON property `variantName`
3233
+ # @return [String]
3234
+ attr_accessor :variant_name
3235
+
3236
+ # The beginning of the window (0-based, inclusive) for which
3237
+ # overlapping variants should be returned. If unspecified, defaults to 0.
3238
+ # Corresponds to the JSON property `start`
3239
+ # @return [String]
3240
+ attr_accessor :start
3241
+
3242
+ # Required. Only return variants in this reference sequence.
3243
+ # Corresponds to the JSON property `referenceName`
3244
+ # @return [String]
3245
+ attr_accessor :reference_name
3246
+
3247
+ # At most one variant set ID must be provided. Only variants from this
3248
+ # variant set will be returned. If omitted, a call set id must be included in
3249
+ # the request.
3250
+ # Corresponds to the JSON property `variantSetIds`
3251
+ # @return [Array<String>]
3252
+ attr_accessor :variant_set_ids
3253
+
3254
+ # The end of the window, 0-based exclusive. If unspecified or 0, defaults to
3255
+ # the length of the reference.
3256
+ # Corresponds to the JSON property `end`
3257
+ # @return [String]
3258
+ attr_accessor :end
3259
+
3260
+ # The continuation token, which is used to page through large result sets.
3261
+ # To get the next page of results, set this parameter to the value of
3262
+ # `nextPageToken` from the previous response.
3263
+ # Corresponds to the JSON property `pageToken`
3264
+ # @return [String]
3265
+ attr_accessor :page_token
3266
+
3267
+ # The maximum number of calls to return in a single page. Note that this
3268
+ # limit may be exceeded in the event that a matching variant contains more
3269
+ # calls than the requested maximum. If unspecified, defaults to 5000. The
3270
+ # maximum value is 10000.
3271
+ # Corresponds to the JSON property `maxCalls`
3272
+ # @return [Fixnum]
3273
+ attr_accessor :max_calls
3274
+
3275
+ def initialize(**args)
3276
+ update!(**args)
3277
+ end
3278
+
3279
+ # Update properties of this object
3280
+ def update!(**args)
3281
+ @page_size = args[:page_size] if args.key?(:page_size)
3282
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
3283
+ @variant_name = args[:variant_name] if args.key?(:variant_name)
3284
+ @start = args[:start] if args.key?(:start)
3285
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
3286
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
3287
+ @end = args[:end] if args.key?(:end)
3288
+ @page_token = args[:page_token] if args.key?(:page_token)
3289
+ @max_calls = args[:max_calls] if args.key?(:max_calls)
3290
+ end
3291
+ end
3292
+
3293
+ # The read group set search request.
3294
+ class SearchReadGroupSetsRequest
3295
+ include Google::Apis::Core::Hashable
3296
+
3297
+ # Restricts this query to read group sets within the given datasets. At least
3298
+ # one ID must be provided.
3299
+ # Corresponds to the JSON property `datasetIds`
3300
+ # @return [Array<String>]
3301
+ attr_accessor :dataset_ids
3302
+
3303
+ # Only return read group sets for which a substring of the name matches this
3304
+ # string.
3305
+ # Corresponds to the JSON property `name`
3306
+ # @return [String]
3307
+ attr_accessor :name
3308
+
3309
+ # The continuation token, which is used to page through large result sets.
3310
+ # To get the next page of results, set this parameter to the value of
3311
+ # `nextPageToken` from the previous response.
3312
+ # Corresponds to the JSON property `pageToken`
3313
+ # @return [String]
3314
+ attr_accessor :page_token
3315
+
3316
+ # The maximum number of results to return in a single page. If unspecified,
3317
+ # defaults to 256. The maximum value is 1024.
3318
+ # Corresponds to the JSON property `pageSize`
3319
+ # @return [Fixnum]
3320
+ attr_accessor :page_size
3321
+
3322
+ def initialize(**args)
3323
+ update!(**args)
3324
+ end
3325
+
3326
+ # Update properties of this object
3327
+ def update!(**args)
3328
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
3329
+ @name = args[:name] if args.key?(:name)
3330
+ @page_token = args[:page_token] if args.key?(:page_token)
3331
+ @page_size = args[:page_size] if args.key?(:page_size)
3332
+ end
3333
+ end
3334
+
3335
+ #
3336
+ class SearchAnnotationsResponse
3337
+ include Google::Apis::Core::Hashable
3338
+
3339
+ # The continuation token, which is used to page through large result sets.
3340
+ # Provide this value in a subsequent request to return the next page of
3341
+ # results. This field will be empty if there aren't any additional results.
3342
+ # Corresponds to the JSON property `nextPageToken`
3343
+ # @return [String]
3344
+ attr_accessor :next_page_token
3345
+
3346
+ # The matching annotations.
3347
+ # Corresponds to the JSON property `annotations`
3348
+ # @return [Array<Google::Apis::GenomicsV1::Annotation>]
3349
+ attr_accessor :annotations
3350
+
3351
+ def initialize(**args)
3352
+ update!(**args)
3353
+ end
3354
+
3355
+ # Update properties of this object
3356
+ def update!(**args)
3357
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3358
+ @annotations = args[:annotations] if args.key?(:annotations)
3359
+ end
3360
+ end
3361
+
3362
+ #
3363
+ class ClinicalCondition
3364
+ include Google::Apis::Core::Hashable
3365
+
3366
+ # The OMIM id for this condition.
3367
+ # Search for these IDs at http://omim.org/
3368
+ # Corresponds to the JSON property `omimId`
3369
+ # @return [String]
3370
+ attr_accessor :omim_id
3371
+
3372
+ # The set of external IDs for this condition.
3373
+ # Corresponds to the JSON property `externalIds`
3374
+ # @return [Array<Google::Apis::GenomicsV1::ExternalId>]
3375
+ attr_accessor :external_ids
3376
+
3377
+ # The MedGen concept id associated with this gene.
3378
+ # Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
3379
+ # Corresponds to the JSON property `conceptId`
3380
+ # @return [String]
3381
+ attr_accessor :concept_id
3382
+
3383
+ # A set of names for the condition.
3384
+ # Corresponds to the JSON property `names`
3385
+ # @return [Array<String>]
3386
+ attr_accessor :names
3387
+
3388
+ def initialize(**args)
3389
+ update!(**args)
3390
+ end
3391
+
3392
+ # Update properties of this object
3393
+ def update!(**args)
3394
+ @omim_id = args[:omim_id] if args.key?(:omim_id)
3395
+ @external_ids = args[:external_ids] if args.key?(:external_ids)
3396
+ @concept_id = args[:concept_id] if args.key?(:concept_id)
3397
+ @names = args[:names] if args.key?(:names)
3398
+ end
3399
+ end
3400
+
3401
+ # The read search response.
3402
+ class SearchReadsResponse
3403
+ include Google::Apis::Core::Hashable
3404
+
3405
+ # The continuation token, which is used to page through large result sets.
3406
+ # Provide this value in a subsequent request to return the next page of
3407
+ # results. This field will be empty if there aren't any additional results.
3408
+ # Corresponds to the JSON property `nextPageToken`
3409
+ # @return [String]
3410
+ attr_accessor :next_page_token
3411
+
3412
+ # The list of matching alignments sorted by mapped genomic coordinate,
3413
+ # if any, ascending in position within the same reference. Unmapped reads,
3414
+ # which have no position, are returned contiguously and are sorted in
3415
+ # ascending lexicographic order by fragment name.
3416
+ # Corresponds to the JSON property `alignments`
3417
+ # @return [Array<Google::Apis::GenomicsV1::Read>]
3418
+ attr_accessor :alignments
3419
+
3420
+ def initialize(**args)
3421
+ update!(**args)
3422
+ end
3423
+
3424
+ # Update properties of this object
3425
+ def update!(**args)
3426
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3427
+ @alignments = args[:alignments] if args.key?(:alignments)
3428
+ end
3429
+ end
3430
+
3431
+ #
3432
+ class Program
3433
+ include Google::Apis::Core::Hashable
3434
+
3435
+ # The display name of the program. This is typically the colloquial name of
3436
+ # the tool used, for example 'bwa' or 'picard'.
3437
+ # Corresponds to the JSON property `name`
3438
+ # @return [String]
3439
+ attr_accessor :name
3440
+
3441
+ # The command line used to run this program.
3442
+ # Corresponds to the JSON property `commandLine`
3443
+ # @return [String]
3444
+ attr_accessor :command_line
3445
+
3446
+ # The ID of the program run before this one.
3447
+ # Corresponds to the JSON property `prevProgramId`
3448
+ # @return [String]
3449
+ attr_accessor :prev_program_id
3450
+
3451
+ # The user specified locally unique ID of the program. Used along with
3452
+ # `prevProgramId` to define an ordering between programs.
3453
+ # Corresponds to the JSON property `id`
3454
+ # @return [String]
3455
+ attr_accessor :id
3456
+
3457
+ # The version of the program run.
3458
+ # Corresponds to the JSON property `version`
3459
+ # @return [String]
3460
+ attr_accessor :version
3461
+
3462
+ def initialize(**args)
3463
+ update!(**args)
3464
+ end
3465
+
3466
+ # Update properties of this object
3467
+ def update!(**args)
3468
+ @name = args[:name] if args.key?(:name)
3469
+ @command_line = args[:command_line] if args.key?(:command_line)
3470
+ @prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
3471
+ @id = args[:id] if args.key?(:id)
3472
+ @version = args[:version] if args.key?(:version)
3473
+ end
3474
+ end
3475
+ end
3476
+ end
3477
+ end