lemboy-google-api-client 0.9.26

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (555) hide show
  1. checksums.yaml +7 -0
  2. data/.gitignore +20 -0
  3. data/.rspec +2 -0
  4. data/.rubocop.yml +7 -0
  5. data/.rubocop_todo.yml +63 -0
  6. data/.travis.yml +27 -0
  7. data/.yardopts +12 -0
  8. data/CHANGELOG.md +309 -0
  9. data/CONTRIBUTING.md +31 -0
  10. data/Gemfile +53 -0
  11. data/LICENSE +202 -0
  12. data/MIGRATING.md +171 -0
  13. data/README.md +327 -0
  14. data/Rakefile +2 -0
  15. data/api_names.yaml +36215 -0
  16. data/bin/generate-api +109 -0
  17. data/generated/google/apis/adexchangebuyer2_v2beta1.rb +35 -0
  18. data/generated/google/apis/adexchangebuyer2_v2beta1/classes.rb +298 -0
  19. data/generated/google/apis/adexchangebuyer2_v2beta1/representations.rb +122 -0
  20. data/generated/google/apis/adexchangebuyer2_v2beta1/service.rb +458 -0
  21. data/generated/google/apis/adexchangebuyer_v1_3.rb +35 -0
  22. data/generated/google/apis/adexchangebuyer_v1_3/classes.rb +1335 -0
  23. data/generated/google/apis/adexchangebuyer_v1_3/representations.rb +446 -0
  24. data/generated/google/apis/adexchangebuyer_v1_3/service.rb +872 -0
  25. data/generated/google/apis/adexchangebuyer_v1_4.rb +35 -0
  26. data/generated/google/apis/adexchangebuyer_v1_4/classes.rb +3550 -0
  27. data/generated/google/apis/adexchangebuyer_v1_4/representations.rb +1421 -0
  28. data/generated/google/apis/adexchangebuyer_v1_4/service.rb +1538 -0
  29. data/generated/google/apis/adexchangeseller_v2_0.rb +37 -0
  30. data/generated/google/apis/adexchangeseller_v2_0/classes.rb +792 -0
  31. data/generated/google/apis/adexchangeseller_v2_0/representations.rb +347 -0
  32. data/generated/google/apis/adexchangeseller_v2_0/service.rb +667 -0
  33. data/generated/google/apis/admin_datatransfer_v1.rb +37 -0
  34. data/generated/google/apis/admin_datatransfer_v1/classes.rb +267 -0
  35. data/generated/google/apis/admin_datatransfer_v1/representations.rb +130 -0
  36. data/generated/google/apis/admin_datatransfer_v1/service.rb +262 -0
  37. data/generated/google/apis/admin_directory_v1.rb +113 -0
  38. data/generated/google/apis/admin_directory_v1/classes.rb +3241 -0
  39. data/generated/google/apis/admin_directory_v1/representations.rb +1172 -0
  40. data/generated/google/apis/admin_directory_v1/service.rb +3857 -0
  41. data/generated/google/apis/admin_reports_v1.rb +38 -0
  42. data/generated/google/apis/admin_reports_v1/classes.rb +582 -0
  43. data/generated/google/apis/admin_reports_v1/representations.rb +257 -0
  44. data/generated/google/apis/admin_reports_v1/service.rb +336 -0
  45. data/generated/google/apis/adsense_v1_4.rb +37 -0
  46. data/generated/google/apis/adsense_v1_4/classes.rb +1280 -0
  47. data/generated/google/apis/adsense_v1_4/representations.rb +555 -0
  48. data/generated/google/apis/adsense_v1_4/service.rb +1713 -0
  49. data/generated/google/apis/adsensehost_v4_1.rb +35 -0
  50. data/generated/google/apis/adsensehost_v4_1/classes.rb +836 -0
  51. data/generated/google/apis/adsensehost_v4_1/representations.rb +367 -0
  52. data/generated/google/apis/adsensehost_v4_1/service.rb +1164 -0
  53. data/generated/google/apis/analytics_v3.rb +49 -0
  54. data/generated/google/apis/analytics_v3/classes.rb +5536 -0
  55. data/generated/google/apis/analytics_v3/representations.rb +1992 -0
  56. data/generated/google/apis/analytics_v3/service.rb +3785 -0
  57. data/generated/google/apis/analyticsreporting_v4.rb +37 -0
  58. data/generated/google/apis/analyticsreporting_v4/classes.rb +1420 -0
  59. data/generated/google/apis/analyticsreporting_v4/representations.rb +598 -0
  60. data/generated/google/apis/analyticsreporting_v4/service.rb +88 -0
  61. data/generated/google/apis/androidenterprise_v1.rb +34 -0
  62. data/generated/google/apis/androidenterprise_v1/classes.rb +2250 -0
  63. data/generated/google/apis/androidenterprise_v1/representations.rb +970 -0
  64. data/generated/google/apis/androidenterprise_v1/service.rb +3267 -0
  65. data/generated/google/apis/androidpublisher_v2.rb +34 -0
  66. data/generated/google/apis/androidpublisher_v2/classes.rb +1941 -0
  67. data/generated/google/apis/androidpublisher_v2/representations.rb +975 -0
  68. data/generated/google/apis/androidpublisher_v2/service.rb +2572 -0
  69. data/generated/google/apis/appengine_v1beta4.rb +35 -0
  70. data/generated/google/apis/appengine_v1beta4/classes.rb +1585 -0
  71. data/generated/google/apis/appengine_v1beta4/representations.rb +542 -0
  72. data/generated/google/apis/appengine_v1beta4/service.rb +477 -0
  73. data/generated/google/apis/appengine_v1beta5.rb +40 -0
  74. data/generated/google/apis/appengine_v1beta5/classes.rb +1984 -0
  75. data/generated/google/apis/appengine_v1beta5/representations.rb +765 -0
  76. data/generated/google/apis/appengine_v1beta5/service.rb +864 -0
  77. data/generated/google/apis/appsactivity_v1.rb +46 -0
  78. data/generated/google/apis/appsactivity_v1/classes.rb +415 -0
  79. data/generated/google/apis/appsactivity_v1/representations.rb +209 -0
  80. data/generated/google/apis/appsactivity_v1/service.rb +128 -0
  81. data/generated/google/apis/appstate_v1.rb +34 -0
  82. data/generated/google/apis/appstate_v1/classes.rb +154 -0
  83. data/generated/google/apis/appstate_v1/representations.rb +87 -0
  84. data/generated/google/apis/appstate_v1/service.rb +260 -0
  85. data/generated/google/apis/autoscaler_v1beta2.rb +38 -0
  86. data/generated/google/apis/autoscaler_v1beta2/classes.rb +710 -0
  87. data/generated/google/apis/autoscaler_v1beta2/representations.rb +296 -0
  88. data/generated/google/apis/autoscaler_v1beta2/service.rb +478 -0
  89. data/generated/google/apis/bigquery_v2.rb +52 -0
  90. data/generated/google/apis/bigquery_v2/classes.rb +3081 -0
  91. data/generated/google/apis/bigquery_v2/representations.rb +1094 -0
  92. data/generated/google/apis/bigquery_v2/service.rb +988 -0
  93. data/generated/google/apis/blogger_v3.rb +37 -0
  94. data/generated/google/apis/blogger_v3/classes.rb +1354 -0
  95. data/generated/google/apis/blogger_v3/representations.rb +632 -0
  96. data/generated/google/apis/blogger_v3/service.rb +1587 -0
  97. data/generated/google/apis/books_v1.rb +34 -0
  98. data/generated/google/apis/books_v1/classes.rb +4160 -0
  99. data/generated/google/apis/books_v1/representations.rb +1799 -0
  100. data/generated/google/apis/books_v1/service.rb +2300 -0
  101. data/generated/google/apis/calendar_v3.rb +37 -0
  102. data/generated/google/apis/calendar_v3/classes.rb +1742 -0
  103. data/generated/google/apis/calendar_v3/representations.rb +631 -0
  104. data/generated/google/apis/calendar_v3/service.rb +1968 -0
  105. data/generated/google/apis/civicinfo_v2.rb +32 -0
  106. data/generated/google/apis/civicinfo_v2/classes.rb +1499 -0
  107. data/generated/google/apis/civicinfo_v2/representations.rb +572 -0
  108. data/generated/google/apis/civicinfo_v2/service.rb +300 -0
  109. data/generated/google/apis/classroom_v1.rb +70 -0
  110. data/generated/google/apis/classroom_v1/classes.rb +1572 -0
  111. data/generated/google/apis/classroom_v1/representations.rb +729 -0
  112. data/generated/google/apis/classroom_v1/service.rb +1945 -0
  113. data/generated/google/apis/classroom_v1beta1.rb +49 -0
  114. data/generated/google/apis/classroom_v1beta1/classes.rb +447 -0
  115. data/generated/google/apis/classroom_v1beta1/representations.rb +190 -0
  116. data/generated/google/apis/classroom_v1beta1/service.rb +791 -0
  117. data/generated/google/apis/cloudbilling_v1.rb +35 -0
  118. data/generated/google/apis/cloudbilling_v1/classes.rb +169 -0
  119. data/generated/google/apis/cloudbilling_v1/representations.rb +87 -0
  120. data/generated/google/apis/cloudbilling_v1/service.rb +258 -0
  121. data/generated/google/apis/cloudbuild_v1.rb +34 -0
  122. data/generated/google/apis/cloudbuild_v1/classes.rb +919 -0
  123. data/generated/google/apis/cloudbuild_v1/representations.rb +364 -0
  124. data/generated/google/apis/cloudbuild_v1/service.rb +492 -0
  125. data/generated/google/apis/clouddebugger_v2.rb +38 -0
  126. data/generated/google/apis/clouddebugger_v2/classes.rb +1081 -0
  127. data/generated/google/apis/clouddebugger_v2/representations.rb +465 -0
  128. data/generated/google/apis/clouddebugger_v2/service.rb +396 -0
  129. data/generated/google/apis/cloudkms_v1beta1.rb +34 -0
  130. data/generated/google/apis/cloudkms_v1beta1/classes.rb +999 -0
  131. data/generated/google/apis/cloudkms_v1beta1/representations.rb +448 -0
  132. data/generated/google/apis/cloudkms_v1beta1/service.rb +932 -0
  133. data/generated/google/apis/cloudlatencytest_v2.rb +34 -0
  134. data/generated/google/apis/cloudlatencytest_v2/classes.rb +195 -0
  135. data/generated/google/apis/cloudlatencytest_v2/representations.rb +127 -0
  136. data/generated/google/apis/cloudlatencytest_v2/service.rb +135 -0
  137. data/generated/google/apis/cloudmonitoring_v2beta2.rb +37 -0
  138. data/generated/google/apis/cloudmonitoring_v2beta2/classes.rb +679 -0
  139. data/generated/google/apis/cloudmonitoring_v2beta2/representations.rb +353 -0
  140. data/generated/google/apis/cloudmonitoring_v2beta2/service.rb +452 -0
  141. data/generated/google/apis/cloudresourcemanager_v1.rb +38 -0
  142. data/generated/google/apis/cloudresourcemanager_v1/classes.rb +886 -0
  143. data/generated/google/apis/cloudresourcemanager_v1/representations.rb +359 -0
  144. data/generated/google/apis/cloudresourcemanager_v1/service.rb +686 -0
  145. data/generated/google/apis/cloudresourcemanager_v1beta1.rb +38 -0
  146. data/generated/google/apis/cloudresourcemanager_v1beta1/classes.rb +682 -0
  147. data/generated/google/apis/cloudresourcemanager_v1beta1/representations.rb +312 -0
  148. data/generated/google/apis/cloudresourcemanager_v1beta1/service.rb +710 -0
  149. data/generated/google/apis/cloudtrace_v1.rb +43 -0
  150. data/generated/google/apis/cloudtrace_v1/classes.rb +188 -0
  151. data/generated/google/apis/cloudtrace_v1/representations.rb +102 -0
  152. data/generated/google/apis/cloudtrace_v1/service.rb +192 -0
  153. data/generated/google/apis/clouduseraccounts_beta.rb +44 -0
  154. data/generated/google/apis/clouduseraccounts_beta/classes.rb +845 -0
  155. data/generated/google/apis/clouduseraccounts_beta/representations.rb +352 -0
  156. data/generated/google/apis/clouduseraccounts_beta/service.rb +907 -0
  157. data/generated/google/apis/compute_beta.rb +49 -0
  158. data/generated/google/apis/compute_beta/classes.rb +12261 -0
  159. data/generated/google/apis/compute_beta/representations.rb +4615 -0
  160. data/generated/google/apis/compute_beta/service.rb +15330 -0
  161. data/generated/google/apis/compute_v1.rb +49 -0
  162. data/generated/google/apis/compute_v1/classes.rb +11179 -0
  163. data/generated/google/apis/compute_v1/representations.rb +4203 -0
  164. data/generated/google/apis/compute_v1/service.rb +12937 -0
  165. data/generated/google/apis/container_v1.rb +35 -0
  166. data/generated/google/apis/container_v1/classes.rb +1040 -0
  167. data/generated/google/apis/container_v1/representations.rb +415 -0
  168. data/generated/google/apis/container_v1/service.rb +659 -0
  169. data/generated/google/apis/container_v1beta1.rb +35 -0
  170. data/generated/google/apis/container_v1beta1/classes.rb +466 -0
  171. data/generated/google/apis/container_v1beta1/representations.rb +177 -0
  172. data/generated/google/apis/container_v1beta1/service.rb +394 -0
  173. data/generated/google/apis/content_v2.rb +35 -0
  174. data/generated/google/apis/content_v2/classes.rb +6887 -0
  175. data/generated/google/apis/content_v2/representations.rb +2963 -0
  176. data/generated/google/apis/content_v2/service.rb +2653 -0
  177. data/generated/google/apis/coordinate_v1.rb +37 -0
  178. data/generated/google/apis/coordinate_v1/classes.rb +669 -0
  179. data/generated/google/apis/coordinate_v1/representations.rb +321 -0
  180. data/generated/google/apis/coordinate_v1/service.rb +678 -0
  181. data/generated/google/apis/customsearch_v1.rb +31 -0
  182. data/generated/google/apis/customsearch_v1/classes.rb +771 -0
  183. data/generated/google/apis/customsearch_v1/representations.rb +302 -0
  184. data/generated/google/apis/customsearch_v1/service.rb +207 -0
  185. data/generated/google/apis/dataflow_v1b3.rb +37 -0
  186. data/generated/google/apis/dataflow_v1b3/classes.rb +4225 -0
  187. data/generated/google/apis/dataflow_v1b3/representations.rb +1809 -0
  188. data/generated/google/apis/dataflow_v1b3/service.rb +874 -0
  189. data/generated/google/apis/dataproc_v1.rb +34 -0
  190. data/generated/google/apis/dataproc_v1/classes.rb +1716 -0
  191. data/generated/google/apis/dataproc_v1/representations.rb +678 -0
  192. data/generated/google/apis/dataproc_v1/service.rb +670 -0
  193. data/generated/google/apis/datastore_v1.rb +38 -0
  194. data/generated/google/apis/datastore_v1/classes.rb +1289 -0
  195. data/generated/google/apis/datastore_v1/representations.rb +572 -0
  196. data/generated/google/apis/datastore_v1/service.rb +259 -0
  197. data/generated/google/apis/datastore_v1beta2.rb +40 -0
  198. data/generated/google/apis/datastore_v1beta2/classes.rb +1186 -0
  199. data/generated/google/apis/datastore_v1beta2/representations.rb +594 -0
  200. data/generated/google/apis/datastore_v1beta2/service.rb +294 -0
  201. data/generated/google/apis/datastore_v1beta3.rb +38 -0
  202. data/generated/google/apis/datastore_v1beta3/classes.rb +1284 -0
  203. data/generated/google/apis/datastore_v1beta3/representations.rb +572 -0
  204. data/generated/google/apis/datastore_v1beta3/service.rb +259 -0
  205. data/generated/google/apis/deploymentmanager_v2.rb +43 -0
  206. data/generated/google/apis/deploymentmanager_v2/classes.rb +1582 -0
  207. data/generated/google/apis/deploymentmanager_v2/representations.rb +686 -0
  208. data/generated/google/apis/deploymentmanager_v2/service.rb +1026 -0
  209. data/generated/google/apis/deploymentmanager_v2beta2.rb +44 -0
  210. data/generated/google/apis/deploymentmanager_v2beta2/classes.rb +843 -0
  211. data/generated/google/apis/deploymentmanager_v2beta2/representations.rb +306 -0
  212. data/generated/google/apis/deploymentmanager_v2beta2/service.rb +689 -0
  213. data/generated/google/apis/dfareporting_v2_1.rb +37 -0
  214. data/generated/google/apis/dfareporting_v2_1/classes.rb +10770 -0
  215. data/generated/google/apis/dfareporting_v2_1/representations.rb +3438 -0
  216. data/generated/google/apis/dfareporting_v2_1/service.rb +8585 -0
  217. data/generated/google/apis/dfareporting_v2_3.rb +37 -0
  218. data/generated/google/apis/dfareporting_v2_3/classes.rb +10839 -0
  219. data/generated/google/apis/dfareporting_v2_3/representations.rb +3829 -0
  220. data/generated/google/apis/dfareporting_v2_3/service.rb +8581 -0
  221. data/generated/google/apis/dfareporting_v2_5.rb +40 -0
  222. data/generated/google/apis/dfareporting_v2_5/classes.rb +11225 -0
  223. data/generated/google/apis/dfareporting_v2_5/representations.rb +3982 -0
  224. data/generated/google/apis/dfareporting_v2_5/service.rb +8755 -0
  225. data/generated/google/apis/dfareporting_v2_6.rb +40 -0
  226. data/generated/google/apis/dfareporting_v2_6/classes.rb +11586 -0
  227. data/generated/google/apis/dfareporting_v2_6/representations.rb +4119 -0
  228. data/generated/google/apis/dfareporting_v2_6/service.rb +9025 -0
  229. data/generated/google/apis/dfareporting_v2_7.rb +40 -0
  230. data/generated/google/apis/dfareporting_v2_7/classes.rb +11876 -0
  231. data/generated/google/apis/dfareporting_v2_7/representations.rb +4243 -0
  232. data/generated/google/apis/dfareporting_v2_7/service.rb +9095 -0
  233. data/generated/google/apis/discovery_v1.rb +32 -0
  234. data/generated/google/apis/discovery_v1/classes.rb +961 -0
  235. data/generated/google/apis/discovery_v1/representations.rb +397 -0
  236. data/generated/google/apis/discovery_v1/service.rb +142 -0
  237. data/generated/google/apis/dns_v1.rb +43 -0
  238. data/generated/google/apis/dns_v1/classes.rb +406 -0
  239. data/generated/google/apis/dns_v1/representations.rb +167 -0
  240. data/generated/google/apis/dns_v1/service.rb +453 -0
  241. data/generated/google/apis/dns_v2beta1.rb +43 -0
  242. data/generated/google/apis/dns_v2beta1/classes.rb +915 -0
  243. data/generated/google/apis/dns_v2beta1/representations.rb +368 -0
  244. data/generated/google/apis/dns_v2beta1/service.rb +768 -0
  245. data/generated/google/apis/doubleclickbidmanager_v1.rb +31 -0
  246. data/generated/google/apis/doubleclickbidmanager_v1/classes.rb +795 -0
  247. data/generated/google/apis/doubleclickbidmanager_v1/representations.rb +368 -0
  248. data/generated/google/apis/doubleclickbidmanager_v1/service.rb +376 -0
  249. data/generated/google/apis/doubleclicksearch_v2.rb +35 -0
  250. data/generated/google/apis/doubleclicksearch_v2/classes.rb +960 -0
  251. data/generated/google/apis/doubleclicksearch_v2/representations.rb +350 -0
  252. data/generated/google/apis/doubleclicksearch_v2/service.rb +480 -0
  253. data/generated/google/apis/drive_v2.rb +59 -0
  254. data/generated/google/apis/drive_v2/classes.rb +2633 -0
  255. data/generated/google/apis/drive_v2/representations.rb +885 -0
  256. data/generated/google/apis/drive_v2/service.rb +2754 -0
  257. data/generated/google/apis/drive_v3.rb +56 -0
  258. data/generated/google/apis/drive_v3/classes.rb +1611 -0
  259. data/generated/google/apis/drive_v3/representations.rb +555 -0
  260. data/generated/google/apis/drive_v3/service.rb +1553 -0
  261. data/generated/google/apis/fitness_v1.rb +85 -0
  262. data/generated/google/apis/fitness_v1/classes.rb +943 -0
  263. data/generated/google/apis/fitness_v1/representations.rb +380 -0
  264. data/generated/google/apis/fitness_v1/service.rb +674 -0
  265. data/generated/google/apis/fusiontables_v2.rb +37 -0
  266. data/generated/google/apis/fusiontables_v2/classes.rb +1049 -0
  267. data/generated/google/apis/fusiontables_v2/representations.rb +457 -0
  268. data/generated/google/apis/fusiontables_v2/service.rb +1463 -0
  269. data/generated/google/apis/games_configuration_v1configuration.rb +34 -0
  270. data/generated/google/apis/games_configuration_v1configuration/classes.rb +506 -0
  271. data/generated/google/apis/games_configuration_v1configuration/representations.rb +228 -0
  272. data/generated/google/apis/games_configuration_v1configuration/service.rb +565 -0
  273. data/generated/google/apis/games_management_v1management.rb +37 -0
  274. data/generated/google/apis/games_management_v1management/classes.rb +567 -0
  275. data/generated/google/apis/games_management_v1management/representations.rb +278 -0
  276. data/generated/google/apis/games_management_v1management/service.rb +994 -0
  277. data/generated/google/apis/games_v1.rb +40 -0
  278. data/generated/google/apis/games_v1/classes.rb +4667 -0
  279. data/generated/google/apis/games_v1/representations.rb +1800 -0
  280. data/generated/google/apis/games_v1/service.rb +2449 -0
  281. data/generated/google/apis/gan_v1beta1.rb +31 -0
  282. data/generated/google/apis/gan_v1beta1/classes.rb +1428 -0
  283. data/generated/google/apis/gan_v1beta1/representations.rb +462 -0
  284. data/generated/google/apis/gan_v1beta1/service.rb +682 -0
  285. data/generated/google/apis/genomics_v1.rb +46 -0
  286. data/generated/google/apis/genomics_v1/classes.rb +3477 -0
  287. data/generated/google/apis/genomics_v1/representations.rb +1284 -0
  288. data/generated/google/apis/genomics_v1/service.rb +2207 -0
  289. data/generated/google/apis/genomics_v1beta2.rb +46 -0
  290. data/generated/google/apis/genomics_v1beta2/classes.rb +3288 -0
  291. data/generated/google/apis/genomics_v1beta2/representations.rb +1194 -0
  292. data/generated/google/apis/genomics_v1beta2/service.rb +2392 -0
  293. data/generated/google/apis/gmail_v1.rb +61 -0
  294. data/generated/google/apis/gmail_v1/classes.rb +1382 -0
  295. data/generated/google/apis/gmail_v1/representations.rb +624 -0
  296. data/generated/google/apis/gmail_v1/service.rb +2447 -0
  297. data/generated/google/apis/groupsmigration_v1.rb +34 -0
  298. data/generated/google/apis/groupsmigration_v1/classes.rb +51 -0
  299. data/generated/google/apis/groupsmigration_v1/representations.rb +40 -0
  300. data/generated/google/apis/groupsmigration_v1/service.rb +110 -0
  301. data/generated/google/apis/groupssettings_v1.rb +34 -0
  302. data/generated/google/apis/groupssettings_v1/classes.rb +240 -0
  303. data/generated/google/apis/groupssettings_v1/representations.rb +69 -0
  304. data/generated/google/apis/groupssettings_v1/service.rb +179 -0
  305. data/generated/google/apis/iam_v1.rb +36 -0
  306. data/generated/google/apis/iam_v1/classes.rb +640 -0
  307. data/generated/google/apis/iam_v1/representations.rb +316 -0
  308. data/generated/google/apis/iam_v1/service.rb +554 -0
  309. data/generated/google/apis/identitytoolkit_v3.rb +37 -0
  310. data/generated/google/apis/identitytoolkit_v3/classes.rb +2182 -0
  311. data/generated/google/apis/identitytoolkit_v3/representations.rb +742 -0
  312. data/generated/google/apis/identitytoolkit_v3/service.rb +657 -0
  313. data/generated/google/apis/kgsearch_v1.rb +31 -0
  314. data/generated/google/apis/kgsearch_v1/classes.rb +59 -0
  315. data/generated/google/apis/kgsearch_v1/representations.rb +41 -0
  316. data/generated/google/apis/kgsearch_v1/service.rb +113 -0
  317. data/generated/google/apis/language_v1beta1.rb +36 -0
  318. data/generated/google/apis/language_v1beta1/classes.rb +757 -0
  319. data/generated/google/apis/language_v1beta1/representations.rb +339 -0
  320. data/generated/google/apis/language_v1beta1/service.rb +184 -0
  321. data/generated/google/apis/licensing_v1.rb +34 -0
  322. data/generated/google/apis/licensing_v1/classes.rb +132 -0
  323. data/generated/google/apis/licensing_v1/representations.rb +74 -0
  324. data/generated/google/apis/licensing_v1/service.rb +369 -0
  325. data/generated/google/apis/logging_v1beta3.rb +47 -0
  326. data/generated/google/apis/logging_v1beta3/classes.rb +1079 -0
  327. data/generated/google/apis/logging_v1beta3/representations.rb +366 -0
  328. data/generated/google/apis/logging_v1beta3/service.rb +1001 -0
  329. data/generated/google/apis/logging_v2beta1.rb +46 -0
  330. data/generated/google/apis/logging_v2beta1/classes.rb +1254 -0
  331. data/generated/google/apis/logging_v2beta1/representations.rb +421 -0
  332. data/generated/google/apis/logging_v2beta1/service.rb +788 -0
  333. data/generated/google/apis/manager_v1beta2.rb +53 -0
  334. data/generated/google/apis/manager_v1beta2/classes.rb +1287 -0
  335. data/generated/google/apis/manager_v1beta2/representations.rb +606 -0
  336. data/generated/google/apis/manager_v1beta2/service.rb +372 -0
  337. data/generated/google/apis/manufacturers_v1.rb +34 -0
  338. data/generated/google/apis/manufacturers_v1/classes.rb +258 -0
  339. data/generated/google/apis/manufacturers_v1/representations.rb +103 -0
  340. data/generated/google/apis/manufacturers_v1/service.rb +138 -0
  341. data/generated/google/apis/mirror_v1.rb +37 -0
  342. data/generated/google/apis/mirror_v1/classes.rb +1072 -0
  343. data/generated/google/apis/mirror_v1/representations.rb +390 -0
  344. data/generated/google/apis/mirror_v1/service.rb +977 -0
  345. data/generated/google/apis/monitoring_v3.rb +45 -0
  346. data/generated/google/apis/monitoring_v3/classes.rb +1335 -0
  347. data/generated/google/apis/monitoring_v3/representations.rb +516 -0
  348. data/generated/google/apis/monitoring_v3/service.rb +706 -0
  349. data/generated/google/apis/mybusiness_v3.rb +32 -0
  350. data/generated/google/apis/mybusiness_v3/classes.rb +1864 -0
  351. data/generated/google/apis/mybusiness_v3/representations.rb +741 -0
  352. data/generated/google/apis/mybusiness_v3/service.rb +960 -0
  353. data/generated/google/apis/oauth2_v2.rb +43 -0
  354. data/generated/google/apis/oauth2_v2/classes.rb +245 -0
  355. data/generated/google/apis/oauth2_v2/representations.rb +102 -0
  356. data/generated/google/apis/oauth2_v2/service.rb +199 -0
  357. data/generated/google/apis/pagespeedonline_v2.rb +32 -0
  358. data/generated/google/apis/pagespeedonline_v2/classes.rb +614 -0
  359. data/generated/google/apis/pagespeedonline_v2/representations.rb +272 -0
  360. data/generated/google/apis/pagespeedonline_v2/service.rb +119 -0
  361. data/generated/google/apis/partners_v2.rb +32 -0
  362. data/generated/google/apis/partners_v2/classes.rb +942 -0
  363. data/generated/google/apis/partners_v2/representations.rb +454 -0
  364. data/generated/google/apis/partners_v2/service.rb +400 -0
  365. data/generated/google/apis/people_v1.rb +59 -0
  366. data/generated/google/apis/people_v1/classes.rb +1521 -0
  367. data/generated/google/apis/people_v1/representations.rb +663 -0
  368. data/generated/google/apis/people_v1/service.rb +189 -0
  369. data/generated/google/apis/plus_domains_v1.rb +61 -0
  370. data/generated/google/apis/plus_domains_v1/classes.rb +2609 -0
  371. data/generated/google/apis/plus_domains_v1/representations.rb +1111 -0
  372. data/generated/google/apis/plus_domains_v1/service.rb +904 -0
  373. data/generated/google/apis/plus_v1.rb +43 -0
  374. data/generated/google/apis/plus_v1/classes.rb +2094 -0
  375. data/generated/google/apis/plus_v1/representations.rb +907 -0
  376. data/generated/google/apis/plus_v1/service.rb +470 -0
  377. data/generated/google/apis/prediction_v1_6.rb +47 -0
  378. data/generated/google/apis/prediction_v1_6/classes.rb +751 -0
  379. data/generated/google/apis/prediction_v1_6/representations.rb +369 -0
  380. data/generated/google/apis/prediction_v1_6/service.rb +380 -0
  381. data/generated/google/apis/proximitybeacon_v1beta1.rb +34 -0
  382. data/generated/google/apis/proximitybeacon_v1beta1/classes.rb +786 -0
  383. data/generated/google/apis/proximitybeacon_v1beta1/representations.rb +347 -0
  384. data/generated/google/apis/proximitybeacon_v1beta1/service.rb +806 -0
  385. data/generated/google/apis/pubsub_v1.rb +37 -0
  386. data/generated/google/apis/pubsub_v1/classes.rb +676 -0
  387. data/generated/google/apis/pubsub_v1/representations.rb +323 -0
  388. data/generated/google/apis/pubsub_v1/service.rb +900 -0
  389. data/generated/google/apis/pubsub_v1beta2.rb +37 -0
  390. data/generated/google/apis/pubsub_v1beta2/classes.rb +620 -0
  391. data/generated/google/apis/pubsub_v1beta2/representations.rb +282 -0
  392. data/generated/google/apis/pubsub_v1beta2/service.rb +774 -0
  393. data/generated/google/apis/qpx_express_v1.rb +31 -0
  394. data/generated/google/apis/qpx_express_v1/classes.rb +1274 -0
  395. data/generated/google/apis/qpx_express_v1/representations.rb +473 -0
  396. data/generated/google/apis/qpx_express_v1/service.rb +100 -0
  397. data/generated/google/apis/replicapool_v1beta2.rb +44 -0
  398. data/generated/google/apis/replicapool_v1beta2/classes.rb +631 -0
  399. data/generated/google/apis/replicapool_v1beta2/representations.rb +264 -0
  400. data/generated/google/apis/replicapool_v1beta2/service.rb +608 -0
  401. data/generated/google/apis/replicapoolupdater_v1beta1.rb +45 -0
  402. data/generated/google/apis/replicapoolupdater_v1beta1/classes.rb +733 -0
  403. data/generated/google/apis/replicapoolupdater_v1beta1/representations.rb +294 -0
  404. data/generated/google/apis/replicapoolupdater_v1beta1/service.rb +509 -0
  405. data/generated/google/apis/reseller_v1.rb +37 -0
  406. data/generated/google/apis/reseller_v1/classes.rb +540 -0
  407. data/generated/google/apis/reseller_v1/representations.rb +225 -0
  408. data/generated/google/apis/reseller_v1/service.rb +623 -0
  409. data/generated/google/apis/resourceviews_v1beta2.rb +50 -0
  410. data/generated/google/apis/resourceviews_v1beta2/classes.rb +660 -0
  411. data/generated/google/apis/resourceviews_v1beta2/representations.rb +301 -0
  412. data/generated/google/apis/resourceviews_v1beta2/service.rb +563 -0
  413. data/generated/google/apis/script_v1.rb +64 -0
  414. data/generated/google/apis/script_v1/classes.rb +265 -0
  415. data/generated/google/apis/script_v1/representations.rb +119 -0
  416. data/generated/google/apis/script_v1/service.rb +98 -0
  417. data/generated/google/apis/sheets_v4.rb +43 -0
  418. data/generated/google/apis/sheets_v4/classes.rb +6368 -0
  419. data/generated/google/apis/sheets_v4/representations.rb +2289 -0
  420. data/generated/google/apis/sheets_v4/service.rb +569 -0
  421. data/generated/google/apis/site_verification_v1.rb +37 -0
  422. data/generated/google/apis/site_verification_v1/classes.rb +185 -0
  423. data/generated/google/apis/site_verification_v1/representations.rb +113 -0
  424. data/generated/google/apis/site_verification_v1/service.rb +315 -0
  425. data/generated/google/apis/slides_v1.rb +49 -0
  426. data/generated/google/apis/slides_v1/classes.rb +4044 -0
  427. data/generated/google/apis/slides_v1/representations.rb +1765 -0
  428. data/generated/google/apis/slides_v1/service.rb +202 -0
  429. data/generated/google/apis/speech_v1beta1.rb +34 -0
  430. data/generated/google/apis/speech_v1beta1/classes.rb +513 -0
  431. data/generated/google/apis/speech_v1beta1/representations.rb +218 -0
  432. data/generated/google/apis/speech_v1beta1/service.rb +273 -0
  433. data/generated/google/apis/sqladmin_v1beta4.rb +38 -0
  434. data/generated/google/apis/sqladmin_v1beta4/classes.rb +2142 -0
  435. data/generated/google/apis/sqladmin_v1beta4/representations.rb +893 -0
  436. data/generated/google/apis/sqladmin_v1beta4/service.rb +1709 -0
  437. data/generated/google/apis/storage_v1.rb +46 -0
  438. data/generated/google/apis/storage_v1/classes.rb +1255 -0
  439. data/generated/google/apis/storage_v1/representations.rb +502 -0
  440. data/generated/google/apis/storage_v1/service.rb +1906 -0
  441. data/generated/google/apis/storagetransfer_v1.rb +35 -0
  442. data/generated/google/apis/storagetransfer_v1/classes.rb +1046 -0
  443. data/generated/google/apis/storagetransfer_v1/representations.rb +418 -0
  444. data/generated/google/apis/storagetransfer_v1/service.rb +473 -0
  445. data/generated/google/apis/tagmanager_v1.rb +52 -0
  446. data/generated/google/apis/tagmanager_v1/classes.rb +1494 -0
  447. data/generated/google/apis/tagmanager_v1/representations.rb +611 -0
  448. data/generated/google/apis/tagmanager_v1/service.rb +2119 -0
  449. data/generated/google/apis/taskqueue_v1beta2.rb +37 -0
  450. data/generated/google/apis/taskqueue_v1beta2/classes.rb +254 -0
  451. data/generated/google/apis/taskqueue_v1beta2/representations.rb +126 -0
  452. data/generated/google/apis/taskqueue_v1beta2/service.rb +408 -0
  453. data/generated/google/apis/tasks_v1.rb +37 -0
  454. data/generated/google/apis/tasks_v1/classes.rb +296 -0
  455. data/generated/google/apis/tasks_v1/representations.rb +125 -0
  456. data/generated/google/apis/tasks_v1/service.rb +643 -0
  457. data/generated/google/apis/translate_v2.rb +31 -0
  458. data/generated/google/apis/translate_v2/classes.rb +168 -0
  459. data/generated/google/apis/translate_v2/representations.rb +121 -0
  460. data/generated/google/apis/translate_v2/service.rb +182 -0
  461. data/generated/google/apis/urlshortener_v1.rb +34 -0
  462. data/generated/google/apis/urlshortener_v1/classes.rb +246 -0
  463. data/generated/google/apis/urlshortener_v1/representations.rb +121 -0
  464. data/generated/google/apis/urlshortener_v1/service.rb +176 -0
  465. data/generated/google/apis/vision_v1.rb +36 -0
  466. data/generated/google/apis/vision_v1/classes.rb +1267 -0
  467. data/generated/google/apis/vision_v1/representations.rb +418 -0
  468. data/generated/google/apis/vision_v1/service.rb +90 -0
  469. data/generated/google/apis/webmasters_v3.rb +37 -0
  470. data/generated/google/apis/webmasters_v3/classes.rb +570 -0
  471. data/generated/google/apis/webmasters_v3/representations.rb +283 -0
  472. data/generated/google/apis/webmasters_v3/service.rb +573 -0
  473. data/generated/google/apis/youtube_analytics_v1.rb +46 -0
  474. data/generated/google/apis/youtube_analytics_v1/classes.rb +337 -0
  475. data/generated/google/apis/youtube_analytics_v1/representations.rb +174 -0
  476. data/generated/google/apis/youtube_analytics_v1/service.rb +486 -0
  477. data/generated/google/apis/youtube_partner_v1.rb +37 -0
  478. data/generated/google/apis/youtube_partner_v1/classes.rb +3854 -0
  479. data/generated/google/apis/youtube_partner_v1/representations.rb +1537 -0
  480. data/generated/google/apis/youtube_partner_v1/service.rb +3269 -0
  481. data/generated/google/apis/youtube_v3.rb +50 -0
  482. data/generated/google/apis/youtube_v3/classes.rb +8375 -0
  483. data/generated/google/apis/youtube_v3/representations.rb +3273 -0
  484. data/generated/google/apis/youtube_v3/service.rb +4440 -0
  485. data/generated/google/apis/youtubereporting_v1.rb +38 -0
  486. data/generated/google/apis/youtubereporting_v1/classes.rb +302 -0
  487. data/generated/google/apis/youtubereporting_v1/representations.rb +149 -0
  488. data/generated/google/apis/youtubereporting_v1/service.rb +385 -0
  489. data/google-api-client.gemspec +33 -0
  490. data/lib/cacerts.pem +2183 -0
  491. data/lib/google/api_client/auth/installed_app.rb +128 -0
  492. data/lib/google/api_client/auth/key_utils.rb +94 -0
  493. data/lib/google/api_client/auth/storage.rb +104 -0
  494. data/lib/google/api_client/auth/storages/file_store.rb +57 -0
  495. data/lib/google/api_client/auth/storages/redis_store.rb +59 -0
  496. data/lib/google/api_client/client_secrets.rb +177 -0
  497. data/lib/google/apis.rb +58 -0
  498. data/lib/google/apis/core/api_command.rb +146 -0
  499. data/lib/google/apis/core/base_service.rb +401 -0
  500. data/lib/google/apis/core/batch.rb +239 -0
  501. data/lib/google/apis/core/download.rb +108 -0
  502. data/lib/google/apis/core/hashable.rb +44 -0
  503. data/lib/google/apis/core/http_client_adapter.rb +82 -0
  504. data/lib/google/apis/core/http_command.rb +332 -0
  505. data/lib/google/apis/core/json_representation.rb +145 -0
  506. data/lib/google/apis/core/logging.rb +30 -0
  507. data/lib/google/apis/core/multipart.rb +187 -0
  508. data/lib/google/apis/core/upload.rb +295 -0
  509. data/lib/google/apis/errors.rb +80 -0
  510. data/lib/google/apis/generator.rb +70 -0
  511. data/lib/google/apis/generator/annotator.rb +301 -0
  512. data/lib/google/apis/generator/helpers.rb +74 -0
  513. data/lib/google/apis/generator/model.rb +143 -0
  514. data/lib/google/apis/generator/template.rb +124 -0
  515. data/lib/google/apis/generator/templates/_class.tmpl +40 -0
  516. data/lib/google/apis/generator/templates/_method.tmpl +92 -0
  517. data/lib/google/apis/generator/templates/_representation.tmpl +51 -0
  518. data/lib/google/apis/generator/templates/_representation_stub.tmpl +17 -0
  519. data/lib/google/apis/generator/templates/_representation_type.tmpl +10 -0
  520. data/lib/google/apis/generator/templates/classes.rb.tmpl +29 -0
  521. data/lib/google/apis/generator/templates/module.rb.tmpl +40 -0
  522. data/lib/google/apis/generator/templates/representations.rb.tmpl +32 -0
  523. data/lib/google/apis/generator/templates/service.rb.tmpl +60 -0
  524. data/lib/google/apis/options.rb +85 -0
  525. data/lib/google/apis/version.rb +39 -0
  526. data/rakelib/metrics.rake +22 -0
  527. data/rakelib/rubocop.rake +10 -0
  528. data/rakelib/spec.rake +11 -0
  529. data/rakelib/yard.rake +11 -0
  530. data/samples/cli/.env +4 -0
  531. data/samples/cli/Gemfile +7 -0
  532. data/samples/cli/README.md +51 -0
  533. data/samples/cli/google-api-samples +32 -0
  534. data/samples/cli/lib/base_cli.rb +95 -0
  535. data/samples/cli/lib/samples/analytics.rb +62 -0
  536. data/samples/cli/lib/samples/androidpublisher.rb +47 -0
  537. data/samples/cli/lib/samples/bigquery.rb +101 -0
  538. data/samples/cli/lib/samples/calendar.rb +83 -0
  539. data/samples/cli/lib/samples/drive.rb +82 -0
  540. data/samples/cli/lib/samples/gmail.rb +124 -0
  541. data/samples/cli/lib/samples/pubsub.rb +114 -0
  542. data/samples/cli/lib/samples/sheets.rb +61 -0
  543. data/samples/cli/lib/samples/translate.rb +44 -0
  544. data/samples/cli/lib/samples/you_tube.rb +44 -0
  545. data/samples/web/.env +2 -0
  546. data/samples/web/Gemfile +7 -0
  547. data/samples/web/README.md +44 -0
  548. data/samples/web/app.rb +120 -0
  549. data/samples/web/views/calendar.erb +34 -0
  550. data/samples/web/views/drive.erb +33 -0
  551. data/samples/web/views/home.erb +34 -0
  552. data/samples/web/views/layout.erb +40 -0
  553. data/sync.rb +71 -0
  554. data/third_party/hurley_patches.rb +103 -0
  555. metadata +735 -0
@@ -0,0 +1,46 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'google/apis/genomics_v1/service.rb'
16
+ require 'google/apis/genomics_v1/classes.rb'
17
+ require 'google/apis/genomics_v1/representations.rb'
18
+
19
+ module Google
20
+ module Apis
21
+ # Genomics API
22
+ #
23
+ # Upload, process, query, and search Genomics data in the cloud.
24
+ #
25
+ # @see https://cloud.google.com/genomics
26
+ module GenomicsV1
27
+ VERSION = 'V1'
28
+ REVISION = '20170126'
29
+
30
+ # View and manage your data in Google BigQuery
31
+ AUTH_BIGQUERY = 'https://www.googleapis.com/auth/bigquery'
32
+
33
+ # Manage your data in Google Cloud Storage
34
+ AUTH_DEVSTORAGE_READ_WRITE = 'https://www.googleapis.com/auth/devstorage.read_write'
35
+
36
+ # View and manage your data across Google Cloud Platform services
37
+ AUTH_CLOUD_PLATFORM = 'https://www.googleapis.com/auth/cloud-platform'
38
+
39
+ # View Genomics data
40
+ AUTH_GENOMICS_READONLY = 'https://www.googleapis.com/auth/genomics.readonly'
41
+
42
+ # View and manage Genomics data
43
+ AUTH_GENOMICS = 'https://www.googleapis.com/auth/genomics'
44
+ end
45
+ end
46
+ end
@@ -0,0 +1,3477 @@
1
+ # Copyright 2015 Google Inc.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
5
+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+
15
+ require 'date'
16
+ require 'google/apis/core/base_service'
17
+ require 'google/apis/core/json_representation'
18
+ require 'google/apis/core/hashable'
19
+ require 'google/apis/errors'
20
+
21
+ module Google
22
+ module Apis
23
+ module GenomicsV1
24
+
25
+ # A bucket over which read coverage has been precomputed. A bucket corresponds
26
+ # to a specific range of the reference sequence.
27
+ class CoverageBucket
28
+ include Google::Apis::Core::Hashable
29
+
30
+ # The average number of reads which are aligned to each individual
31
+ # reference base in this bucket.
32
+ # Corresponds to the JSON property `meanCoverage`
33
+ # @return [Float]
34
+ attr_accessor :mean_coverage
35
+
36
+ # A 0-based half-open genomic coordinate range for search requests.
37
+ # Corresponds to the JSON property `range`
38
+ # @return [Google::Apis::GenomicsV1::Range]
39
+ attr_accessor :range
40
+
41
+ def initialize(**args)
42
+ update!(**args)
43
+ end
44
+
45
+ # Update properties of this object
46
+ def update!(**args)
47
+ @mean_coverage = args[:mean_coverage] if args.key?(:mean_coverage)
48
+ @range = args[:range] if args.key?(:range)
49
+ end
50
+ end
51
+
52
+ # Describes a Compute Engine resource that is being managed by a running
53
+ # pipeline.
54
+ class ComputeEngine
55
+ include Google::Apis::Core::Hashable
56
+
57
+ # The instance on which the operation is running.
58
+ # Corresponds to the JSON property `instanceName`
59
+ # @return [String]
60
+ attr_accessor :instance_name
61
+
62
+ # The availability zone in which the instance resides.
63
+ # Corresponds to the JSON property `zone`
64
+ # @return [String]
65
+ attr_accessor :zone
66
+
67
+ # The machine type of the instance.
68
+ # Corresponds to the JSON property `machineType`
69
+ # @return [String]
70
+ attr_accessor :machine_type
71
+
72
+ # The names of the disks that were created for this pipeline.
73
+ # Corresponds to the JSON property `diskNames`
74
+ # @return [Array<String>]
75
+ attr_accessor :disk_names
76
+
77
+ def initialize(**args)
78
+ update!(**args)
79
+ end
80
+
81
+ # Update properties of this object
82
+ def update!(**args)
83
+ @instance_name = args[:instance_name] if args.key?(:instance_name)
84
+ @zone = args[:zone] if args.key?(:zone)
85
+ @machine_type = args[:machine_type] if args.key?(:machine_type)
86
+ @disk_names = args[:disk_names] if args.key?(:disk_names)
87
+ end
88
+ end
89
+
90
+ #
91
+ class ExternalId
92
+ include Google::Apis::Core::Hashable
93
+
94
+ # The name of the source of this data.
95
+ # Corresponds to the JSON property `sourceName`
96
+ # @return [String]
97
+ attr_accessor :source_name
98
+
99
+ # The id used by the source of this data.
100
+ # Corresponds to the JSON property `id`
101
+ # @return [String]
102
+ attr_accessor :id
103
+
104
+ def initialize(**args)
105
+ update!(**args)
106
+ end
107
+
108
+ # Update properties of this object
109
+ def update!(**args)
110
+ @source_name = args[:source_name] if args.key?(:source_name)
111
+ @id = args[:id] if args.key?(:id)
112
+ end
113
+ end
114
+
115
+ # A reference is a canonical assembled DNA sequence, intended to act as a
116
+ # reference coordinate space for other genomic annotations. A single reference
117
+ # might represent the human chromosome 1 or mitochandrial DNA, for instance. A
118
+ # reference belongs to one or more reference sets.
119
+ # For more genomics resource definitions, see [Fundamentals of Google
120
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
121
+ class Reference
122
+ include Google::Apis::Core::Hashable
123
+
124
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy. For example, 9606 for human.
125
+ # Corresponds to the JSON property `ncbiTaxonId`
126
+ # @return [Fixnum]
127
+ attr_accessor :ncbi_taxon_id
128
+
129
+ # The URI from which the sequence was obtained. Typically specifies a FASTA
130
+ # format file.
131
+ # Corresponds to the JSON property `sourceUri`
132
+ # @return [String]
133
+ attr_accessor :source_uri
134
+
135
+ # The name of this reference, for example `22`.
136
+ # Corresponds to the JSON property `name`
137
+ # @return [String]
138
+ attr_accessor :name
139
+
140
+ # MD5 of the upper-case sequence excluding all whitespace characters (this
141
+ # is equivalent to SQ:M5 in SAM). This value is represented in lower case
142
+ # hexadecimal format.
143
+ # Corresponds to the JSON property `md5checksum`
144
+ # @return [String]
145
+ attr_accessor :md5checksum
146
+
147
+ # The server-generated reference ID, unique across all references.
148
+ # Corresponds to the JSON property `id`
149
+ # @return [String]
150
+ attr_accessor :id
151
+
152
+ # The length of this reference's sequence.
153
+ # Corresponds to the JSON property `length`
154
+ # @return [String]
155
+ attr_accessor :length
156
+
157
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
158
+ # with a version number, for example `GCF_000001405.26`.
159
+ # Corresponds to the JSON property `sourceAccessions`
160
+ # @return [Array<String>]
161
+ attr_accessor :source_accessions
162
+
163
+ def initialize(**args)
164
+ update!(**args)
165
+ end
166
+
167
+ # Update properties of this object
168
+ def update!(**args)
169
+ @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
170
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
171
+ @name = args[:name] if args.key?(:name)
172
+ @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
173
+ @id = args[:id] if args.key?(:id)
174
+ @length = args[:length] if args.key?(:length)
175
+ @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
176
+ end
177
+ end
178
+
179
+ # Metadata describes a single piece of variant call metadata.
180
+ # These data include a top level key and either a single value string (value)
181
+ # or a list of key-value pairs (info.)
182
+ # Value and info are mutually exclusive.
183
+ class VariantSetMetadata
184
+ include Google::Apis::Core::Hashable
185
+
186
+ # The number of values that can be included in a field described by this
187
+ # metadata.
188
+ # Corresponds to the JSON property `number`
189
+ # @return [String]
190
+ attr_accessor :number
191
+
192
+ # User-provided ID field, not enforced by this API.
193
+ # Two or more pieces of structured metadata with identical
194
+ # id and key fields are considered equivalent.
195
+ # Corresponds to the JSON property `id`
196
+ # @return [String]
197
+ attr_accessor :id
198
+
199
+ # The value field for simple metadata
200
+ # Corresponds to the JSON property `value`
201
+ # @return [String]
202
+ attr_accessor :value
203
+
204
+ # The top-level key.
205
+ # Corresponds to the JSON property `key`
206
+ # @return [String]
207
+ attr_accessor :key
208
+
209
+ # A textual description of this metadata.
210
+ # Corresponds to the JSON property `description`
211
+ # @return [String]
212
+ attr_accessor :description
213
+
214
+ # Remaining structured metadata key-value pairs. This must be of the form
215
+ # map<string, string[]> (string key mapping to a list of string values).
216
+ # Corresponds to the JSON property `info`
217
+ # @return [Hash<String,Array<Object>>]
218
+ attr_accessor :info
219
+
220
+ # The type of data. Possible types include: Integer, Float,
221
+ # Flag, Character, and String.
222
+ # Corresponds to the JSON property `type`
223
+ # @return [String]
224
+ attr_accessor :type
225
+
226
+ def initialize(**args)
227
+ update!(**args)
228
+ end
229
+
230
+ # Update properties of this object
231
+ def update!(**args)
232
+ @number = args[:number] if args.key?(:number)
233
+ @id = args[:id] if args.key?(:id)
234
+ @value = args[:value] if args.key?(:value)
235
+ @key = args[:key] if args.key?(:key)
236
+ @description = args[:description] if args.key?(:description)
237
+ @info = args[:info] if args.key?(:info)
238
+ @type = args[:type] if args.key?(:type)
239
+ end
240
+ end
241
+
242
+ # The search variant sets request.
243
+ class SearchVariantSetsRequest
244
+ include Google::Apis::Core::Hashable
245
+
246
+ # Exactly one dataset ID must be provided here. Only variant sets which
247
+ # belong to this dataset will be returned.
248
+ # Corresponds to the JSON property `datasetIds`
249
+ # @return [Array<String>]
250
+ attr_accessor :dataset_ids
251
+
252
+ # The continuation token, which is used to page through large result sets.
253
+ # To get the next page of results, set this parameter to the value of
254
+ # `nextPageToken` from the previous response.
255
+ # Corresponds to the JSON property `pageToken`
256
+ # @return [String]
257
+ attr_accessor :page_token
258
+
259
+ # The maximum number of results to return in a single page. If unspecified,
260
+ # defaults to 1024.
261
+ # Corresponds to the JSON property `pageSize`
262
+ # @return [Fixnum]
263
+ attr_accessor :page_size
264
+
265
+ def initialize(**args)
266
+ update!(**args)
267
+ end
268
+
269
+ # Update properties of this object
270
+ def update!(**args)
271
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
272
+ @page_token = args[:page_token] if args.key?(:page_token)
273
+ @page_size = args[:page_size] if args.key?(:page_size)
274
+ end
275
+ end
276
+
277
+ #
278
+ class SearchReferenceSetsRequest
279
+ include Google::Apis::Core::Hashable
280
+
281
+ # If present, return reference sets for which a substring of their
282
+ # `assemblyId` matches this string (case insensitive).
283
+ # Corresponds to the JSON property `assemblyId`
284
+ # @return [String]
285
+ attr_accessor :assembly_id
286
+
287
+ # If present, return reference sets for which the
288
+ # md5checksum matches exactly.
289
+ # Corresponds to the JSON property `md5checksums`
290
+ # @return [Array<String>]
291
+ attr_accessor :md5checksums
292
+
293
+ # If present, return reference sets for which a prefix of any of
294
+ # sourceAccessions
295
+ # match any of these strings. Accession numbers typically have a main number
296
+ # and a version, for example `NC_000001.11`.
297
+ # Corresponds to the JSON property `accessions`
298
+ # @return [Array<String>]
299
+ attr_accessor :accessions
300
+
301
+ # The continuation token, which is used to page through large result sets.
302
+ # To get the next page of results, set this parameter to the value of
303
+ # `nextPageToken` from the previous response.
304
+ # Corresponds to the JSON property `pageToken`
305
+ # @return [String]
306
+ attr_accessor :page_token
307
+
308
+ # The maximum number of results to return in a single page. If unspecified,
309
+ # defaults to 1024. The maximum value is 4096.
310
+ # Corresponds to the JSON property `pageSize`
311
+ # @return [Fixnum]
312
+ attr_accessor :page_size
313
+
314
+ def initialize(**args)
315
+ update!(**args)
316
+ end
317
+
318
+ # Update properties of this object
319
+ def update!(**args)
320
+ @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
321
+ @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
322
+ @accessions = args[:accessions] if args.key?(:accessions)
323
+ @page_token = args[:page_token] if args.key?(:page_token)
324
+ @page_size = args[:page_size] if args.key?(:page_size)
325
+ end
326
+ end
327
+
328
+ # Request message for `SetIamPolicy` method.
329
+ class SetIamPolicyRequest
330
+ include Google::Apis::Core::Hashable
331
+
332
+ # Defines an Identity and Access Management (IAM) policy. It is used to
333
+ # specify access control policies for Cloud Platform resources.
334
+ # A `Policy` consists of a list of `bindings`. A `Binding` binds a list of
335
+ # `members` to a `role`, where the members can be user accounts, Google groups,
336
+ # Google domains, and service accounts. A `role` is a named list of permissions
337
+ # defined by IAM.
338
+ # **Example**
339
+ # `
340
+ # "bindings": [
341
+ # `
342
+ # "role": "roles/owner",
343
+ # "members": [
344
+ # "user:mike@example.com",
345
+ # "group:admins@example.com",
346
+ # "domain:google.com",
347
+ # "serviceAccount:my-other-app@appspot.gserviceaccount.com",
348
+ # ]
349
+ # `,
350
+ # `
351
+ # "role": "roles/viewer",
352
+ # "members": ["user:sean@example.com"]
353
+ # `
354
+ # ]
355
+ # `
356
+ # For a description of IAM and its features, see the
357
+ # [IAM developer's guide](https://cloud.google.com/iam).
358
+ # Corresponds to the JSON property `policy`
359
+ # @return [Google::Apis::GenomicsV1::Policy]
360
+ attr_accessor :policy
361
+
362
+ def initialize(**args)
363
+ update!(**args)
364
+ end
365
+
366
+ # Update properties of this object
367
+ def update!(**args)
368
+ @policy = args[:policy] if args.key?(:policy)
369
+ end
370
+ end
371
+
372
+ #
373
+ class MergeVariantsRequest
374
+ include Google::Apis::Core::Hashable
375
+
376
+ # A mapping between info field keys and the InfoMergeOperations to
377
+ # be performed on them.
378
+ # Corresponds to the JSON property `infoMergeConfig`
379
+ # @return [Hash<String,String>]
380
+ attr_accessor :info_merge_config
381
+
382
+ # The destination variant set.
383
+ # Corresponds to the JSON property `variantSetId`
384
+ # @return [String]
385
+ attr_accessor :variant_set_id
386
+
387
+ # The variants to be merged with existing variants.
388
+ # Corresponds to the JSON property `variants`
389
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
390
+ attr_accessor :variants
391
+
392
+ def initialize(**args)
393
+ update!(**args)
394
+ end
395
+
396
+ # Update properties of this object
397
+ def update!(**args)
398
+ @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
399
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
400
+ @variants = args[:variants] if args.key?(:variants)
401
+ end
402
+ end
403
+
404
+ #
405
+ class BatchCreateAnnotationsRequest
406
+ include Google::Apis::Core::Hashable
407
+
408
+ # The annotations to be created. At most 4096 can be specified in a single
409
+ # request.
410
+ # Corresponds to the JSON property `annotations`
411
+ # @return [Array<Google::Apis::GenomicsV1::Annotation>]
412
+ attr_accessor :annotations
413
+
414
+ # A unique request ID which enables the server to detect duplicated requests.
415
+ # If provided, duplicated requests will result in the same response; if not
416
+ # provided, duplicated requests may result in duplicated data. For a given
417
+ # annotation set, callers should not reuse `request_id`s when writing
418
+ # different batches of annotations - behavior in this case is undefined.
419
+ # A common approach is to use a UUID. For batch jobs where worker crashes are
420
+ # a possibility, consider using some unique variant of a worker or run ID.
421
+ # Corresponds to the JSON property `requestId`
422
+ # @return [String]
423
+ attr_accessor :request_id
424
+
425
+ def initialize(**args)
426
+ update!(**args)
427
+ end
428
+
429
+ # Update properties of this object
430
+ def update!(**args)
431
+ @annotations = args[:annotations] if args.key?(:annotations)
432
+ @request_id = args[:request_id] if args.key?(:request_id)
433
+ end
434
+ end
435
+
436
+ # A read alignment describes a linear alignment of a string of DNA to a
437
+ # reference sequence, in addition to metadata
438
+ # about the fragment (the molecule of DNA sequenced) and the read (the bases
439
+ # which were read by the sequencer). A read is equivalent to a line in a SAM
440
+ # file. A read belongs to exactly one read group and exactly one
441
+ # read group set.
442
+ # For more genomics resource definitions, see [Fundamentals of Google
443
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
444
+ # ### Reverse-stranded reads
445
+ # Mapped reads (reads having a non-null `alignment`) can be aligned to either
446
+ # the forward or the reverse strand of their associated reference. Strandedness
447
+ # of a mapped read is encoded by `alignment.position.reverseStrand`.
448
+ # If we consider the reference to be a forward-stranded coordinate space of
449
+ # `[0, reference.length)` with `0` as the left-most position and
450
+ # `reference.length` as the right-most position, reads are always aligned left
451
+ # to right. That is, `alignment.position.position` always refers to the
452
+ # left-most reference coordinate and `alignment.cigar` describes the alignment
453
+ # of this read to the reference from left to right. All per-base fields such as
454
+ # `alignedSequence` and `alignedQuality` share this same left-to-right
455
+ # orientation; this is true of reads which are aligned to either strand. For
456
+ # reverse-stranded reads, this means that `alignedSequence` is the reverse
457
+ # complement of the bases that were originally reported by the sequencing
458
+ # machine.
459
+ # ### Generating a reference-aligned sequence string
460
+ # When interacting with mapped reads, it's often useful to produce a string
461
+ # representing the local alignment of the read to reference. The following
462
+ # pseudocode demonstrates one way of doing this:
463
+ # out = ""
464
+ # offset = 0
465
+ # for c in read.alignment.cigar `
466
+ # switch c.operation `
467
+ # case "ALIGNMENT_MATCH", "SEQUENCE_MATCH", "SEQUENCE_MISMATCH":
468
+ # out += read.alignedSequence[offset:offset+c.operationLength]
469
+ # offset += c.operationLength
470
+ # break
471
+ # case "CLIP_SOFT", "INSERT":
472
+ # offset += c.operationLength
473
+ # break
474
+ # case "PAD":
475
+ # out += repeat("*", c.operationLength)
476
+ # break
477
+ # case "DELETE":
478
+ # out += repeat("-", c.operationLength)
479
+ # break
480
+ # case "SKIP":
481
+ # out += repeat(" ", c.operationLength)
482
+ # break
483
+ # case "CLIP_HARD":
484
+ # break
485
+ # `
486
+ # `
487
+ # return out
488
+ # ### Converting to SAM's CIGAR string
489
+ # The following pseudocode generates a SAM CIGAR string from the
490
+ # `cigar` field. Note that this is a lossy conversion
491
+ # (`cigar.referenceSequence` is lost).
492
+ # cigarMap = `
493
+ # "ALIGNMENT_MATCH": "M",
494
+ # "INSERT": "I",
495
+ # "DELETE": "D",
496
+ # "SKIP": "N",
497
+ # "CLIP_SOFT": "S",
498
+ # "CLIP_HARD": "H",
499
+ # "PAD": "P",
500
+ # "SEQUENCE_MATCH": "=",
501
+ # "SEQUENCE_MISMATCH": "X",
502
+ # `
503
+ # cigarStr = ""
504
+ # for c in read.alignment.cigar `
505
+ # cigarStr += c.operationLength + cigarMap[c.operation]
506
+ # `
507
+ # return cigarStr
508
+ class Read
509
+ include Google::Apis::Core::Hashable
510
+
511
+ # The fragment is a PCR or optical duplicate (SAM flag 0x400).
512
+ # Corresponds to the JSON property `duplicateFragment`
513
+ # @return [Boolean]
514
+ attr_accessor :duplicate_fragment
515
+ alias_method :duplicate_fragment?, :duplicate_fragment
516
+
517
+ # The read number in sequencing. 0-based and less than numberReads. This
518
+ # field replaces SAM flag 0x40 and 0x80.
519
+ # Corresponds to the JSON property `readNumber`
520
+ # @return [Fixnum]
521
+ attr_accessor :read_number
522
+
523
+ # The ID of the read group this read belongs to. A read belongs to exactly
524
+ # one read group. This is a server-generated ID which is distinct from SAM's
525
+ # RG tag (for that value, see
526
+ # ReadGroup.name).
527
+ # Corresponds to the JSON property `readGroupId`
528
+ # @return [String]
529
+ attr_accessor :read_group_id
530
+
531
+ # The bases of the read sequence contained in this alignment record,
532
+ # **without CIGAR operations applied** (equivalent to SEQ in SAM).
533
+ # `alignedSequence` and `alignedQuality` may be
534
+ # shorter than the full read sequence and quality. This will occur if the
535
+ # alignment is part of a chimeric alignment, or if the read was trimmed. When
536
+ # this occurs, the CIGAR for this read will begin/end with a hard clip
537
+ # operator that will indicate the length of the excised sequence.
538
+ # Corresponds to the JSON property `alignedSequence`
539
+ # @return [String]
540
+ attr_accessor :aligned_sequence
541
+
542
+ # A map of additional read alignment information. This must be of the form
543
+ # map<string, string[]> (string key mapping to a list of string values).
544
+ # Corresponds to the JSON property `info`
545
+ # @return [Hash<String,Array<Object>>]
546
+ attr_accessor :info
547
+
548
+ # An abstraction for referring to a genomic position, in relation to some
549
+ # already known reference. For now, represents a genomic position as a
550
+ # reference name, a base number on that reference (0-based), and a
551
+ # determination of forward or reverse strand.
552
+ # Corresponds to the JSON property `nextMatePosition`
553
+ # @return [Google::Apis::GenomicsV1::Position]
554
+ attr_accessor :next_mate_position
555
+
556
+ # Whether this alignment is supplementary. Equivalent to SAM flag 0x800.
557
+ # Supplementary alignments are used in the representation of a chimeric
558
+ # alignment. In a chimeric alignment, a read is split into multiple
559
+ # linear alignments that map to different reference contigs. The first
560
+ # linear alignment in the read will be designated as the representative
561
+ # alignment; the remaining linear alignments will be designated as
562
+ # supplementary alignments. These alignments may have different mapping
563
+ # quality scores. In each linear alignment in a chimeric alignment, the read
564
+ # will be hard clipped. The `alignedSequence` and
565
+ # `alignedQuality` fields in the alignment record will only
566
+ # represent the bases for its respective linear alignment.
567
+ # Corresponds to the JSON property `supplementaryAlignment`
568
+ # @return [Boolean]
569
+ attr_accessor :supplementary_alignment
570
+ alias_method :supplementary_alignment?, :supplementary_alignment
571
+
572
+ # The orientation and the distance between reads from the fragment are
573
+ # consistent with the sequencing protocol (SAM flag 0x2).
574
+ # Corresponds to the JSON property `properPlacement`
575
+ # @return [Boolean]
576
+ attr_accessor :proper_placement
577
+ alias_method :proper_placement?, :proper_placement
578
+
579
+ # The observed length of the fragment, equivalent to TLEN in SAM.
580
+ # Corresponds to the JSON property `fragmentLength`
581
+ # @return [Fixnum]
582
+ attr_accessor :fragment_length
583
+
584
+ # Whether this read did not pass filters, such as platform or vendor quality
585
+ # controls (SAM flag 0x200).
586
+ # Corresponds to the JSON property `failedVendorQualityChecks`
587
+ # @return [Boolean]
588
+ attr_accessor :failed_vendor_quality_checks
589
+ alias_method :failed_vendor_quality_checks?, :failed_vendor_quality_checks
590
+
591
+ # The quality of the read sequence contained in this alignment record
592
+ # (equivalent to QUAL in SAM).
593
+ # `alignedSequence` and `alignedQuality` may be shorter than the full read
594
+ # sequence and quality. This will occur if the alignment is part of a
595
+ # chimeric alignment, or if the read was trimmed. When this occurs, the CIGAR
596
+ # for this read will begin/end with a hard clip operator that will indicate
597
+ # the length of the excised sequence.
598
+ # Corresponds to the JSON property `alignedQuality`
599
+ # @return [Array<Fixnum>]
600
+ attr_accessor :aligned_quality
601
+
602
+ # A linear alignment can be represented by one CIGAR string. Describes the
603
+ # mapped position and local alignment of the read to the reference.
604
+ # Corresponds to the JSON property `alignment`
605
+ # @return [Google::Apis::GenomicsV1::LinearAlignment]
606
+ attr_accessor :alignment
607
+
608
+ # The number of reads in the fragment (extension to SAM flag 0x1).
609
+ # Corresponds to the JSON property `numberReads`
610
+ # @return [Fixnum]
611
+ attr_accessor :number_reads
612
+
613
+ # The server-generated read ID, unique across all reads. This is different
614
+ # from the `fragmentName`.
615
+ # Corresponds to the JSON property `id`
616
+ # @return [String]
617
+ attr_accessor :id
618
+
619
+ # Whether this alignment is secondary. Equivalent to SAM flag 0x100.
620
+ # A secondary alignment represents an alternative to the primary alignment
621
+ # for this read. Aligners may return secondary alignments if a read can map
622
+ # ambiguously to multiple coordinates in the genome. By convention, each read
623
+ # has one and only one alignment where both `secondaryAlignment`
624
+ # and `supplementaryAlignment` are false.
625
+ # Corresponds to the JSON property `secondaryAlignment`
626
+ # @return [Boolean]
627
+ attr_accessor :secondary_alignment
628
+ alias_method :secondary_alignment?, :secondary_alignment
629
+
630
+ # The fragment name. Equivalent to QNAME (query template name) in SAM.
631
+ # Corresponds to the JSON property `fragmentName`
632
+ # @return [String]
633
+ attr_accessor :fragment_name
634
+
635
+ # The ID of the read group set this read belongs to. A read belongs to
636
+ # exactly one read group set.
637
+ # Corresponds to the JSON property `readGroupSetId`
638
+ # @return [String]
639
+ attr_accessor :read_group_set_id
640
+
641
+ def initialize(**args)
642
+ update!(**args)
643
+ end
644
+
645
+ # Update properties of this object
646
+ def update!(**args)
647
+ @duplicate_fragment = args[:duplicate_fragment] if args.key?(:duplicate_fragment)
648
+ @read_number = args[:read_number] if args.key?(:read_number)
649
+ @read_group_id = args[:read_group_id] if args.key?(:read_group_id)
650
+ @aligned_sequence = args[:aligned_sequence] if args.key?(:aligned_sequence)
651
+ @info = args[:info] if args.key?(:info)
652
+ @next_mate_position = args[:next_mate_position] if args.key?(:next_mate_position)
653
+ @supplementary_alignment = args[:supplementary_alignment] if args.key?(:supplementary_alignment)
654
+ @proper_placement = args[:proper_placement] if args.key?(:proper_placement)
655
+ @fragment_length = args[:fragment_length] if args.key?(:fragment_length)
656
+ @failed_vendor_quality_checks = args[:failed_vendor_quality_checks] if args.key?(:failed_vendor_quality_checks)
657
+ @aligned_quality = args[:aligned_quality] if args.key?(:aligned_quality)
658
+ @alignment = args[:alignment] if args.key?(:alignment)
659
+ @number_reads = args[:number_reads] if args.key?(:number_reads)
660
+ @id = args[:id] if args.key?(:id)
661
+ @secondary_alignment = args[:secondary_alignment] if args.key?(:secondary_alignment)
662
+ @fragment_name = args[:fragment_name] if args.key?(:fragment_name)
663
+ @read_group_set_id = args[:read_group_set_id] if args.key?(:read_group_set_id)
664
+ end
665
+ end
666
+
667
+ # A reference set is a set of references which typically comprise a reference
668
+ # assembly for a species, such as `GRCh38` which is representative
669
+ # of the human genome. A reference set defines a common coordinate space for
670
+ # comparing reference-aligned experimental data. A reference set contains 1 or
671
+ # more references.
672
+ # For more genomics resource definitions, see [Fundamentals of Google
673
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
674
+ class ReferenceSet
675
+ include Google::Apis::Core::Hashable
676
+
677
+ # All known corresponding accession IDs in INSDC (GenBank/ENA/DDBJ) ideally
678
+ # with a version number, for example `NC_000001.11`.
679
+ # Corresponds to the JSON property `sourceAccessions`
680
+ # @return [Array<String>]
681
+ attr_accessor :source_accessions
682
+
683
+ # Free text description of this reference set.
684
+ # Corresponds to the JSON property `description`
685
+ # @return [String]
686
+ attr_accessor :description
687
+
688
+ # The URI from which the references were obtained.
689
+ # Corresponds to the JSON property `sourceUri`
690
+ # @return [String]
691
+ attr_accessor :source_uri
692
+
693
+ # ID from http://www.ncbi.nlm.nih.gov/taxonomy (for example, 9606 for human)
694
+ # indicating the species which this reference set is intended to model. Note
695
+ # that contained references may specify a different `ncbiTaxonId`, as
696
+ # assemblies may contain reference sequences which do not belong to the
697
+ # modeled species, for example EBV in a human reference genome.
698
+ # Corresponds to the JSON property `ncbiTaxonId`
699
+ # @return [Fixnum]
700
+ attr_accessor :ncbi_taxon_id
701
+
702
+ # The IDs of the reference objects that are part of this set.
703
+ # `Reference.md5checksum` must be unique within this set.
704
+ # Corresponds to the JSON property `referenceIds`
705
+ # @return [Array<String>]
706
+ attr_accessor :reference_ids
707
+
708
+ # Public id of this reference set, such as `GRCh37`.
709
+ # Corresponds to the JSON property `assemblyId`
710
+ # @return [String]
711
+ attr_accessor :assembly_id
712
+
713
+ # Order-independent MD5 checksum which identifies this reference set. The
714
+ # checksum is computed by sorting all lower case hexidecimal string
715
+ # `reference.md5checksum` (for all reference in this set) in
716
+ # ascending lexicographic order, concatenating, and taking the MD5 of that
717
+ # value. The resulting value is represented in lower case hexadecimal format.
718
+ # Corresponds to the JSON property `md5checksum`
719
+ # @return [String]
720
+ attr_accessor :md5checksum
721
+
722
+ # The server-generated reference set ID, unique across all reference sets.
723
+ # Corresponds to the JSON property `id`
724
+ # @return [String]
725
+ attr_accessor :id
726
+
727
+ def initialize(**args)
728
+ update!(**args)
729
+ end
730
+
731
+ # Update properties of this object
732
+ def update!(**args)
733
+ @source_accessions = args[:source_accessions] if args.key?(:source_accessions)
734
+ @description = args[:description] if args.key?(:description)
735
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
736
+ @ncbi_taxon_id = args[:ncbi_taxon_id] if args.key?(:ncbi_taxon_id)
737
+ @reference_ids = args[:reference_ids] if args.key?(:reference_ids)
738
+ @assembly_id = args[:assembly_id] if args.key?(:assembly_id)
739
+ @md5checksum = args[:md5checksum] if args.key?(:md5checksum)
740
+ @id = args[:id] if args.key?(:id)
741
+ end
742
+ end
743
+
744
+ # A single CIGAR operation.
745
+ class CigarUnit
746
+ include Google::Apis::Core::Hashable
747
+
748
+ # `referenceSequence` is only used at mismatches
749
+ # (`SEQUENCE_MISMATCH`) and deletions (`DELETE`).
750
+ # Filling this field replaces SAM's MD tag. If the relevant information is
751
+ # not available, this field is unset.
752
+ # Corresponds to the JSON property `referenceSequence`
753
+ # @return [String]
754
+ attr_accessor :reference_sequence
755
+
756
+ # The number of genomic bases that the operation runs for. Required.
757
+ # Corresponds to the JSON property `operationLength`
758
+ # @return [String]
759
+ attr_accessor :operation_length
760
+
761
+ #
762
+ # Corresponds to the JSON property `operation`
763
+ # @return [String]
764
+ attr_accessor :operation
765
+
766
+ def initialize(**args)
767
+ update!(**args)
768
+ end
769
+
770
+ # Update properties of this object
771
+ def update!(**args)
772
+ @reference_sequence = args[:reference_sequence] if args.key?(:reference_sequence)
773
+ @operation_length = args[:operation_length] if args.key?(:operation_length)
774
+ @operation = args[:operation] if args.key?(:operation)
775
+ end
776
+ end
777
+
778
+ # An annotation set is a logical grouping of annotations that share consistent
779
+ # type information and provenance. Examples of annotation sets include 'all
780
+ # genes from refseq', and 'all variant annotations from ClinVar'.
781
+ class AnnotationSet
782
+ include Google::Apis::Core::Hashable
783
+
784
+ # The dataset to which this annotation set belongs.
785
+ # Corresponds to the JSON property `datasetId`
786
+ # @return [String]
787
+ attr_accessor :dataset_id
788
+
789
+ # The source URI describing the file from which this annotation set was
790
+ # generated, if any.
791
+ # Corresponds to the JSON property `sourceUri`
792
+ # @return [String]
793
+ attr_accessor :source_uri
794
+
795
+ # The display name for this annotation set.
796
+ # Corresponds to the JSON property `name`
797
+ # @return [String]
798
+ attr_accessor :name
799
+
800
+ # The ID of the reference set that defines the coordinate space for this
801
+ # set's annotations.
802
+ # Corresponds to the JSON property `referenceSetId`
803
+ # @return [String]
804
+ attr_accessor :reference_set_id
805
+
806
+ # A map of additional read alignment information. This must be of the form
807
+ # map<string, string[]> (string key mapping to a list of string values).
808
+ # Corresponds to the JSON property `info`
809
+ # @return [Hash<String,Array<Object>>]
810
+ attr_accessor :info
811
+
812
+ # The type of annotations contained within this set.
813
+ # Corresponds to the JSON property `type`
814
+ # @return [String]
815
+ attr_accessor :type
816
+
817
+ # The server-generated annotation set ID, unique across all annotation sets.
818
+ # Corresponds to the JSON property `id`
819
+ # @return [String]
820
+ attr_accessor :id
821
+
822
+ def initialize(**args)
823
+ update!(**args)
824
+ end
825
+
826
+ # Update properties of this object
827
+ def update!(**args)
828
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
829
+ @source_uri = args[:source_uri] if args.key?(:source_uri)
830
+ @name = args[:name] if args.key?(:name)
831
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
832
+ @info = args[:info] if args.key?(:info)
833
+ @type = args[:type] if args.key?(:type)
834
+ @id = args[:id] if args.key?(:id)
835
+ end
836
+ end
837
+
838
+ # A transcript represents the assertion that a particular region of the
839
+ # reference genome may be transcribed as RNA.
840
+ class Transcript
841
+ include Google::Apis::Core::Hashable
842
+
843
+ # The <a href="http://en.wikipedia.org/wiki/Exon">exons</a> that compose
844
+ # this transcript. This field should be unset for genomes where transcript
845
+ # splicing does not occur, for example prokaryotes.
846
+ # Introns are regions of the transcript that are not included in the
847
+ # spliced RNA product. Though not explicitly modeled here, intron ranges can
848
+ # be deduced; all regions of this transcript that are not exons are introns.
849
+ # Exonic sequences do not necessarily code for a translational product
850
+ # (amino acids). Only the regions of exons bounded by the
851
+ # codingSequence correspond
852
+ # to coding DNA sequence.
853
+ # Exons are ordered by start position and may not overlap.
854
+ # Corresponds to the JSON property `exons`
855
+ # @return [Array<Google::Apis::GenomicsV1::Exon>]
856
+ attr_accessor :exons
857
+
858
+ # The range of the coding sequence for this transcript, if any. To determine
859
+ # the exact ranges of coding sequence, intersect this range with those of the
860
+ # exons, if any. If there are any
861
+ # exons, the
862
+ # codingSequence must start
863
+ # and end within them.
864
+ # Note that in some cases, the reference genome will not exactly match the
865
+ # observed mRNA transcript e.g. due to variance in the source genome from
866
+ # reference. In these cases,
867
+ # exon.frame will not necessarily
868
+ # match the expected reference reading frame and coding exon reference bases
869
+ # cannot necessarily be concatenated to produce the original transcript mRNA.
870
+ # Corresponds to the JSON property `codingSequence`
871
+ # @return [Google::Apis::GenomicsV1::CodingSequence]
872
+ attr_accessor :coding_sequence
873
+
874
+ # The annotation ID of the gene from which this transcript is transcribed.
875
+ # Corresponds to the JSON property `geneId`
876
+ # @return [String]
877
+ attr_accessor :gene_id
878
+
879
+ def initialize(**args)
880
+ update!(**args)
881
+ end
882
+
883
+ # Update properties of this object
884
+ def update!(**args)
885
+ @exons = args[:exons] if args.key?(:exons)
886
+ @coding_sequence = args[:coding_sequence] if args.key?(:coding_sequence)
887
+ @gene_id = args[:gene_id] if args.key?(:gene_id)
888
+ end
889
+ end
890
+
891
+ #
892
+ class Experiment
893
+ include Google::Apis::Core::Hashable
894
+
895
+ # The platform unit used as part of this experiment, for example
896
+ # flowcell-barcode.lane for Illumina or slide for SOLiD. Corresponds to the
897
+ # @RG PU field in the SAM spec.
898
+ # Corresponds to the JSON property `platformUnit`
899
+ # @return [String]
900
+ attr_accessor :platform_unit
901
+
902
+ # A client-supplied library identifier; a library is a collection of DNA
903
+ # fragments which have been prepared for sequencing from a sample. This
904
+ # field is important for quality control as error or bias can be introduced
905
+ # during sample preparation.
906
+ # Corresponds to the JSON property `libraryId`
907
+ # @return [String]
908
+ attr_accessor :library_id
909
+
910
+ # The instrument model used as part of this experiment. This maps to
911
+ # sequencing technology in the SAM spec.
912
+ # Corresponds to the JSON property `instrumentModel`
913
+ # @return [String]
914
+ attr_accessor :instrument_model
915
+
916
+ # The sequencing center used as part of this experiment.
917
+ # Corresponds to the JSON property `sequencingCenter`
918
+ # @return [String]
919
+ attr_accessor :sequencing_center
920
+
921
+ def initialize(**args)
922
+ update!(**args)
923
+ end
924
+
925
+ # Update properties of this object
926
+ def update!(**args)
927
+ @platform_unit = args[:platform_unit] if args.key?(:platform_unit)
928
+ @library_id = args[:library_id] if args.key?(:library_id)
929
+ @instrument_model = args[:instrument_model] if args.key?(:instrument_model)
930
+ @sequencing_center = args[:sequencing_center] if args.key?(:sequencing_center)
931
+ end
932
+ end
933
+
934
+ # The dataset list response.
935
+ class ListDatasetsResponse
936
+ include Google::Apis::Core::Hashable
937
+
938
+ # The list of matching Datasets.
939
+ # Corresponds to the JSON property `datasets`
940
+ # @return [Array<Google::Apis::GenomicsV1::Dataset>]
941
+ attr_accessor :datasets
942
+
943
+ # The continuation token, which is used to page through large result sets.
944
+ # Provide this value in a subsequent request to return the next page of
945
+ # results. This field will be empty if there aren't any additional results.
946
+ # Corresponds to the JSON property `nextPageToken`
947
+ # @return [String]
948
+ attr_accessor :next_page_token
949
+
950
+ def initialize(**args)
951
+ update!(**args)
952
+ end
953
+
954
+ # Update properties of this object
955
+ def update!(**args)
956
+ @datasets = args[:datasets] if args.key?(:datasets)
957
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
958
+ end
959
+ end
960
+
961
+ # Request message for `TestIamPermissions` method.
962
+ class TestIamPermissionsRequest
963
+ include Google::Apis::Core::Hashable
964
+
965
+ # REQUIRED: The set of permissions to check for the 'resource'.
966
+ # Permissions with wildcards (such as '*' or 'storage.*') are not allowed.
967
+ # Allowed permissions are&#58;
968
+ # * `genomics.datasets.create`
969
+ # * `genomics.datasets.delete`
970
+ # * `genomics.datasets.get`
971
+ # * `genomics.datasets.list`
972
+ # * `genomics.datasets.update`
973
+ # * `genomics.datasets.getIamPolicy`
974
+ # * `genomics.datasets.setIamPolicy`
975
+ # Corresponds to the JSON property `permissions`
976
+ # @return [Array<String>]
977
+ attr_accessor :permissions
978
+
979
+ def initialize(**args)
980
+ update!(**args)
981
+ end
982
+
983
+ # Update properties of this object
984
+ def update!(**args)
985
+ @permissions = args[:permissions] if args.key?(:permissions)
986
+ end
987
+ end
988
+
989
+ # The read group set export request.
990
+ class ExportReadGroupSetRequest
991
+ include Google::Apis::Core::Hashable
992
+
993
+ # Required. A Google Cloud Storage URI for the exported BAM file.
994
+ # The currently authenticated user must have write access to the new file.
995
+ # An error will be returned if the URI already contains data.
996
+ # Corresponds to the JSON property `exportUri`
997
+ # @return [String]
998
+ attr_accessor :export_uri
999
+
1000
+ # The reference names to export. If this is not specified, all reference
1001
+ # sequences, including unmapped reads, are exported.
1002
+ # Use `*` to export only unmapped reads.
1003
+ # Corresponds to the JSON property `referenceNames`
1004
+ # @return [Array<String>]
1005
+ attr_accessor :reference_names
1006
+
1007
+ # Required. The Google Cloud project ID that owns this
1008
+ # export. The caller must have WRITE access to this project.
1009
+ # Corresponds to the JSON property `projectId`
1010
+ # @return [String]
1011
+ attr_accessor :project_id
1012
+
1013
+ def initialize(**args)
1014
+ update!(**args)
1015
+ end
1016
+
1017
+ # Update properties of this object
1018
+ def update!(**args)
1019
+ @export_uri = args[:export_uri] if args.key?(:export_uri)
1020
+ @reference_names = args[:reference_names] if args.key?(:reference_names)
1021
+ @project_id = args[:project_id] if args.key?(:project_id)
1022
+ end
1023
+ end
1024
+
1025
+ #
1026
+ class Exon
1027
+ include Google::Apis::Core::Hashable
1028
+
1029
+ # The start position of the exon on this annotation's reference sequence,
1030
+ # 0-based inclusive. Note that this is relative to the reference start, and
1031
+ # **not** the containing annotation start.
1032
+ # Corresponds to the JSON property `start`
1033
+ # @return [String]
1034
+ attr_accessor :start
1035
+
1036
+ # The end position of the exon on this annotation's reference sequence,
1037
+ # 0-based exclusive. Note that this is relative to the reference start, and
1038
+ # *not* the containing annotation start.
1039
+ # Corresponds to the JSON property `end`
1040
+ # @return [String]
1041
+ attr_accessor :end
1042
+
1043
+ # The frame of this exon. Contains a value of 0, 1, or 2, which indicates
1044
+ # the offset of the first coding base of the exon within the reading frame
1045
+ # of the coding DNA sequence, if any. This field is dependent on the
1046
+ # strandedness of this annotation (see
1047
+ # Annotation.reverse_strand).
1048
+ # For forward stranded annotations, this offset is relative to the
1049
+ # exon.start. For reverse
1050
+ # strand annotations, this offset is relative to the
1051
+ # exon.end `- 1`.
1052
+ # Unset if this exon does not intersect the coding sequence. Upon creation
1053
+ # of a transcript, the frame must be populated for all or none of the
1054
+ # coding exons.
1055
+ # Corresponds to the JSON property `frame`
1056
+ # @return [Fixnum]
1057
+ attr_accessor :frame
1058
+
1059
+ def initialize(**args)
1060
+ update!(**args)
1061
+ end
1062
+
1063
+ # Update properties of this object
1064
+ def update!(**args)
1065
+ @start = args[:start] if args.key?(:start)
1066
+ @end = args[:end] if args.key?(:end)
1067
+ @frame = args[:frame] if args.key?(:frame)
1068
+ end
1069
+ end
1070
+
1071
+ # A call set is a collection of variant calls, typically for one sample. It
1072
+ # belongs to a variant set.
1073
+ # For more genomics resource definitions, see [Fundamentals of Google
1074
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1075
+ class CallSet
1076
+ include Google::Apis::Core::Hashable
1077
+
1078
+ # The date this call set was created in milliseconds from the epoch.
1079
+ # Corresponds to the JSON property `created`
1080
+ # @return [String]
1081
+ attr_accessor :created
1082
+
1083
+ # The sample ID this call set corresponds to.
1084
+ # Corresponds to the JSON property `sampleId`
1085
+ # @return [String]
1086
+ attr_accessor :sample_id
1087
+
1088
+ # The call set name.
1089
+ # Corresponds to the JSON property `name`
1090
+ # @return [String]
1091
+ attr_accessor :name
1092
+
1093
+ # A map of additional call set information. This must be of the form
1094
+ # map<string, string[]> (string key mapping to a list of string values).
1095
+ # Corresponds to the JSON property `info`
1096
+ # @return [Hash<String,Array<Object>>]
1097
+ attr_accessor :info
1098
+
1099
+ # The IDs of the variant sets this call set belongs to. This field must
1100
+ # have exactly length one, as a call set belongs to a single variant set.
1101
+ # This field is repeated for compatibility with the
1102
+ # [GA4GH 0.5.1
1103
+ # API](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/
1104
+ # variants.avdl#L76).
1105
+ # Corresponds to the JSON property `variantSetIds`
1106
+ # @return [Array<String>]
1107
+ attr_accessor :variant_set_ids
1108
+
1109
+ # The server-generated call set ID, unique across all call sets.
1110
+ # Corresponds to the JSON property `id`
1111
+ # @return [String]
1112
+ attr_accessor :id
1113
+
1114
+ def initialize(**args)
1115
+ update!(**args)
1116
+ end
1117
+
1118
+ # Update properties of this object
1119
+ def update!(**args)
1120
+ @created = args[:created] if args.key?(:created)
1121
+ @sample_id = args[:sample_id] if args.key?(:sample_id)
1122
+ @name = args[:name] if args.key?(:name)
1123
+ @info = args[:info] if args.key?(:info)
1124
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
1125
+ @id = args[:id] if args.key?(:id)
1126
+ end
1127
+ end
1128
+
1129
+ #
1130
+ class SearchAnnotationSetsResponse
1131
+ include Google::Apis::Core::Hashable
1132
+
1133
+ # The matching annotation sets.
1134
+ # Corresponds to the JSON property `annotationSets`
1135
+ # @return [Array<Google::Apis::GenomicsV1::AnnotationSet>]
1136
+ attr_accessor :annotation_sets
1137
+
1138
+ # The continuation token, which is used to page through large result sets.
1139
+ # Provide this value in a subsequent request to return the next page of
1140
+ # results. This field will be empty if there aren't any additional results.
1141
+ # Corresponds to the JSON property `nextPageToken`
1142
+ # @return [String]
1143
+ attr_accessor :next_page_token
1144
+
1145
+ def initialize(**args)
1146
+ update!(**args)
1147
+ end
1148
+
1149
+ # Update properties of this object
1150
+ def update!(**args)
1151
+ @annotation_sets = args[:annotation_sets] if args.key?(:annotation_sets)
1152
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1153
+ end
1154
+ end
1155
+
1156
+ # The variant data import request.
1157
+ class ImportVariantsRequest
1158
+ include Google::Apis::Core::Hashable
1159
+
1160
+ # A mapping between info field keys and the InfoMergeOperations to
1161
+ # be performed on them. This is plumbed down to the MergeVariantRequests
1162
+ # generated by the resulting import job.
1163
+ # Corresponds to the JSON property `infoMergeConfig`
1164
+ # @return [Hash<String,String>]
1165
+ attr_accessor :info_merge_config
1166
+
1167
+ # Required. The variant set to which variant data should be imported.
1168
+ # Corresponds to the JSON property `variantSetId`
1169
+ # @return [String]
1170
+ attr_accessor :variant_set_id
1171
+
1172
+ # A list of URIs referencing variant files in Google Cloud Storage. URIs can
1173
+ # include wildcards [as described
1174
+ # here](https://cloud.google.com/storage/docs/gsutil/addlhelp/WildcardNames).
1175
+ # Note that recursive wildcards ('**') are not supported.
1176
+ # Corresponds to the JSON property `sourceUris`
1177
+ # @return [Array<String>]
1178
+ attr_accessor :source_uris
1179
+
1180
+ # Convert reference names to the canonical representation.
1181
+ # hg19 haploytypes (those reference names containing "_hap")
1182
+ # are not modified in any way.
1183
+ # All other reference names are modified according to the following rules:
1184
+ # The reference name is capitalized.
1185
+ # The "chr" prefix is dropped for all autosomes and sex chromsomes.
1186
+ # For example "chr17" becomes "17" and "chrX" becomes "X".
1187
+ # All mitochondrial chromosomes ("chrM", "chrMT", etc) become "MT".
1188
+ # Corresponds to the JSON property `normalizeReferenceNames`
1189
+ # @return [Boolean]
1190
+ attr_accessor :normalize_reference_names
1191
+ alias_method :normalize_reference_names?, :normalize_reference_names
1192
+
1193
+ # The format of the variant data being imported. If unspecified, defaults to
1194
+ # to `VCF`.
1195
+ # Corresponds to the JSON property `format`
1196
+ # @return [String]
1197
+ attr_accessor :format
1198
+
1199
+ def initialize(**args)
1200
+ update!(**args)
1201
+ end
1202
+
1203
+ # Update properties of this object
1204
+ def update!(**args)
1205
+ @info_merge_config = args[:info_merge_config] if args.key?(:info_merge_config)
1206
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
1207
+ @source_uris = args[:source_uris] if args.key?(:source_uris)
1208
+ @normalize_reference_names = args[:normalize_reference_names] if args.key?(:normalize_reference_names)
1209
+ @format = args[:format] if args.key?(:format)
1210
+ end
1211
+ end
1212
+
1213
+ #
1214
+ class VariantAnnotation
1215
+ include Google::Apis::Core::Hashable
1216
+
1217
+ # The set of conditions associated with this variant.
1218
+ # A condition describes the way a variant influences human health.
1219
+ # Corresponds to the JSON property `conditions`
1220
+ # @return [Array<Google::Apis::GenomicsV1::ClinicalCondition>]
1221
+ attr_accessor :conditions
1222
+
1223
+ # Effect of the variant on the coding sequence.
1224
+ # Corresponds to the JSON property `effect`
1225
+ # @return [String]
1226
+ attr_accessor :effect
1227
+
1228
+ # Google annotation IDs of the transcripts affected by this variant. These
1229
+ # should be provided when the variant is created.
1230
+ # Corresponds to the JSON property `transcriptIds`
1231
+ # @return [Array<String>]
1232
+ attr_accessor :transcript_ids
1233
+
1234
+ # Type has been adapted from ClinVar's list of variant types.
1235
+ # Corresponds to the JSON property `type`
1236
+ # @return [String]
1237
+ attr_accessor :type
1238
+
1239
+ # The alternate allele for this variant. If multiple alternate alleles
1240
+ # exist at this location, create a separate variant for each one, as they
1241
+ # may represent distinct conditions.
1242
+ # Corresponds to the JSON property `alternateBases`
1243
+ # @return [String]
1244
+ attr_accessor :alternate_bases
1245
+
1246
+ # Google annotation ID of the gene affected by this variant. This should
1247
+ # be provided when the variant is created.
1248
+ # Corresponds to the JSON property `geneId`
1249
+ # @return [String]
1250
+ attr_accessor :gene_id
1251
+
1252
+ # Describes the clinical significance of a variant.
1253
+ # It is adapted from the ClinVar controlled vocabulary for clinical
1254
+ # significance described at:
1255
+ # http://www.ncbi.nlm.nih.gov/clinvar/docs/clinsig/
1256
+ # Corresponds to the JSON property `clinicalSignificance`
1257
+ # @return [String]
1258
+ attr_accessor :clinical_significance
1259
+
1260
+ def initialize(**args)
1261
+ update!(**args)
1262
+ end
1263
+
1264
+ # Update properties of this object
1265
+ def update!(**args)
1266
+ @conditions = args[:conditions] if args.key?(:conditions)
1267
+ @effect = args[:effect] if args.key?(:effect)
1268
+ @transcript_ids = args[:transcript_ids] if args.key?(:transcript_ids)
1269
+ @type = args[:type] if args.key?(:type)
1270
+ @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
1271
+ @gene_id = args[:gene_id] if args.key?(:gene_id)
1272
+ @clinical_significance = args[:clinical_significance] if args.key?(:clinical_significance)
1273
+ end
1274
+ end
1275
+
1276
+ #
1277
+ class ListCoverageBucketsResponse
1278
+ include Google::Apis::Core::Hashable
1279
+
1280
+ # The length of each coverage bucket in base pairs. Note that buckets at the
1281
+ # end of a reference sequence may be shorter. This value is omitted if the
1282
+ # bucket width is infinity (the default behaviour, with no range or
1283
+ # `targetBucketWidth`).
1284
+ # Corresponds to the JSON property `bucketWidth`
1285
+ # @return [String]
1286
+ attr_accessor :bucket_width
1287
+
1288
+ # The coverage buckets. The list of buckets is sparse; a bucket with 0
1289
+ # overlapping reads is not returned. A bucket never crosses more than one
1290
+ # reference sequence. Each bucket has width `bucketWidth`, unless
1291
+ # its end is the end of the reference sequence.
1292
+ # Corresponds to the JSON property `coverageBuckets`
1293
+ # @return [Array<Google::Apis::GenomicsV1::CoverageBucket>]
1294
+ attr_accessor :coverage_buckets
1295
+
1296
+ # The continuation token, which is used to page through large result sets.
1297
+ # Provide this value in a subsequent request to return the next page of
1298
+ # results. This field will be empty if there aren't any additional results.
1299
+ # Corresponds to the JSON property `nextPageToken`
1300
+ # @return [String]
1301
+ attr_accessor :next_page_token
1302
+
1303
+ def initialize(**args)
1304
+ update!(**args)
1305
+ end
1306
+
1307
+ # Update properties of this object
1308
+ def update!(**args)
1309
+ @bucket_width = args[:bucket_width] if args.key?(:bucket_width)
1310
+ @coverage_buckets = args[:coverage_buckets] if args.key?(:coverage_buckets)
1311
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1312
+ end
1313
+ end
1314
+
1315
+ # The variant data export request.
1316
+ class ExportVariantSetRequest
1317
+ include Google::Apis::Core::Hashable
1318
+
1319
+ # The format for the exported data.
1320
+ # Corresponds to the JSON property `format`
1321
+ # @return [String]
1322
+ attr_accessor :format
1323
+
1324
+ # Required. The BigQuery dataset to export data to. This dataset must already
1325
+ # exist. Note that this is distinct from the Genomics concept of "dataset".
1326
+ # Corresponds to the JSON property `bigqueryDataset`
1327
+ # @return [String]
1328
+ attr_accessor :bigquery_dataset
1329
+
1330
+ # Required. The BigQuery table to export data to.
1331
+ # If the table doesn't exist, it will be created. If it already exists, it
1332
+ # will be overwritten.
1333
+ # Corresponds to the JSON property `bigqueryTable`
1334
+ # @return [String]
1335
+ attr_accessor :bigquery_table
1336
+
1337
+ # If provided, only variant call information from the specified call sets
1338
+ # will be exported. By default all variant calls are exported.
1339
+ # Corresponds to the JSON property `callSetIds`
1340
+ # @return [Array<String>]
1341
+ attr_accessor :call_set_ids
1342
+
1343
+ # Required. The Google Cloud project ID that owns the destination
1344
+ # BigQuery dataset. The caller must have WRITE access to this project. This
1345
+ # project will also own the resulting export job.
1346
+ # Corresponds to the JSON property `projectId`
1347
+ # @return [String]
1348
+ attr_accessor :project_id
1349
+
1350
+ def initialize(**args)
1351
+ update!(**args)
1352
+ end
1353
+
1354
+ # Update properties of this object
1355
+ def update!(**args)
1356
+ @format = args[:format] if args.key?(:format)
1357
+ @bigquery_dataset = args[:bigquery_dataset] if args.key?(:bigquery_dataset)
1358
+ @bigquery_table = args[:bigquery_table] if args.key?(:bigquery_table)
1359
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1360
+ @project_id = args[:project_id] if args.key?(:project_id)
1361
+ end
1362
+ end
1363
+
1364
+ #
1365
+ class SearchAnnotationsRequest
1366
+ include Google::Apis::Core::Hashable
1367
+
1368
+ # The continuation token, which is used to page through large result sets.
1369
+ # To get the next page of results, set this parameter to the value of
1370
+ # `nextPageToken` from the previous response.
1371
+ # Corresponds to the JSON property `pageToken`
1372
+ # @return [String]
1373
+ attr_accessor :page_token
1374
+
1375
+ # The maximum number of results to return in a single page. If unspecified,
1376
+ # defaults to 256. The maximum value is 2048.
1377
+ # Corresponds to the JSON property `pageSize`
1378
+ # @return [Fixnum]
1379
+ attr_accessor :page_size
1380
+
1381
+ # The start position of the range on the reference, 0-based inclusive. If
1382
+ # specified,
1383
+ # referenceId or
1384
+ # referenceName
1385
+ # must be specified. Defaults to 0.
1386
+ # Corresponds to the JSON property `start`
1387
+ # @return [String]
1388
+ attr_accessor :start
1389
+
1390
+ # Required. The annotation sets to search within. The caller must have
1391
+ # `READ` access to these annotation sets.
1392
+ # All queried annotation sets must have the same type.
1393
+ # Corresponds to the JSON property `annotationSetIds`
1394
+ # @return [Array<String>]
1395
+ attr_accessor :annotation_set_ids
1396
+
1397
+ # The name of the reference to query, within the reference set associated
1398
+ # with this query.
1399
+ # Corresponds to the JSON property `referenceName`
1400
+ # @return [String]
1401
+ attr_accessor :reference_name
1402
+
1403
+ # The ID of the reference to query.
1404
+ # Corresponds to the JSON property `referenceId`
1405
+ # @return [String]
1406
+ attr_accessor :reference_id
1407
+
1408
+ # The end position of the range on the reference, 0-based exclusive. If
1409
+ # referenceId or
1410
+ # referenceName
1411
+ # must be specified, Defaults to the length of the reference.
1412
+ # Corresponds to the JSON property `end`
1413
+ # @return [String]
1414
+ attr_accessor :end
1415
+
1416
+ def initialize(**args)
1417
+ update!(**args)
1418
+ end
1419
+
1420
+ # Update properties of this object
1421
+ def update!(**args)
1422
+ @page_token = args[:page_token] if args.key?(:page_token)
1423
+ @page_size = args[:page_size] if args.key?(:page_size)
1424
+ @start = args[:start] if args.key?(:start)
1425
+ @annotation_set_ids = args[:annotation_set_ids] if args.key?(:annotation_set_ids)
1426
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
1427
+ @reference_id = args[:reference_id] if args.key?(:reference_id)
1428
+ @end = args[:end] if args.key?(:end)
1429
+ end
1430
+ end
1431
+
1432
+ # An event that occurred during an Operation.
1433
+ class OperationEvent
1434
+ include Google::Apis::Core::Hashable
1435
+
1436
+ # Optional time of when event finished. An event can have a start time and no
1437
+ # finish time. If an event has a finish time, there must be a start time.
1438
+ # Corresponds to the JSON property `endTime`
1439
+ # @return [String]
1440
+ attr_accessor :end_time
1441
+
1442
+ # Optional time of when event started.
1443
+ # Corresponds to the JSON property `startTime`
1444
+ # @return [String]
1445
+ attr_accessor :start_time
1446
+
1447
+ # Required description of event.
1448
+ # Corresponds to the JSON property `description`
1449
+ # @return [String]
1450
+ attr_accessor :description
1451
+
1452
+ def initialize(**args)
1453
+ update!(**args)
1454
+ end
1455
+
1456
+ # Update properties of this object
1457
+ def update!(**args)
1458
+ @end_time = args[:end_time] if args.key?(:end_time)
1459
+ @start_time = args[:start_time] if args.key?(:start_time)
1460
+ @description = args[:description] if args.key?(:description)
1461
+ end
1462
+ end
1463
+
1464
+ #
1465
+ class CodingSequence
1466
+ include Google::Apis::Core::Hashable
1467
+
1468
+ # The start of the coding sequence on this annotation's reference sequence,
1469
+ # 0-based inclusive. Note that this position is relative to the reference
1470
+ # start, and *not* the containing annotation start.
1471
+ # Corresponds to the JSON property `start`
1472
+ # @return [String]
1473
+ attr_accessor :start
1474
+
1475
+ # The end of the coding sequence on this annotation's reference sequence,
1476
+ # 0-based exclusive. Note that this position is relative to the reference
1477
+ # start, and *not* the containing annotation start.
1478
+ # Corresponds to the JSON property `end`
1479
+ # @return [String]
1480
+ attr_accessor :end
1481
+
1482
+ def initialize(**args)
1483
+ update!(**args)
1484
+ end
1485
+
1486
+ # Update properties of this object
1487
+ def update!(**args)
1488
+ @start = args[:start] if args.key?(:start)
1489
+ @end = args[:end] if args.key?(:end)
1490
+ end
1491
+ end
1492
+
1493
+ #
1494
+ class SearchReferencesResponse
1495
+ include Google::Apis::Core::Hashable
1496
+
1497
+ # The matching references.
1498
+ # Corresponds to the JSON property `references`
1499
+ # @return [Array<Google::Apis::GenomicsV1::Reference>]
1500
+ attr_accessor :references
1501
+
1502
+ # The continuation token, which is used to page through large result sets.
1503
+ # Provide this value in a subsequent request to return the next page of
1504
+ # results. This field will be empty if there aren't any additional results.
1505
+ # Corresponds to the JSON property `nextPageToken`
1506
+ # @return [String]
1507
+ attr_accessor :next_page_token
1508
+
1509
+ def initialize(**args)
1510
+ update!(**args)
1511
+ end
1512
+
1513
+ # Update properties of this object
1514
+ def update!(**args)
1515
+ @references = args[:references] if args.key?(:references)
1516
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1517
+ end
1518
+ end
1519
+
1520
+ # Request message for `GetIamPolicy` method.
1521
+ class GetIamPolicyRequest
1522
+ include Google::Apis::Core::Hashable
1523
+
1524
+ def initialize(**args)
1525
+ update!(**args)
1526
+ end
1527
+
1528
+ # Update properties of this object
1529
+ def update!(**args)
1530
+ end
1531
+ end
1532
+
1533
+ # Response message for `TestIamPermissions` method.
1534
+ class TestIamPermissionsResponse
1535
+ include Google::Apis::Core::Hashable
1536
+
1537
+ # A subset of `TestPermissionsRequest.permissions` that the caller is
1538
+ # allowed.
1539
+ # Corresponds to the JSON property `permissions`
1540
+ # @return [Array<String>]
1541
+ attr_accessor :permissions
1542
+
1543
+ def initialize(**args)
1544
+ update!(**args)
1545
+ end
1546
+
1547
+ # Update properties of this object
1548
+ def update!(**args)
1549
+ @permissions = args[:permissions] if args.key?(:permissions)
1550
+ end
1551
+ end
1552
+
1553
+ #
1554
+ class SearchAnnotationSetsRequest
1555
+ include Google::Apis::Core::Hashable
1556
+
1557
+ # The continuation token, which is used to page through large result sets.
1558
+ # To get the next page of results, set this parameter to the value of
1559
+ # `nextPageToken` from the previous response.
1560
+ # Corresponds to the JSON property `pageToken`
1561
+ # @return [String]
1562
+ attr_accessor :page_token
1563
+
1564
+ # The maximum number of results to return in a single page. If unspecified,
1565
+ # defaults to 128. The maximum value is 1024.
1566
+ # Corresponds to the JSON property `pageSize`
1567
+ # @return [Fixnum]
1568
+ attr_accessor :page_size
1569
+
1570
+ # Required. The dataset IDs to search within. Caller must have `READ` access
1571
+ # to these datasets.
1572
+ # Corresponds to the JSON property `datasetIds`
1573
+ # @return [Array<String>]
1574
+ attr_accessor :dataset_ids
1575
+
1576
+ # If specified, only annotation sets that have any of these types are
1577
+ # returned.
1578
+ # Corresponds to the JSON property `types`
1579
+ # @return [Array<String>]
1580
+ attr_accessor :types
1581
+
1582
+ # Only return annotations sets for which a substring of the name matches this
1583
+ # string (case insensitive).
1584
+ # Corresponds to the JSON property `name`
1585
+ # @return [String]
1586
+ attr_accessor :name
1587
+
1588
+ # If specified, only annotation sets associated with the given reference set
1589
+ # are returned.
1590
+ # Corresponds to the JSON property `referenceSetId`
1591
+ # @return [String]
1592
+ attr_accessor :reference_set_id
1593
+
1594
+ def initialize(**args)
1595
+ update!(**args)
1596
+ end
1597
+
1598
+ # Update properties of this object
1599
+ def update!(**args)
1600
+ @page_token = args[:page_token] if args.key?(:page_token)
1601
+ @page_size = args[:page_size] if args.key?(:page_size)
1602
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
1603
+ @types = args[:types] if args.key?(:types)
1604
+ @name = args[:name] if args.key?(:name)
1605
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1606
+ end
1607
+ end
1608
+
1609
+ # The read group set search response.
1610
+ class SearchReadGroupSetsResponse
1611
+ include Google::Apis::Core::Hashable
1612
+
1613
+ # The list of matching read group sets.
1614
+ # Corresponds to the JSON property `readGroupSets`
1615
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroupSet>]
1616
+ attr_accessor :read_group_sets
1617
+
1618
+ # The continuation token, which is used to page through large result sets.
1619
+ # Provide this value in a subsequent request to return the next page of
1620
+ # results. This field will be empty if there aren't any additional results.
1621
+ # Corresponds to the JSON property `nextPageToken`
1622
+ # @return [String]
1623
+ attr_accessor :next_page_token
1624
+
1625
+ def initialize(**args)
1626
+ update!(**args)
1627
+ end
1628
+
1629
+ # Update properties of this object
1630
+ def update!(**args)
1631
+ @read_group_sets = args[:read_group_sets] if args.key?(:read_group_sets)
1632
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1633
+ end
1634
+ end
1635
+
1636
+ # A linear alignment can be represented by one CIGAR string. Describes the
1637
+ # mapped position and local alignment of the read to the reference.
1638
+ class LinearAlignment
1639
+ include Google::Apis::Core::Hashable
1640
+
1641
+ # An abstraction for referring to a genomic position, in relation to some
1642
+ # already known reference. For now, represents a genomic position as a
1643
+ # reference name, a base number on that reference (0-based), and a
1644
+ # determination of forward or reverse strand.
1645
+ # Corresponds to the JSON property `position`
1646
+ # @return [Google::Apis::GenomicsV1::Position]
1647
+ attr_accessor :position
1648
+
1649
+ # Represents the local alignment of this sequence (alignment matches, indels,
1650
+ # etc) against the reference.
1651
+ # Corresponds to the JSON property `cigar`
1652
+ # @return [Array<Google::Apis::GenomicsV1::CigarUnit>]
1653
+ attr_accessor :cigar
1654
+
1655
+ # The mapping quality of this alignment. Represents how likely
1656
+ # the read maps to this position as opposed to other locations.
1657
+ # Specifically, this is -10 log10 Pr(mapping position is wrong), rounded to
1658
+ # the nearest integer.
1659
+ # Corresponds to the JSON property `mappingQuality`
1660
+ # @return [Fixnum]
1661
+ attr_accessor :mapping_quality
1662
+
1663
+ def initialize(**args)
1664
+ update!(**args)
1665
+ end
1666
+
1667
+ # Update properties of this object
1668
+ def update!(**args)
1669
+ @position = args[:position] if args.key?(:position)
1670
+ @cigar = args[:cigar] if args.key?(:cigar)
1671
+ @mapping_quality = args[:mapping_quality] if args.key?(:mapping_quality)
1672
+ end
1673
+ end
1674
+
1675
+ #
1676
+ class SearchReferencesRequest
1677
+ include Google::Apis::Core::Hashable
1678
+
1679
+ # If present, return references for which the
1680
+ # md5checksum matches exactly.
1681
+ # Corresponds to the JSON property `md5checksums`
1682
+ # @return [Array<String>]
1683
+ attr_accessor :md5checksums
1684
+
1685
+ # If present, return references for which a prefix of any of
1686
+ # sourceAccessions match
1687
+ # any of these strings. Accession numbers typically have a main number and a
1688
+ # version, for example `GCF_000001405.26`.
1689
+ # Corresponds to the JSON property `accessions`
1690
+ # @return [Array<String>]
1691
+ attr_accessor :accessions
1692
+
1693
+ # The continuation token, which is used to page through large result sets.
1694
+ # To get the next page of results, set this parameter to the value of
1695
+ # `nextPageToken` from the previous response.
1696
+ # Corresponds to the JSON property `pageToken`
1697
+ # @return [String]
1698
+ attr_accessor :page_token
1699
+
1700
+ # If present, return only references which belong to this reference set.
1701
+ # Corresponds to the JSON property `referenceSetId`
1702
+ # @return [String]
1703
+ attr_accessor :reference_set_id
1704
+
1705
+ # The maximum number of results to return in a single page. If unspecified,
1706
+ # defaults to 1024. The maximum value is 4096.
1707
+ # Corresponds to the JSON property `pageSize`
1708
+ # @return [Fixnum]
1709
+ attr_accessor :page_size
1710
+
1711
+ def initialize(**args)
1712
+ update!(**args)
1713
+ end
1714
+
1715
+ # Update properties of this object
1716
+ def update!(**args)
1717
+ @md5checksums = args[:md5checksums] if args.key?(:md5checksums)
1718
+ @accessions = args[:accessions] if args.key?(:accessions)
1719
+ @page_token = args[:page_token] if args.key?(:page_token)
1720
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1721
+ @page_size = args[:page_size] if args.key?(:page_size)
1722
+ end
1723
+ end
1724
+
1725
+ # A Dataset is a collection of genomic data.
1726
+ # For more genomics resource definitions, see [Fundamentals of Google
1727
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1728
+ class Dataset
1729
+ include Google::Apis::Core::Hashable
1730
+
1731
+ # The time this dataset was created, in seconds from the epoch.
1732
+ # Corresponds to the JSON property `createTime`
1733
+ # @return [String]
1734
+ attr_accessor :create_time
1735
+
1736
+ # The dataset name.
1737
+ # Corresponds to the JSON property `name`
1738
+ # @return [String]
1739
+ attr_accessor :name
1740
+
1741
+ # The Google Cloud project ID that this dataset belongs to.
1742
+ # Corresponds to the JSON property `projectId`
1743
+ # @return [String]
1744
+ attr_accessor :project_id
1745
+
1746
+ # The server-generated dataset ID, unique across all datasets.
1747
+ # Corresponds to the JSON property `id`
1748
+ # @return [String]
1749
+ attr_accessor :id
1750
+
1751
+ def initialize(**args)
1752
+ update!(**args)
1753
+ end
1754
+
1755
+ # Update properties of this object
1756
+ def update!(**args)
1757
+ @create_time = args[:create_time] if args.key?(:create_time)
1758
+ @name = args[:name] if args.key?(:name)
1759
+ @project_id = args[:project_id] if args.key?(:project_id)
1760
+ @id = args[:id] if args.key?(:id)
1761
+ end
1762
+ end
1763
+
1764
+ # The variant data import response.
1765
+ class ImportVariantsResponse
1766
+ include Google::Apis::Core::Hashable
1767
+
1768
+ # IDs of the call sets created during the import.
1769
+ # Corresponds to the JSON property `callSetIds`
1770
+ # @return [Array<String>]
1771
+ attr_accessor :call_set_ids
1772
+
1773
+ def initialize(**args)
1774
+ update!(**args)
1775
+ end
1776
+
1777
+ # Update properties of this object
1778
+ def update!(**args)
1779
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
1780
+ end
1781
+ end
1782
+
1783
+ # A read group is all the data that's processed the same way by the sequencer.
1784
+ class ReadGroup
1785
+ include Google::Apis::Core::Hashable
1786
+
1787
+ # The reference set the reads in this read group are aligned to.
1788
+ # Corresponds to the JSON property `referenceSetId`
1789
+ # @return [String]
1790
+ attr_accessor :reference_set_id
1791
+
1792
+ # A map of additional read group information. This must be of the form
1793
+ # map<string, string[]> (string key mapping to a list of string values).
1794
+ # Corresponds to the JSON property `info`
1795
+ # @return [Hash<String,Array<Object>>]
1796
+ attr_accessor :info
1797
+
1798
+ # The server-generated read group ID, unique for all read groups.
1799
+ # Note: This is different than the @RG ID field in the SAM spec. For that
1800
+ # value, see name.
1801
+ # Corresponds to the JSON property `id`
1802
+ # @return [String]
1803
+ attr_accessor :id
1804
+
1805
+ # The predicted insert size of this read group. The insert size is the length
1806
+ # the sequenced DNA fragment from end-to-end, not including the adapters.
1807
+ # Corresponds to the JSON property `predictedInsertSize`
1808
+ # @return [Fixnum]
1809
+ attr_accessor :predicted_insert_size
1810
+
1811
+ # The programs used to generate this read group. Programs are always
1812
+ # identical for all read groups within a read group set. For this reason,
1813
+ # only the first read group in a returned set will have this field
1814
+ # populated.
1815
+ # Corresponds to the JSON property `programs`
1816
+ # @return [Array<Google::Apis::GenomicsV1::Program>]
1817
+ attr_accessor :programs
1818
+
1819
+ # A free-form text description of this read group.
1820
+ # Corresponds to the JSON property `description`
1821
+ # @return [String]
1822
+ attr_accessor :description
1823
+
1824
+ # A client-supplied sample identifier for the reads in this read group.
1825
+ # Corresponds to the JSON property `sampleId`
1826
+ # @return [String]
1827
+ attr_accessor :sample_id
1828
+
1829
+ # The dataset to which this read group belongs.
1830
+ # Corresponds to the JSON property `datasetId`
1831
+ # @return [String]
1832
+ attr_accessor :dataset_id
1833
+
1834
+ # The experiment used to generate this read group.
1835
+ # Corresponds to the JSON property `experiment`
1836
+ # @return [Google::Apis::GenomicsV1::Experiment]
1837
+ attr_accessor :experiment
1838
+
1839
+ # The read group name. This corresponds to the @RG ID field in the SAM spec.
1840
+ # Corresponds to the JSON property `name`
1841
+ # @return [String]
1842
+ attr_accessor :name
1843
+
1844
+ def initialize(**args)
1845
+ update!(**args)
1846
+ end
1847
+
1848
+ # Update properties of this object
1849
+ def update!(**args)
1850
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1851
+ @info = args[:info] if args.key?(:info)
1852
+ @id = args[:id] if args.key?(:id)
1853
+ @predicted_insert_size = args[:predicted_insert_size] if args.key?(:predicted_insert_size)
1854
+ @programs = args[:programs] if args.key?(:programs)
1855
+ @description = args[:description] if args.key?(:description)
1856
+ @sample_id = args[:sample_id] if args.key?(:sample_id)
1857
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1858
+ @experiment = args[:experiment] if args.key?(:experiment)
1859
+ @name = args[:name] if args.key?(:name)
1860
+ end
1861
+ end
1862
+
1863
+ # A read group set is a logical collection of read groups, which are
1864
+ # collections of reads produced by a sequencer. A read group set typically
1865
+ # models reads corresponding to one sample, sequenced one way, and aligned one
1866
+ # way.
1867
+ # * A read group set belongs to one dataset.
1868
+ # * A read group belongs to one read group set.
1869
+ # * A read belongs to one read group.
1870
+ # For more genomics resource definitions, see [Fundamentals of Google
1871
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
1872
+ class ReadGroupSet
1873
+ include Google::Apis::Core::Hashable
1874
+
1875
+ # The read groups in this set. There are typically 1-10 read groups in a read
1876
+ # group set.
1877
+ # Corresponds to the JSON property `readGroups`
1878
+ # @return [Array<Google::Apis::GenomicsV1::ReadGroup>]
1879
+ attr_accessor :read_groups
1880
+
1881
+ # The filename of the original source file for this read group set, if any.
1882
+ # Corresponds to the JSON property `filename`
1883
+ # @return [String]
1884
+ attr_accessor :filename
1885
+
1886
+ # The read group set name. By default this will be initialized to the sample
1887
+ # name of the sequenced data contained in this set.
1888
+ # Corresponds to the JSON property `name`
1889
+ # @return [String]
1890
+ attr_accessor :name
1891
+
1892
+ # The reference set to which the reads in this read group set are aligned.
1893
+ # Corresponds to the JSON property `referenceSetId`
1894
+ # @return [String]
1895
+ attr_accessor :reference_set_id
1896
+
1897
+ # A map of additional read group set information.
1898
+ # Corresponds to the JSON property `info`
1899
+ # @return [Hash<String,Array<Object>>]
1900
+ attr_accessor :info
1901
+
1902
+ # The server-generated read group set ID, unique for all read group sets.
1903
+ # Corresponds to the JSON property `id`
1904
+ # @return [String]
1905
+ attr_accessor :id
1906
+
1907
+ # The dataset to which this read group set belongs.
1908
+ # Corresponds to the JSON property `datasetId`
1909
+ # @return [String]
1910
+ attr_accessor :dataset_id
1911
+
1912
+ def initialize(**args)
1913
+ update!(**args)
1914
+ end
1915
+
1916
+ # Update properties of this object
1917
+ def update!(**args)
1918
+ @read_groups = args[:read_groups] if args.key?(:read_groups)
1919
+ @filename = args[:filename] if args.key?(:filename)
1920
+ @name = args[:name] if args.key?(:name)
1921
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
1922
+ @info = args[:info] if args.key?(:info)
1923
+ @id = args[:id] if args.key?(:id)
1924
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
1925
+ end
1926
+ end
1927
+
1928
+ # The search variant sets response.
1929
+ class SearchVariantSetsResponse
1930
+ include Google::Apis::Core::Hashable
1931
+
1932
+ # The continuation token, which is used to page through large result sets.
1933
+ # Provide this value in a subsequent request to return the next page of
1934
+ # results. This field will be empty if there aren't any additional results.
1935
+ # Corresponds to the JSON property `nextPageToken`
1936
+ # @return [String]
1937
+ attr_accessor :next_page_token
1938
+
1939
+ # The variant sets belonging to the requested dataset.
1940
+ # Corresponds to the JSON property `variantSets`
1941
+ # @return [Array<Google::Apis::GenomicsV1::VariantSet>]
1942
+ attr_accessor :variant_sets
1943
+
1944
+ def initialize(**args)
1945
+ update!(**args)
1946
+ end
1947
+
1948
+ # Update properties of this object
1949
+ def update!(**args)
1950
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
1951
+ @variant_sets = args[:variant_sets] if args.key?(:variant_sets)
1952
+ end
1953
+ end
1954
+
1955
+ # A generic empty message that you can re-use to avoid defining duplicated
1956
+ # empty messages in your APIs. A typical example is to use it as the request
1957
+ # or the response type of an API method. For instance:
1958
+ # service Foo `
1959
+ # rpc Bar(google.protobuf.Empty) returns (google.protobuf.Empty);
1960
+ # `
1961
+ # The JSON representation for `Empty` is empty JSON object ````.
1962
+ class Empty
1963
+ include Google::Apis::Core::Hashable
1964
+
1965
+ def initialize(**args)
1966
+ update!(**args)
1967
+ end
1968
+
1969
+ # Update properties of this object
1970
+ def update!(**args)
1971
+ end
1972
+ end
1973
+
1974
+ #
1975
+ class Entry
1976
+ include Google::Apis::Core::Hashable
1977
+
1978
+ # The `Status` type defines a logical error model that is suitable for different
1979
+ # programming environments, including REST APIs and RPC APIs. It is used by
1980
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
1981
+ # - Simple to use and understand for most users
1982
+ # - Flexible enough to meet unexpected needs
1983
+ # # Overview
1984
+ # The `Status` message contains three pieces of data: error code, error message,
1985
+ # and error details. The error code should be an enum value of
1986
+ # google.rpc.Code, but it may accept additional error codes if needed. The
1987
+ # error message should be a developer-facing English message that helps
1988
+ # developers *understand* and *resolve* the error. If a localized user-facing
1989
+ # error message is needed, put the localized message in the error details or
1990
+ # localize it in the client. The optional error details may contain arbitrary
1991
+ # information about the error. There is a predefined set of error detail types
1992
+ # in the package `google.rpc` which can be used for common error conditions.
1993
+ # # Language mapping
1994
+ # The `Status` message is the logical representation of the error model, but it
1995
+ # is not necessarily the actual wire format. When the `Status` message is
1996
+ # exposed in different client libraries and different wire protocols, it can be
1997
+ # mapped differently. For example, it will likely be mapped to some exceptions
1998
+ # in Java, but more likely mapped to some error codes in C.
1999
+ # # Other uses
2000
+ # The error model and the `Status` message can be used in a variety of
2001
+ # environments, either with or without APIs, to provide a
2002
+ # consistent developer experience across different environments.
2003
+ # Example uses of this error model include:
2004
+ # - Partial errors. If a service needs to return partial errors to the client,
2005
+ # it may embed the `Status` in the normal response to indicate the partial
2006
+ # errors.
2007
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2008
+ # have a `Status` message for error reporting purpose.
2009
+ # - Batch operations. If a client uses batch request and batch response, the
2010
+ # `Status` message should be used directly inside batch response, one for
2011
+ # each error sub-response.
2012
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2013
+ # results in its response, the status of those operations should be
2014
+ # represented directly using the `Status` message.
2015
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2016
+ # be used directly after any stripping needed for security/privacy reasons.
2017
+ # Corresponds to the JSON property `status`
2018
+ # @return [Google::Apis::GenomicsV1::Status]
2019
+ attr_accessor :status
2020
+
2021
+ # An annotation describes a region of reference genome. The value of an
2022
+ # annotation may be one of several canonical types, supplemented by arbitrary
2023
+ # info tags. An annotation is not inherently associated with a specific
2024
+ # sample or individual (though a client could choose to use annotations in
2025
+ # this way). Example canonical annotation types are `GENE` and
2026
+ # `VARIANT`.
2027
+ # Corresponds to the JSON property `annotation`
2028
+ # @return [Google::Apis::GenomicsV1::Annotation]
2029
+ attr_accessor :annotation
2030
+
2031
+ def initialize(**args)
2032
+ update!(**args)
2033
+ end
2034
+
2035
+ # Update properties of this object
2036
+ def update!(**args)
2037
+ @status = args[:status] if args.key?(:status)
2038
+ @annotation = args[:annotation] if args.key?(:annotation)
2039
+ end
2040
+ end
2041
+
2042
+ # An abstraction for referring to a genomic position, in relation to some
2043
+ # already known reference. For now, represents a genomic position as a
2044
+ # reference name, a base number on that reference (0-based), and a
2045
+ # determination of forward or reverse strand.
2046
+ class Position
2047
+ include Google::Apis::Core::Hashable
2048
+
2049
+ # Whether this position is on the reverse strand, as opposed to the forward
2050
+ # strand.
2051
+ # Corresponds to the JSON property `reverseStrand`
2052
+ # @return [Boolean]
2053
+ attr_accessor :reverse_strand
2054
+ alias_method :reverse_strand?, :reverse_strand
2055
+
2056
+ # The 0-based offset from the start of the forward strand for that reference.
2057
+ # Corresponds to the JSON property `position`
2058
+ # @return [String]
2059
+ attr_accessor :position
2060
+
2061
+ # The name of the reference in whatever reference set is being used.
2062
+ # Corresponds to the JSON property `referenceName`
2063
+ # @return [String]
2064
+ attr_accessor :reference_name
2065
+
2066
+ def initialize(**args)
2067
+ update!(**args)
2068
+ end
2069
+
2070
+ # Update properties of this object
2071
+ def update!(**args)
2072
+ @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
2073
+ @position = args[:position] if args.key?(:position)
2074
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2075
+ end
2076
+ end
2077
+
2078
+ #
2079
+ class SearchReferenceSetsResponse
2080
+ include Google::Apis::Core::Hashable
2081
+
2082
+ # The matching references sets.
2083
+ # Corresponds to the JSON property `referenceSets`
2084
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceSet>]
2085
+ attr_accessor :reference_sets
2086
+
2087
+ # The continuation token, which is used to page through large result sets.
2088
+ # Provide this value in a subsequent request to return the next page of
2089
+ # results. This field will be empty if there aren't any additional results.
2090
+ # Corresponds to the JSON property `nextPageToken`
2091
+ # @return [String]
2092
+ attr_accessor :next_page_token
2093
+
2094
+ def initialize(**args)
2095
+ update!(**args)
2096
+ end
2097
+
2098
+ # Update properties of this object
2099
+ def update!(**args)
2100
+ @reference_sets = args[:reference_sets] if args.key?(:reference_sets)
2101
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2102
+ end
2103
+ end
2104
+
2105
+ # The call set search request.
2106
+ class SearchCallSetsRequest
2107
+ include Google::Apis::Core::Hashable
2108
+
2109
+ # Restrict the query to call sets within the given variant sets. At least one
2110
+ # ID must be provided.
2111
+ # Corresponds to the JSON property `variantSetIds`
2112
+ # @return [Array<String>]
2113
+ attr_accessor :variant_set_ids
2114
+
2115
+ # Only return call sets for which a substring of the name matches this
2116
+ # string.
2117
+ # Corresponds to the JSON property `name`
2118
+ # @return [String]
2119
+ attr_accessor :name
2120
+
2121
+ # The continuation token, which is used to page through large result sets.
2122
+ # To get the next page of results, set this parameter to the value of
2123
+ # `nextPageToken` from the previous response.
2124
+ # Corresponds to the JSON property `pageToken`
2125
+ # @return [String]
2126
+ attr_accessor :page_token
2127
+
2128
+ # The maximum number of results to return in a single page. If unspecified,
2129
+ # defaults to 1024.
2130
+ # Corresponds to the JSON property `pageSize`
2131
+ # @return [Fixnum]
2132
+ attr_accessor :page_size
2133
+
2134
+ def initialize(**args)
2135
+ update!(**args)
2136
+ end
2137
+
2138
+ # Update properties of this object
2139
+ def update!(**args)
2140
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
2141
+ @name = args[:name] if args.key?(:name)
2142
+ @page_token = args[:page_token] if args.key?(:page_token)
2143
+ @page_size = args[:page_size] if args.key?(:page_size)
2144
+ end
2145
+ end
2146
+
2147
+ # The read group set import request.
2148
+ class ImportReadGroupSetsRequest
2149
+ include Google::Apis::Core::Hashable
2150
+
2151
+ # The reference set to which the imported read group sets are aligned to, if
2152
+ # any. The reference names of this reference set must be a superset of those
2153
+ # found in the imported file headers. If no reference set id is provided, a
2154
+ # best effort is made to associate with a matching reference set.
2155
+ # Corresponds to the JSON property `referenceSetId`
2156
+ # @return [String]
2157
+ attr_accessor :reference_set_id
2158
+
2159
+ # The partition strategy describes how read groups are partitioned into read
2160
+ # group sets.
2161
+ # Corresponds to the JSON property `partitionStrategy`
2162
+ # @return [String]
2163
+ attr_accessor :partition_strategy
2164
+
2165
+ # Required. The ID of the dataset these read group sets will belong to. The
2166
+ # caller must have WRITE permissions to this dataset.
2167
+ # Corresponds to the JSON property `datasetId`
2168
+ # @return [String]
2169
+ attr_accessor :dataset_id
2170
+
2171
+ # A list of URIs pointing at [BAM
2172
+ # files](https://samtools.github.io/hts-specs/SAMv1.pdf)
2173
+ # in Google Cloud Storage.
2174
+ # Those URIs can include wildcards (*), but do not add or remove
2175
+ # matching files before import has completed.
2176
+ # Note that Google Cloud Storage object listing is only eventually
2177
+ # consistent: files added may be not be immediately visible to
2178
+ # everyone. Thus, if using a wildcard it is preferable not to start
2179
+ # the import immediately after the files are created.
2180
+ # Corresponds to the JSON property `sourceUris`
2181
+ # @return [Array<String>]
2182
+ attr_accessor :source_uris
2183
+
2184
+ def initialize(**args)
2185
+ update!(**args)
2186
+ end
2187
+
2188
+ # Update properties of this object
2189
+ def update!(**args)
2190
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2191
+ @partition_strategy = args[:partition_strategy] if args.key?(:partition_strategy)
2192
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2193
+ @source_uris = args[:source_uris] if args.key?(:source_uris)
2194
+ end
2195
+ end
2196
+
2197
+ # Defines an Identity and Access Management (IAM) policy. It is used to
2198
+ # specify access control policies for Cloud Platform resources.
2199
+ # A `Policy` consists of a list of `bindings`. A `Binding` binds a list of
2200
+ # `members` to a `role`, where the members can be user accounts, Google groups,
2201
+ # Google domains, and service accounts. A `role` is a named list of permissions
2202
+ # defined by IAM.
2203
+ # **Example**
2204
+ # `
2205
+ # "bindings": [
2206
+ # `
2207
+ # "role": "roles/owner",
2208
+ # "members": [
2209
+ # "user:mike@example.com",
2210
+ # "group:admins@example.com",
2211
+ # "domain:google.com",
2212
+ # "serviceAccount:my-other-app@appspot.gserviceaccount.com",
2213
+ # ]
2214
+ # `,
2215
+ # `
2216
+ # "role": "roles/viewer",
2217
+ # "members": ["user:sean@example.com"]
2218
+ # `
2219
+ # ]
2220
+ # `
2221
+ # For a description of IAM and its features, see the
2222
+ # [IAM developer's guide](https://cloud.google.com/iam).
2223
+ class Policy
2224
+ include Google::Apis::Core::Hashable
2225
+
2226
+ # `etag` is used for optimistic concurrency control as a way to help
2227
+ # prevent simultaneous updates of a policy from overwriting each other.
2228
+ # It is strongly suggested that systems make use of the `etag` in the
2229
+ # read-modify-write cycle to perform policy updates in order to avoid race
2230
+ # conditions: An `etag` is returned in the response to `getIamPolicy`, and
2231
+ # systems are expected to put that etag in the request to `setIamPolicy` to
2232
+ # ensure that their change will be applied to the same version of the policy.
2233
+ # If no `etag` is provided in the call to `setIamPolicy`, then the existing
2234
+ # policy is overwritten blindly.
2235
+ # Corresponds to the JSON property `etag`
2236
+ # @return [String]
2237
+ attr_accessor :etag
2238
+
2239
+ # Version of the `Policy`. The default version is 0.
2240
+ # Corresponds to the JSON property `version`
2241
+ # @return [Fixnum]
2242
+ attr_accessor :version
2243
+
2244
+ # Associates a list of `members` to a `role`.
2245
+ # Multiple `bindings` must not be specified for the same `role`.
2246
+ # `bindings` with no members will result in an error.
2247
+ # Corresponds to the JSON property `bindings`
2248
+ # @return [Array<Google::Apis::GenomicsV1::Binding>]
2249
+ attr_accessor :bindings
2250
+
2251
+ def initialize(**args)
2252
+ update!(**args)
2253
+ end
2254
+
2255
+ # Update properties of this object
2256
+ def update!(**args)
2257
+ @etag = args[:etag] if args.key?(:etag)
2258
+ @version = args[:version] if args.key?(:version)
2259
+ @bindings = args[:bindings] if args.key?(:bindings)
2260
+ end
2261
+ end
2262
+
2263
+ # The read search request.
2264
+ class SearchReadsRequest
2265
+ include Google::Apis::Core::Hashable
2266
+
2267
+ # The reference sequence name, for example `chr1`, `1`, or `chrX`. If set to
2268
+ # `*`, only unmapped reads are returned. If unspecified, all reads (mapped
2269
+ # and unmapped) are returned.
2270
+ # Corresponds to the JSON property `referenceName`
2271
+ # @return [String]
2272
+ attr_accessor :reference_name
2273
+
2274
+ # The IDs of the read groups sets within which to search for reads. All
2275
+ # specified read group sets must be aligned against a common set of reference
2276
+ # sequences; this defines the genomic coordinates for the query. Must specify
2277
+ # one of `readGroupSetIds` or `readGroupIds`.
2278
+ # Corresponds to the JSON property `readGroupSetIds`
2279
+ # @return [Array<String>]
2280
+ attr_accessor :read_group_set_ids
2281
+
2282
+ # The IDs of the read groups within which to search for reads. All specified
2283
+ # read groups must belong to the same read group sets. Must specify one of
2284
+ # `readGroupSetIds` or `readGroupIds`.
2285
+ # Corresponds to the JSON property `readGroupIds`
2286
+ # @return [Array<String>]
2287
+ attr_accessor :read_group_ids
2288
+
2289
+ # The end position of the range on the reference, 0-based exclusive. If
2290
+ # specified, `referenceName` must also be specified.
2291
+ # Corresponds to the JSON property `end`
2292
+ # @return [String]
2293
+ attr_accessor :end
2294
+
2295
+ # The continuation token, which is used to page through large result sets.
2296
+ # To get the next page of results, set this parameter to the value of
2297
+ # `nextPageToken` from the previous response.
2298
+ # Corresponds to the JSON property `pageToken`
2299
+ # @return [String]
2300
+ attr_accessor :page_token
2301
+
2302
+ # The maximum number of results to return in a single page. If unspecified,
2303
+ # defaults to 256. The maximum value is 2048.
2304
+ # Corresponds to the JSON property `pageSize`
2305
+ # @return [Fixnum]
2306
+ attr_accessor :page_size
2307
+
2308
+ # The start position of the range on the reference, 0-based inclusive. If
2309
+ # specified, `referenceName` must also be specified.
2310
+ # Corresponds to the JSON property `start`
2311
+ # @return [String]
2312
+ attr_accessor :start
2313
+
2314
+ def initialize(**args)
2315
+ update!(**args)
2316
+ end
2317
+
2318
+ # Update properties of this object
2319
+ def update!(**args)
2320
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2321
+ @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2322
+ @read_group_ids = args[:read_group_ids] if args.key?(:read_group_ids)
2323
+ @end = args[:end] if args.key?(:end)
2324
+ @page_token = args[:page_token] if args.key?(:page_token)
2325
+ @page_size = args[:page_size] if args.key?(:page_size)
2326
+ @start = args[:start] if args.key?(:start)
2327
+ end
2328
+ end
2329
+
2330
+ # The request message for Operations.CancelOperation.
2331
+ class CancelOperationRequest
2332
+ include Google::Apis::Core::Hashable
2333
+
2334
+ def initialize(**args)
2335
+ update!(**args)
2336
+ end
2337
+
2338
+ # Update properties of this object
2339
+ def update!(**args)
2340
+ end
2341
+ end
2342
+
2343
+ # An annotation describes a region of reference genome. The value of an
2344
+ # annotation may be one of several canonical types, supplemented by arbitrary
2345
+ # info tags. An annotation is not inherently associated with a specific
2346
+ # sample or individual (though a client could choose to use annotations in
2347
+ # this way). Example canonical annotation types are `GENE` and
2348
+ # `VARIANT`.
2349
+ class Annotation
2350
+ include Google::Apis::Core::Hashable
2351
+
2352
+ # A transcript represents the assertion that a particular region of the
2353
+ # reference genome may be transcribed as RNA.
2354
+ # Corresponds to the JSON property `transcript`
2355
+ # @return [Google::Apis::GenomicsV1::Transcript]
2356
+ attr_accessor :transcript
2357
+
2358
+ # The start position of the range on the reference, 0-based inclusive.
2359
+ # Corresponds to the JSON property `start`
2360
+ # @return [String]
2361
+ attr_accessor :start
2362
+
2363
+ # The annotation set to which this annotation belongs.
2364
+ # Corresponds to the JSON property `annotationSetId`
2365
+ # @return [String]
2366
+ attr_accessor :annotation_set_id
2367
+
2368
+ # The display name of this annotation.
2369
+ # Corresponds to the JSON property `name`
2370
+ # @return [String]
2371
+ attr_accessor :name
2372
+
2373
+ # A variant annotation, which describes the effect of a variant on the
2374
+ # genome, the coding sequence, and/or higher level consequences at the
2375
+ # organism level e.g. pathogenicity. This field is only set for annotations
2376
+ # of type `VARIANT`.
2377
+ # Corresponds to the JSON property `variant`
2378
+ # @return [Google::Apis::GenomicsV1::VariantAnnotation]
2379
+ attr_accessor :variant
2380
+
2381
+ # The ID of the Google Genomics reference associated with this range.
2382
+ # Corresponds to the JSON property `referenceId`
2383
+ # @return [String]
2384
+ attr_accessor :reference_id
2385
+
2386
+ # The server-generated annotation ID, unique across all annotations.
2387
+ # Corresponds to the JSON property `id`
2388
+ # @return [String]
2389
+ attr_accessor :id
2390
+
2391
+ # Whether this range refers to the reverse strand, as opposed to the forward
2392
+ # strand. Note that regardless of this field, the start/end position of the
2393
+ # range always refer to the forward strand.
2394
+ # Corresponds to the JSON property `reverseStrand`
2395
+ # @return [Boolean]
2396
+ attr_accessor :reverse_strand
2397
+ alias_method :reverse_strand?, :reverse_strand
2398
+
2399
+ # The display name corresponding to the reference specified by
2400
+ # `referenceId`, for example `chr1`, `1`, or `chrX`.
2401
+ # Corresponds to the JSON property `referenceName`
2402
+ # @return [String]
2403
+ attr_accessor :reference_name
2404
+
2405
+ # The data type for this annotation. Must match the containing annotation
2406
+ # set's type.
2407
+ # Corresponds to the JSON property `type`
2408
+ # @return [String]
2409
+ attr_accessor :type
2410
+
2411
+ # A map of additional read alignment information. This must be of the form
2412
+ # map<string, string[]> (string key mapping to a list of string values).
2413
+ # Corresponds to the JSON property `info`
2414
+ # @return [Hash<String,Array<Object>>]
2415
+ attr_accessor :info
2416
+
2417
+ # The end position of the range on the reference, 0-based exclusive.
2418
+ # Corresponds to the JSON property `end`
2419
+ # @return [String]
2420
+ attr_accessor :end
2421
+
2422
+ def initialize(**args)
2423
+ update!(**args)
2424
+ end
2425
+
2426
+ # Update properties of this object
2427
+ def update!(**args)
2428
+ @transcript = args[:transcript] if args.key?(:transcript)
2429
+ @start = args[:start] if args.key?(:start)
2430
+ @annotation_set_id = args[:annotation_set_id] if args.key?(:annotation_set_id)
2431
+ @name = args[:name] if args.key?(:name)
2432
+ @variant = args[:variant] if args.key?(:variant)
2433
+ @reference_id = args[:reference_id] if args.key?(:reference_id)
2434
+ @id = args[:id] if args.key?(:id)
2435
+ @reverse_strand = args[:reverse_strand] if args.key?(:reverse_strand)
2436
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2437
+ @type = args[:type] if args.key?(:type)
2438
+ @info = args[:info] if args.key?(:info)
2439
+ @end = args[:end] if args.key?(:end)
2440
+ end
2441
+ end
2442
+
2443
+ # This resource represents a long-running operation that is the result of a
2444
+ # network API call.
2445
+ class Operation
2446
+ include Google::Apis::Core::Hashable
2447
+
2448
+ # If importing ReadGroupSets, an ImportReadGroupSetsResponse is returned. If
2449
+ # importing Variants, an ImportVariantsResponse is returned. For pipelines and
2450
+ # exports, an empty response is returned.
2451
+ # Corresponds to the JSON property `response`
2452
+ # @return [Hash<String,Object>]
2453
+ attr_accessor :response
2454
+
2455
+ # The server-assigned name, which is only unique within the same service that
2456
+ # originally returns it. For example&#58; `operations/CJHU7Oi_ChDrveSpBRjfuL-
2457
+ # qzoWAgEw`
2458
+ # Corresponds to the JSON property `name`
2459
+ # @return [String]
2460
+ attr_accessor :name
2461
+
2462
+ # The `Status` type defines a logical error model that is suitable for different
2463
+ # programming environments, including REST APIs and RPC APIs. It is used by
2464
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
2465
+ # - Simple to use and understand for most users
2466
+ # - Flexible enough to meet unexpected needs
2467
+ # # Overview
2468
+ # The `Status` message contains three pieces of data: error code, error message,
2469
+ # and error details. The error code should be an enum value of
2470
+ # google.rpc.Code, but it may accept additional error codes if needed. The
2471
+ # error message should be a developer-facing English message that helps
2472
+ # developers *understand* and *resolve* the error. If a localized user-facing
2473
+ # error message is needed, put the localized message in the error details or
2474
+ # localize it in the client. The optional error details may contain arbitrary
2475
+ # information about the error. There is a predefined set of error detail types
2476
+ # in the package `google.rpc` which can be used for common error conditions.
2477
+ # # Language mapping
2478
+ # The `Status` message is the logical representation of the error model, but it
2479
+ # is not necessarily the actual wire format. When the `Status` message is
2480
+ # exposed in different client libraries and different wire protocols, it can be
2481
+ # mapped differently. For example, it will likely be mapped to some exceptions
2482
+ # in Java, but more likely mapped to some error codes in C.
2483
+ # # Other uses
2484
+ # The error model and the `Status` message can be used in a variety of
2485
+ # environments, either with or without APIs, to provide a
2486
+ # consistent developer experience across different environments.
2487
+ # Example uses of this error model include:
2488
+ # - Partial errors. If a service needs to return partial errors to the client,
2489
+ # it may embed the `Status` in the normal response to indicate the partial
2490
+ # errors.
2491
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2492
+ # have a `Status` message for error reporting purpose.
2493
+ # - Batch operations. If a client uses batch request and batch response, the
2494
+ # `Status` message should be used directly inside batch response, one for
2495
+ # each error sub-response.
2496
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2497
+ # results in its response, the status of those operations should be
2498
+ # represented directly using the `Status` message.
2499
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2500
+ # be used directly after any stripping needed for security/privacy reasons.
2501
+ # Corresponds to the JSON property `error`
2502
+ # @return [Google::Apis::GenomicsV1::Status]
2503
+ attr_accessor :error
2504
+
2505
+ # An OperationMetadata object. This will always be returned with the Operation.
2506
+ # Corresponds to the JSON property `metadata`
2507
+ # @return [Hash<String,Object>]
2508
+ attr_accessor :metadata
2509
+
2510
+ # If the value is `false`, it means the operation is still in progress.
2511
+ # If true, the operation is completed, and either `error` or `response` is
2512
+ # available.
2513
+ # Corresponds to the JSON property `done`
2514
+ # @return [Boolean]
2515
+ attr_accessor :done
2516
+ alias_method :done?, :done
2517
+
2518
+ def initialize(**args)
2519
+ update!(**args)
2520
+ end
2521
+
2522
+ # Update properties of this object
2523
+ def update!(**args)
2524
+ @response = args[:response] if args.key?(:response)
2525
+ @name = args[:name] if args.key?(:name)
2526
+ @error = args[:error] if args.key?(:error)
2527
+ @metadata = args[:metadata] if args.key?(:metadata)
2528
+ @done = args[:done] if args.key?(:done)
2529
+ end
2530
+ end
2531
+
2532
+ # Runtime metadata that will be populated in the
2533
+ # runtimeMetadata
2534
+ # field of the Operation associated with a RunPipeline execution.
2535
+ class RuntimeMetadata
2536
+ include Google::Apis::Core::Hashable
2537
+
2538
+ # Describes a Compute Engine resource that is being managed by a running
2539
+ # pipeline.
2540
+ # Corresponds to the JSON property `computeEngine`
2541
+ # @return [Google::Apis::GenomicsV1::ComputeEngine]
2542
+ attr_accessor :compute_engine
2543
+
2544
+ def initialize(**args)
2545
+ update!(**args)
2546
+ end
2547
+
2548
+ # Update properties of this object
2549
+ def update!(**args)
2550
+ @compute_engine = args[:compute_engine] if args.key?(:compute_engine)
2551
+ end
2552
+ end
2553
+
2554
+ # The read group set import response.
2555
+ class ImportReadGroupSetsResponse
2556
+ include Google::Apis::Core::Hashable
2557
+
2558
+ # IDs of the read group sets that were created.
2559
+ # Corresponds to the JSON property `readGroupSetIds`
2560
+ # @return [Array<String>]
2561
+ attr_accessor :read_group_set_ids
2562
+
2563
+ def initialize(**args)
2564
+ update!(**args)
2565
+ end
2566
+
2567
+ # Update properties of this object
2568
+ def update!(**args)
2569
+ @read_group_set_ids = args[:read_group_set_ids] if args.key?(:read_group_set_ids)
2570
+ end
2571
+ end
2572
+
2573
+ # A call represents the determination of genotype with respect to a particular
2574
+ # variant. It may include associated information such as quality and phasing.
2575
+ # For example, a call might assign a probability of 0.32 to the occurrence of
2576
+ # a SNP named rs1234 in a call set with the name NA12345.
2577
+ class VariantCall
2578
+ include Google::Apis::Core::Hashable
2579
+
2580
+ # If this field is present, this variant call's genotype ordering implies
2581
+ # the phase of the bases and is consistent with any other variant calls in
2582
+ # the same reference sequence which have the same phaseset value.
2583
+ # When importing data from VCF, if the genotype data was phased but no
2584
+ # phase set was specified this field will be set to `*`.
2585
+ # Corresponds to the JSON property `phaseset`
2586
+ # @return [String]
2587
+ attr_accessor :phaseset
2588
+
2589
+ # A map of additional variant call information. This must be of the form
2590
+ # map<string, string[]> (string key mapping to a list of string values).
2591
+ # Corresponds to the JSON property `info`
2592
+ # @return [Hash<String,Array<Object>>]
2593
+ attr_accessor :info
2594
+
2595
+ # The name of the call set this variant call belongs to.
2596
+ # Corresponds to the JSON property `callSetName`
2597
+ # @return [String]
2598
+ attr_accessor :call_set_name
2599
+
2600
+ # The genotype likelihoods for this variant call. Each array entry
2601
+ # represents how likely a specific genotype is for this call. The value
2602
+ # ordering is defined by the GL tag in the VCF spec.
2603
+ # If Phred-scaled genotype likelihood scores (PL) are available and
2604
+ # log10(P) genotype likelihood scores (GL) are not, PL scores are converted
2605
+ # to GL scores. If both are available, PL scores are stored in `info`.
2606
+ # Corresponds to the JSON property `genotypeLikelihood`
2607
+ # @return [Array<Float>]
2608
+ attr_accessor :genotype_likelihood
2609
+
2610
+ # The ID of the call set this variant call belongs to.
2611
+ # Corresponds to the JSON property `callSetId`
2612
+ # @return [String]
2613
+ attr_accessor :call_set_id
2614
+
2615
+ # The genotype of this variant call. Each value represents either the value
2616
+ # of the `referenceBases` field or a 1-based index into
2617
+ # `alternateBases`. If a variant had a `referenceBases`
2618
+ # value of `T` and an `alternateBases`
2619
+ # value of `["A", "C"]`, and the `genotype` was
2620
+ # `[2, 1]`, that would mean the call
2621
+ # represented the heterozygous value `CA` for this variant.
2622
+ # If the `genotype` was instead `[0, 1]`, the
2623
+ # represented value would be `TA`. Ordering of the
2624
+ # genotype values is important if the `phaseset` is present.
2625
+ # If a genotype is not called (that is, a `.` is present in the
2626
+ # GT string) -1 is returned.
2627
+ # Corresponds to the JSON property `genotype`
2628
+ # @return [Array<Fixnum>]
2629
+ attr_accessor :genotype
2630
+
2631
+ def initialize(**args)
2632
+ update!(**args)
2633
+ end
2634
+
2635
+ # Update properties of this object
2636
+ def update!(**args)
2637
+ @phaseset = args[:phaseset] if args.key?(:phaseset)
2638
+ @info = args[:info] if args.key?(:info)
2639
+ @call_set_name = args[:call_set_name] if args.key?(:call_set_name)
2640
+ @genotype_likelihood = args[:genotype_likelihood] if args.key?(:genotype_likelihood)
2641
+ @call_set_id = args[:call_set_id] if args.key?(:call_set_id)
2642
+ @genotype = args[:genotype] if args.key?(:genotype)
2643
+ end
2644
+ end
2645
+
2646
+ # The variant search response.
2647
+ class SearchVariantsResponse
2648
+ include Google::Apis::Core::Hashable
2649
+
2650
+ # The continuation token, which is used to page through large result sets.
2651
+ # Provide this value in a subsequent request to return the next page of
2652
+ # results. This field will be empty if there aren't any additional results.
2653
+ # Corresponds to the JSON property `nextPageToken`
2654
+ # @return [String]
2655
+ attr_accessor :next_page_token
2656
+
2657
+ # The list of matching Variants.
2658
+ # Corresponds to the JSON property `variants`
2659
+ # @return [Array<Google::Apis::GenomicsV1::Variant>]
2660
+ attr_accessor :variants
2661
+
2662
+ def initialize(**args)
2663
+ update!(**args)
2664
+ end
2665
+
2666
+ # Update properties of this object
2667
+ def update!(**args)
2668
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2669
+ @variants = args[:variants] if args.key?(:variants)
2670
+ end
2671
+ end
2672
+
2673
+ #
2674
+ class ListBasesResponse
2675
+ include Google::Apis::Core::Hashable
2676
+
2677
+ # A substring of the bases that make up this reference.
2678
+ # Corresponds to the JSON property `sequence`
2679
+ # @return [String]
2680
+ attr_accessor :sequence
2681
+
2682
+ # The offset position (0-based) of the given `sequence` from the
2683
+ # start of this `Reference`. This value will differ for each page
2684
+ # in a paginated request.
2685
+ # Corresponds to the JSON property `offset`
2686
+ # @return [String]
2687
+ attr_accessor :offset
2688
+
2689
+ # The continuation token, which is used to page through large result sets.
2690
+ # Provide this value in a subsequent request to return the next page of
2691
+ # results. This field will be empty if there aren't any additional results.
2692
+ # Corresponds to the JSON property `nextPageToken`
2693
+ # @return [String]
2694
+ attr_accessor :next_page_token
2695
+
2696
+ def initialize(**args)
2697
+ update!(**args)
2698
+ end
2699
+
2700
+ # Update properties of this object
2701
+ def update!(**args)
2702
+ @sequence = args[:sequence] if args.key?(:sequence)
2703
+ @offset = args[:offset] if args.key?(:offset)
2704
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
2705
+ end
2706
+ end
2707
+
2708
+ # The `Status` type defines a logical error model that is suitable for different
2709
+ # programming environments, including REST APIs and RPC APIs. It is used by
2710
+ # [gRPC](https://github.com/grpc). The error model is designed to be:
2711
+ # - Simple to use and understand for most users
2712
+ # - Flexible enough to meet unexpected needs
2713
+ # # Overview
2714
+ # The `Status` message contains three pieces of data: error code, error message,
2715
+ # and error details. The error code should be an enum value of
2716
+ # google.rpc.Code, but it may accept additional error codes if needed. The
2717
+ # error message should be a developer-facing English message that helps
2718
+ # developers *understand* and *resolve* the error. If a localized user-facing
2719
+ # error message is needed, put the localized message in the error details or
2720
+ # localize it in the client. The optional error details may contain arbitrary
2721
+ # information about the error. There is a predefined set of error detail types
2722
+ # in the package `google.rpc` which can be used for common error conditions.
2723
+ # # Language mapping
2724
+ # The `Status` message is the logical representation of the error model, but it
2725
+ # is not necessarily the actual wire format. When the `Status` message is
2726
+ # exposed in different client libraries and different wire protocols, it can be
2727
+ # mapped differently. For example, it will likely be mapped to some exceptions
2728
+ # in Java, but more likely mapped to some error codes in C.
2729
+ # # Other uses
2730
+ # The error model and the `Status` message can be used in a variety of
2731
+ # environments, either with or without APIs, to provide a
2732
+ # consistent developer experience across different environments.
2733
+ # Example uses of this error model include:
2734
+ # - Partial errors. If a service needs to return partial errors to the client,
2735
+ # it may embed the `Status` in the normal response to indicate the partial
2736
+ # errors.
2737
+ # - Workflow errors. A typical workflow has multiple steps. Each step may
2738
+ # have a `Status` message for error reporting purpose.
2739
+ # - Batch operations. If a client uses batch request and batch response, the
2740
+ # `Status` message should be used directly inside batch response, one for
2741
+ # each error sub-response.
2742
+ # - Asynchronous operations. If an API call embeds asynchronous operation
2743
+ # results in its response, the status of those operations should be
2744
+ # represented directly using the `Status` message.
2745
+ # - Logging. If some API errors are stored in logs, the message `Status` could
2746
+ # be used directly after any stripping needed for security/privacy reasons.
2747
+ class Status
2748
+ include Google::Apis::Core::Hashable
2749
+
2750
+ # A developer-facing error message, which should be in English. Any
2751
+ # user-facing error message should be localized and sent in the
2752
+ # google.rpc.Status.details field, or localized by the client.
2753
+ # Corresponds to the JSON property `message`
2754
+ # @return [String]
2755
+ attr_accessor :message
2756
+
2757
+ # A list of messages that carry the error details. There will be a
2758
+ # common set of message types for APIs to use.
2759
+ # Corresponds to the JSON property `details`
2760
+ # @return [Array<Hash<String,Object>>]
2761
+ attr_accessor :details
2762
+
2763
+ # The status code, which should be an enum value of google.rpc.Code.
2764
+ # Corresponds to the JSON property `code`
2765
+ # @return [Fixnum]
2766
+ attr_accessor :code
2767
+
2768
+ def initialize(**args)
2769
+ update!(**args)
2770
+ end
2771
+
2772
+ # Update properties of this object
2773
+ def update!(**args)
2774
+ @message = args[:message] if args.key?(:message)
2775
+ @details = args[:details] if args.key?(:details)
2776
+ @code = args[:code] if args.key?(:code)
2777
+ end
2778
+ end
2779
+
2780
+ #
2781
+ class UndeleteDatasetRequest
2782
+ include Google::Apis::Core::Hashable
2783
+
2784
+ def initialize(**args)
2785
+ update!(**args)
2786
+ end
2787
+
2788
+ # Update properties of this object
2789
+ def update!(**args)
2790
+ end
2791
+ end
2792
+
2793
+ # Associates `members` with a `role`.
2794
+ class Binding
2795
+ include Google::Apis::Core::Hashable
2796
+
2797
+ # Specifies the identities requesting access for a Cloud Platform resource.
2798
+ # `members` can have the following values:
2799
+ # * `allUsers`: A special identifier that represents anyone who is
2800
+ # on the internet; with or without a Google account.
2801
+ # * `allAuthenticatedUsers`: A special identifier that represents anyone
2802
+ # who is authenticated with a Google account or a service account.
2803
+ # * `user:`emailid``: An email address that represents a specific Google
2804
+ # account. For example, `alice@gmail.com` or `joe@example.com`.
2805
+ # * `serviceAccount:`emailid``: An email address that represents a service
2806
+ # account. For example, `my-other-app@appspot.gserviceaccount.com`.
2807
+ # * `group:`emailid``: An email address that represents a Google group.
2808
+ # For example, `admins@example.com`.
2809
+ # * `domain:`domain``: A Google Apps domain name that represents all the
2810
+ # users of that domain. For example, `google.com` or `example.com`.
2811
+ # Corresponds to the JSON property `members`
2812
+ # @return [Array<String>]
2813
+ attr_accessor :members
2814
+
2815
+ # Role that is assigned to `members`.
2816
+ # For example, `roles/viewer`, `roles/editor`, or `roles/owner`.
2817
+ # Required
2818
+ # Corresponds to the JSON property `role`
2819
+ # @return [String]
2820
+ attr_accessor :role
2821
+
2822
+ def initialize(**args)
2823
+ update!(**args)
2824
+ end
2825
+
2826
+ # Update properties of this object
2827
+ def update!(**args)
2828
+ @members = args[:members] if args.key?(:members)
2829
+ @role = args[:role] if args.key?(:role)
2830
+ end
2831
+ end
2832
+
2833
+ # A 0-based half-open genomic coordinate range for search requests.
2834
+ class Range
2835
+ include Google::Apis::Core::Hashable
2836
+
2837
+ # The start position of the range on the reference, 0-based inclusive.
2838
+ # Corresponds to the JSON property `start`
2839
+ # @return [String]
2840
+ attr_accessor :start
2841
+
2842
+ # The end position of the range on the reference, 0-based exclusive.
2843
+ # Corresponds to the JSON property `end`
2844
+ # @return [String]
2845
+ attr_accessor :end
2846
+
2847
+ # The reference sequence name, for example `chr1`,
2848
+ # `1`, or `chrX`.
2849
+ # Corresponds to the JSON property `referenceName`
2850
+ # @return [String]
2851
+ attr_accessor :reference_name
2852
+
2853
+ def initialize(**args)
2854
+ update!(**args)
2855
+ end
2856
+
2857
+ # Update properties of this object
2858
+ def update!(**args)
2859
+ @start = args[:start] if args.key?(:start)
2860
+ @end = args[:end] if args.key?(:end)
2861
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2862
+ end
2863
+ end
2864
+
2865
+ # A variant set is a collection of call sets and variants. It contains summary
2866
+ # statistics of those contents. A variant set belongs to a dataset.
2867
+ # For more genomics resource definitions, see [Fundamentals of Google
2868
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
2869
+ class VariantSet
2870
+ include Google::Apis::Core::Hashable
2871
+
2872
+ # The metadata associated with this variant set.
2873
+ # Corresponds to the JSON property `metadata`
2874
+ # @return [Array<Google::Apis::GenomicsV1::VariantSetMetadata>]
2875
+ attr_accessor :metadata
2876
+
2877
+ # A list of all references used by the variants in a variant set
2878
+ # with associated coordinate upper bounds for each one.
2879
+ # Corresponds to the JSON property `referenceBounds`
2880
+ # @return [Array<Google::Apis::GenomicsV1::ReferenceBound>]
2881
+ attr_accessor :reference_bounds
2882
+
2883
+ # The server-generated variant set ID, unique across all variant sets.
2884
+ # Corresponds to the JSON property `id`
2885
+ # @return [String]
2886
+ attr_accessor :id
2887
+
2888
+ # A textual description of this variant set.
2889
+ # Corresponds to the JSON property `description`
2890
+ # @return [String]
2891
+ attr_accessor :description
2892
+
2893
+ # The dataset to which this variant set belongs.
2894
+ # Corresponds to the JSON property `datasetId`
2895
+ # @return [String]
2896
+ attr_accessor :dataset_id
2897
+
2898
+ # User-specified, mutable name.
2899
+ # Corresponds to the JSON property `name`
2900
+ # @return [String]
2901
+ attr_accessor :name
2902
+
2903
+ # The reference set to which the variant set is mapped. The reference set
2904
+ # describes the alignment provenance of the variant set, while the
2905
+ # `referenceBounds` describe the shape of the actual variant data. The
2906
+ # reference set's reference names are a superset of those found in the
2907
+ # `referenceBounds`.
2908
+ # For example, given a variant set that is mapped to the GRCh38 reference set
2909
+ # and contains a single variant on reference 'X', `referenceBounds` would
2910
+ # contain only an entry for 'X', while the associated reference set
2911
+ # enumerates all possible references: '1', '2', 'X', 'Y', 'MT', etc.
2912
+ # Corresponds to the JSON property `referenceSetId`
2913
+ # @return [String]
2914
+ attr_accessor :reference_set_id
2915
+
2916
+ def initialize(**args)
2917
+ update!(**args)
2918
+ end
2919
+
2920
+ # Update properties of this object
2921
+ def update!(**args)
2922
+ @metadata = args[:metadata] if args.key?(:metadata)
2923
+ @reference_bounds = args[:reference_bounds] if args.key?(:reference_bounds)
2924
+ @id = args[:id] if args.key?(:id)
2925
+ @description = args[:description] if args.key?(:description)
2926
+ @dataset_id = args[:dataset_id] if args.key?(:dataset_id)
2927
+ @name = args[:name] if args.key?(:name)
2928
+ @reference_set_id = args[:reference_set_id] if args.key?(:reference_set_id)
2929
+ end
2930
+ end
2931
+
2932
+ #
2933
+ class BatchCreateAnnotationsResponse
2934
+ include Google::Apis::Core::Hashable
2935
+
2936
+ # The resulting per-annotation entries, ordered consistently with the
2937
+ # original request.
2938
+ # Corresponds to the JSON property `entries`
2939
+ # @return [Array<Google::Apis::GenomicsV1::Entry>]
2940
+ attr_accessor :entries
2941
+
2942
+ def initialize(**args)
2943
+ update!(**args)
2944
+ end
2945
+
2946
+ # Update properties of this object
2947
+ def update!(**args)
2948
+ @entries = args[:entries] if args.key?(:entries)
2949
+ end
2950
+ end
2951
+
2952
+ # ReferenceBound records an upper bound for the starting coordinate of
2953
+ # variants in a particular reference.
2954
+ class ReferenceBound
2955
+ include Google::Apis::Core::Hashable
2956
+
2957
+ # An upper bound (inclusive) on the starting coordinate of any
2958
+ # variant in the reference sequence.
2959
+ # Corresponds to the JSON property `upperBound`
2960
+ # @return [String]
2961
+ attr_accessor :upper_bound
2962
+
2963
+ # The name of the reference associated with this reference bound.
2964
+ # Corresponds to the JSON property `referenceName`
2965
+ # @return [String]
2966
+ attr_accessor :reference_name
2967
+
2968
+ def initialize(**args)
2969
+ update!(**args)
2970
+ end
2971
+
2972
+ # Update properties of this object
2973
+ def update!(**args)
2974
+ @upper_bound = args[:upper_bound] if args.key?(:upper_bound)
2975
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
2976
+ end
2977
+ end
2978
+
2979
+ # The call set search response.
2980
+ class SearchCallSetsResponse
2981
+ include Google::Apis::Core::Hashable
2982
+
2983
+ # The continuation token, which is used to page through large result sets.
2984
+ # Provide this value in a subsequent request to return the next page of
2985
+ # results. This field will be empty if there aren't any additional results.
2986
+ # Corresponds to the JSON property `nextPageToken`
2987
+ # @return [String]
2988
+ attr_accessor :next_page_token
2989
+
2990
+ # The list of matching call sets.
2991
+ # Corresponds to the JSON property `callSets`
2992
+ # @return [Array<Google::Apis::GenomicsV1::CallSet>]
2993
+ attr_accessor :call_sets
2994
+
2995
+ def initialize(**args)
2996
+ update!(**args)
2997
+ end
2998
+
2999
+ # Update properties of this object
3000
+ def update!(**args)
3001
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3002
+ @call_sets = args[:call_sets] if args.key?(:call_sets)
3003
+ end
3004
+ end
3005
+
3006
+ # A variant represents a change in DNA sequence relative to a reference
3007
+ # sequence. For example, a variant could represent a SNP or an insertion.
3008
+ # Variants belong to a variant set.
3009
+ # For more genomics resource definitions, see [Fundamentals of Google
3010
+ # Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
3011
+ # Each of the calls on a variant represent a determination of genotype with
3012
+ # respect to that variant. For example, a call might assign probability of 0.32
3013
+ # to the occurrence of a SNP named rs1234 in a sample named NA12345. A call
3014
+ # belongs to a call set, which contains related calls typically from one
3015
+ # sample.
3016
+ class Variant
3017
+ include Google::Apis::Core::Hashable
3018
+
3019
+ # A measure of how likely this variant is to be real.
3020
+ # A higher value is better.
3021
+ # Corresponds to the JSON property `quality`
3022
+ # @return [Float]
3023
+ attr_accessor :quality
3024
+
3025
+ # The server-generated variant ID, unique across all variants.
3026
+ # Corresponds to the JSON property `id`
3027
+ # @return [String]
3028
+ attr_accessor :id
3029
+
3030
+ # The ID of the variant set this variant belongs to.
3031
+ # Corresponds to the JSON property `variantSetId`
3032
+ # @return [String]
3033
+ attr_accessor :variant_set_id
3034
+
3035
+ # The reference on which this variant occurs.
3036
+ # (such as `chr20` or `X`)
3037
+ # Corresponds to the JSON property `referenceName`
3038
+ # @return [String]
3039
+ attr_accessor :reference_name
3040
+
3041
+ # A map of additional variant information. This must be of the form
3042
+ # map<string, string[]> (string key mapping to a list of string values).
3043
+ # Corresponds to the JSON property `info`
3044
+ # @return [Hash<String,Array<Object>>]
3045
+ attr_accessor :info
3046
+
3047
+ # The reference bases for this variant. They start at the given
3048
+ # position.
3049
+ # Corresponds to the JSON property `referenceBases`
3050
+ # @return [String]
3051
+ attr_accessor :reference_bases
3052
+
3053
+ # Names for the variant, for example a RefSNP ID.
3054
+ # Corresponds to the JSON property `names`
3055
+ # @return [Array<String>]
3056
+ attr_accessor :names
3057
+
3058
+ # The bases that appear instead of the reference bases.
3059
+ # Corresponds to the JSON property `alternateBases`
3060
+ # @return [Array<String>]
3061
+ attr_accessor :alternate_bases
3062
+
3063
+ # The end position (0-based) of this variant. This corresponds to the first
3064
+ # base after the last base in the reference allele. So, the length of
3065
+ # the reference allele is (end - start). This is useful for variants
3066
+ # that don't explicitly give alternate bases, for example large deletions.
3067
+ # Corresponds to the JSON property `end`
3068
+ # @return [String]
3069
+ attr_accessor :end
3070
+
3071
+ # A list of filters (normally quality filters) this variant has failed.
3072
+ # `PASS` indicates this variant has passed all filters.
3073
+ # Corresponds to the JSON property `filter`
3074
+ # @return [Array<String>]
3075
+ attr_accessor :filter
3076
+
3077
+ # The variant calls for this particular variant. Each one represents the
3078
+ # determination of genotype with respect to this variant.
3079
+ # Corresponds to the JSON property `calls`
3080
+ # @return [Array<Google::Apis::GenomicsV1::VariantCall>]
3081
+ attr_accessor :calls
3082
+
3083
+ # The date this variant was created, in milliseconds from the epoch.
3084
+ # Corresponds to the JSON property `created`
3085
+ # @return [String]
3086
+ attr_accessor :created
3087
+
3088
+ # The position at which this variant occurs (0-based).
3089
+ # This corresponds to the first base of the string of reference bases.
3090
+ # Corresponds to the JSON property `start`
3091
+ # @return [String]
3092
+ attr_accessor :start
3093
+
3094
+ def initialize(**args)
3095
+ update!(**args)
3096
+ end
3097
+
3098
+ # Update properties of this object
3099
+ def update!(**args)
3100
+ @quality = args[:quality] if args.key?(:quality)
3101
+ @id = args[:id] if args.key?(:id)
3102
+ @variant_set_id = args[:variant_set_id] if args.key?(:variant_set_id)
3103
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
3104
+ @info = args[:info] if args.key?(:info)
3105
+ @reference_bases = args[:reference_bases] if args.key?(:reference_bases)
3106
+ @names = args[:names] if args.key?(:names)
3107
+ @alternate_bases = args[:alternate_bases] if args.key?(:alternate_bases)
3108
+ @end = args[:end] if args.key?(:end)
3109
+ @filter = args[:filter] if args.key?(:filter)
3110
+ @calls = args[:calls] if args.key?(:calls)
3111
+ @created = args[:created] if args.key?(:created)
3112
+ @start = args[:start] if args.key?(:start)
3113
+ end
3114
+ end
3115
+
3116
+ # The response message for Operations.ListOperations.
3117
+ class ListOperationsResponse
3118
+ include Google::Apis::Core::Hashable
3119
+
3120
+ # The standard List next-page token.
3121
+ # Corresponds to the JSON property `nextPageToken`
3122
+ # @return [String]
3123
+ attr_accessor :next_page_token
3124
+
3125
+ # A list of operations that matches the specified filter in the request.
3126
+ # Corresponds to the JSON property `operations`
3127
+ # @return [Array<Google::Apis::GenomicsV1::Operation>]
3128
+ attr_accessor :operations
3129
+
3130
+ def initialize(**args)
3131
+ update!(**args)
3132
+ end
3133
+
3134
+ # Update properties of this object
3135
+ def update!(**args)
3136
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3137
+ @operations = args[:operations] if args.key?(:operations)
3138
+ end
3139
+ end
3140
+
3141
+ # Metadata describing an Operation.
3142
+ class OperationMetadata
3143
+ include Google::Apis::Core::Hashable
3144
+
3145
+ # Optional event messages that were generated during the job's execution.
3146
+ # This also contains any warnings that were generated during import
3147
+ # or export.
3148
+ # Corresponds to the JSON property `events`
3149
+ # @return [Array<Google::Apis::GenomicsV1::OperationEvent>]
3150
+ attr_accessor :events
3151
+
3152
+ # The time at which the job stopped running.
3153
+ # Corresponds to the JSON property `endTime`
3154
+ # @return [String]
3155
+ attr_accessor :end_time
3156
+
3157
+ # The time at which the job began to run.
3158
+ # Corresponds to the JSON property `startTime`
3159
+ # @return [String]
3160
+ attr_accessor :start_time
3161
+
3162
+ # The original request that started the operation. Note that this will be in
3163
+ # current version of the API. If the operation was started with v1beta2 API
3164
+ # and a GetOperation is performed on v1 API, a v1 request will be returned.
3165
+ # Corresponds to the JSON property `request`
3166
+ # @return [Hash<String,Object>]
3167
+ attr_accessor :request
3168
+
3169
+ # Runtime metadata on this Operation.
3170
+ # Corresponds to the JSON property `runtimeMetadata`
3171
+ # @return [Hash<String,Object>]
3172
+ attr_accessor :runtime_metadata
3173
+
3174
+ # The time at which the job was submitted to the Genomics service.
3175
+ # Corresponds to the JSON property `createTime`
3176
+ # @return [String]
3177
+ attr_accessor :create_time
3178
+
3179
+ # Optionally provided by the caller when submitting the request that creates
3180
+ # the operation.
3181
+ # Corresponds to the JSON property `labels`
3182
+ # @return [Hash<String,String>]
3183
+ attr_accessor :labels
3184
+
3185
+ # The Google Cloud Project in which the job is scoped.
3186
+ # Corresponds to the JSON property `projectId`
3187
+ # @return [String]
3188
+ attr_accessor :project_id
3189
+
3190
+ # This field is deprecated. Use `labels` instead. Optionally provided by the
3191
+ # caller when submitting the request that creates the operation.
3192
+ # Corresponds to the JSON property `clientId`
3193
+ # @return [String]
3194
+ attr_accessor :client_id
3195
+
3196
+ def initialize(**args)
3197
+ update!(**args)
3198
+ end
3199
+
3200
+ # Update properties of this object
3201
+ def update!(**args)
3202
+ @events = args[:events] if args.key?(:events)
3203
+ @end_time = args[:end_time] if args.key?(:end_time)
3204
+ @start_time = args[:start_time] if args.key?(:start_time)
3205
+ @request = args[:request] if args.key?(:request)
3206
+ @runtime_metadata = args[:runtime_metadata] if args.key?(:runtime_metadata)
3207
+ @create_time = args[:create_time] if args.key?(:create_time)
3208
+ @labels = args[:labels] if args.key?(:labels)
3209
+ @project_id = args[:project_id] if args.key?(:project_id)
3210
+ @client_id = args[:client_id] if args.key?(:client_id)
3211
+ end
3212
+ end
3213
+
3214
+ # The variant search request.
3215
+ class SearchVariantsRequest
3216
+ include Google::Apis::Core::Hashable
3217
+
3218
+ # The maximum number of variants to return in a single page. If unspecified,
3219
+ # defaults to 5000. The maximum value is 10000.
3220
+ # Corresponds to the JSON property `pageSize`
3221
+ # @return [Fixnum]
3222
+ attr_accessor :page_size
3223
+
3224
+ # Only return variant calls which belong to call sets with these ids.
3225
+ # Leaving this blank returns all variant calls. If a variant has no
3226
+ # calls belonging to any of these call sets, it won't be returned at all.
3227
+ # Corresponds to the JSON property `callSetIds`
3228
+ # @return [Array<String>]
3229
+ attr_accessor :call_set_ids
3230
+
3231
+ # Only return variants which have exactly this name.
3232
+ # Corresponds to the JSON property `variantName`
3233
+ # @return [String]
3234
+ attr_accessor :variant_name
3235
+
3236
+ # The beginning of the window (0-based, inclusive) for which
3237
+ # overlapping variants should be returned. If unspecified, defaults to 0.
3238
+ # Corresponds to the JSON property `start`
3239
+ # @return [String]
3240
+ attr_accessor :start
3241
+
3242
+ # Required. Only return variants in this reference sequence.
3243
+ # Corresponds to the JSON property `referenceName`
3244
+ # @return [String]
3245
+ attr_accessor :reference_name
3246
+
3247
+ # At most one variant set ID must be provided. Only variants from this
3248
+ # variant set will be returned. If omitted, a call set id must be included in
3249
+ # the request.
3250
+ # Corresponds to the JSON property `variantSetIds`
3251
+ # @return [Array<String>]
3252
+ attr_accessor :variant_set_ids
3253
+
3254
+ # The end of the window, 0-based exclusive. If unspecified or 0, defaults to
3255
+ # the length of the reference.
3256
+ # Corresponds to the JSON property `end`
3257
+ # @return [String]
3258
+ attr_accessor :end
3259
+
3260
+ # The continuation token, which is used to page through large result sets.
3261
+ # To get the next page of results, set this parameter to the value of
3262
+ # `nextPageToken` from the previous response.
3263
+ # Corresponds to the JSON property `pageToken`
3264
+ # @return [String]
3265
+ attr_accessor :page_token
3266
+
3267
+ # The maximum number of calls to return in a single page. Note that this
3268
+ # limit may be exceeded in the event that a matching variant contains more
3269
+ # calls than the requested maximum. If unspecified, defaults to 5000. The
3270
+ # maximum value is 10000.
3271
+ # Corresponds to the JSON property `maxCalls`
3272
+ # @return [Fixnum]
3273
+ attr_accessor :max_calls
3274
+
3275
+ def initialize(**args)
3276
+ update!(**args)
3277
+ end
3278
+
3279
+ # Update properties of this object
3280
+ def update!(**args)
3281
+ @page_size = args[:page_size] if args.key?(:page_size)
3282
+ @call_set_ids = args[:call_set_ids] if args.key?(:call_set_ids)
3283
+ @variant_name = args[:variant_name] if args.key?(:variant_name)
3284
+ @start = args[:start] if args.key?(:start)
3285
+ @reference_name = args[:reference_name] if args.key?(:reference_name)
3286
+ @variant_set_ids = args[:variant_set_ids] if args.key?(:variant_set_ids)
3287
+ @end = args[:end] if args.key?(:end)
3288
+ @page_token = args[:page_token] if args.key?(:page_token)
3289
+ @max_calls = args[:max_calls] if args.key?(:max_calls)
3290
+ end
3291
+ end
3292
+
3293
+ # The read group set search request.
3294
+ class SearchReadGroupSetsRequest
3295
+ include Google::Apis::Core::Hashable
3296
+
3297
+ # Restricts this query to read group sets within the given datasets. At least
3298
+ # one ID must be provided.
3299
+ # Corresponds to the JSON property `datasetIds`
3300
+ # @return [Array<String>]
3301
+ attr_accessor :dataset_ids
3302
+
3303
+ # Only return read group sets for which a substring of the name matches this
3304
+ # string.
3305
+ # Corresponds to the JSON property `name`
3306
+ # @return [String]
3307
+ attr_accessor :name
3308
+
3309
+ # The continuation token, which is used to page through large result sets.
3310
+ # To get the next page of results, set this parameter to the value of
3311
+ # `nextPageToken` from the previous response.
3312
+ # Corresponds to the JSON property `pageToken`
3313
+ # @return [String]
3314
+ attr_accessor :page_token
3315
+
3316
+ # The maximum number of results to return in a single page. If unspecified,
3317
+ # defaults to 256. The maximum value is 1024.
3318
+ # Corresponds to the JSON property `pageSize`
3319
+ # @return [Fixnum]
3320
+ attr_accessor :page_size
3321
+
3322
+ def initialize(**args)
3323
+ update!(**args)
3324
+ end
3325
+
3326
+ # Update properties of this object
3327
+ def update!(**args)
3328
+ @dataset_ids = args[:dataset_ids] if args.key?(:dataset_ids)
3329
+ @name = args[:name] if args.key?(:name)
3330
+ @page_token = args[:page_token] if args.key?(:page_token)
3331
+ @page_size = args[:page_size] if args.key?(:page_size)
3332
+ end
3333
+ end
3334
+
3335
+ #
3336
+ class SearchAnnotationsResponse
3337
+ include Google::Apis::Core::Hashable
3338
+
3339
+ # The continuation token, which is used to page through large result sets.
3340
+ # Provide this value in a subsequent request to return the next page of
3341
+ # results. This field will be empty if there aren't any additional results.
3342
+ # Corresponds to the JSON property `nextPageToken`
3343
+ # @return [String]
3344
+ attr_accessor :next_page_token
3345
+
3346
+ # The matching annotations.
3347
+ # Corresponds to the JSON property `annotations`
3348
+ # @return [Array<Google::Apis::GenomicsV1::Annotation>]
3349
+ attr_accessor :annotations
3350
+
3351
+ def initialize(**args)
3352
+ update!(**args)
3353
+ end
3354
+
3355
+ # Update properties of this object
3356
+ def update!(**args)
3357
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3358
+ @annotations = args[:annotations] if args.key?(:annotations)
3359
+ end
3360
+ end
3361
+
3362
+ #
3363
+ class ClinicalCondition
3364
+ include Google::Apis::Core::Hashable
3365
+
3366
+ # The OMIM id for this condition.
3367
+ # Search for these IDs at http://omim.org/
3368
+ # Corresponds to the JSON property `omimId`
3369
+ # @return [String]
3370
+ attr_accessor :omim_id
3371
+
3372
+ # The set of external IDs for this condition.
3373
+ # Corresponds to the JSON property `externalIds`
3374
+ # @return [Array<Google::Apis::GenomicsV1::ExternalId>]
3375
+ attr_accessor :external_ids
3376
+
3377
+ # The MedGen concept id associated with this gene.
3378
+ # Search for these IDs at http://www.ncbi.nlm.nih.gov/medgen/
3379
+ # Corresponds to the JSON property `conceptId`
3380
+ # @return [String]
3381
+ attr_accessor :concept_id
3382
+
3383
+ # A set of names for the condition.
3384
+ # Corresponds to the JSON property `names`
3385
+ # @return [Array<String>]
3386
+ attr_accessor :names
3387
+
3388
+ def initialize(**args)
3389
+ update!(**args)
3390
+ end
3391
+
3392
+ # Update properties of this object
3393
+ def update!(**args)
3394
+ @omim_id = args[:omim_id] if args.key?(:omim_id)
3395
+ @external_ids = args[:external_ids] if args.key?(:external_ids)
3396
+ @concept_id = args[:concept_id] if args.key?(:concept_id)
3397
+ @names = args[:names] if args.key?(:names)
3398
+ end
3399
+ end
3400
+
3401
+ # The read search response.
3402
+ class SearchReadsResponse
3403
+ include Google::Apis::Core::Hashable
3404
+
3405
+ # The continuation token, which is used to page through large result sets.
3406
+ # Provide this value in a subsequent request to return the next page of
3407
+ # results. This field will be empty if there aren't any additional results.
3408
+ # Corresponds to the JSON property `nextPageToken`
3409
+ # @return [String]
3410
+ attr_accessor :next_page_token
3411
+
3412
+ # The list of matching alignments sorted by mapped genomic coordinate,
3413
+ # if any, ascending in position within the same reference. Unmapped reads,
3414
+ # which have no position, are returned contiguously and are sorted in
3415
+ # ascending lexicographic order by fragment name.
3416
+ # Corresponds to the JSON property `alignments`
3417
+ # @return [Array<Google::Apis::GenomicsV1::Read>]
3418
+ attr_accessor :alignments
3419
+
3420
+ def initialize(**args)
3421
+ update!(**args)
3422
+ end
3423
+
3424
+ # Update properties of this object
3425
+ def update!(**args)
3426
+ @next_page_token = args[:next_page_token] if args.key?(:next_page_token)
3427
+ @alignments = args[:alignments] if args.key?(:alignments)
3428
+ end
3429
+ end
3430
+
3431
+ #
3432
+ class Program
3433
+ include Google::Apis::Core::Hashable
3434
+
3435
+ # The display name of the program. This is typically the colloquial name of
3436
+ # the tool used, for example 'bwa' or 'picard'.
3437
+ # Corresponds to the JSON property `name`
3438
+ # @return [String]
3439
+ attr_accessor :name
3440
+
3441
+ # The command line used to run this program.
3442
+ # Corresponds to the JSON property `commandLine`
3443
+ # @return [String]
3444
+ attr_accessor :command_line
3445
+
3446
+ # The ID of the program run before this one.
3447
+ # Corresponds to the JSON property `prevProgramId`
3448
+ # @return [String]
3449
+ attr_accessor :prev_program_id
3450
+
3451
+ # The user specified locally unique ID of the program. Used along with
3452
+ # `prevProgramId` to define an ordering between programs.
3453
+ # Corresponds to the JSON property `id`
3454
+ # @return [String]
3455
+ attr_accessor :id
3456
+
3457
+ # The version of the program run.
3458
+ # Corresponds to the JSON property `version`
3459
+ # @return [String]
3460
+ attr_accessor :version
3461
+
3462
+ def initialize(**args)
3463
+ update!(**args)
3464
+ end
3465
+
3466
+ # Update properties of this object
3467
+ def update!(**args)
3468
+ @name = args[:name] if args.key?(:name)
3469
+ @command_line = args[:command_line] if args.key?(:command_line)
3470
+ @prev_program_id = args[:prev_program_id] if args.key?(:prev_program_id)
3471
+ @id = args[:id] if args.key?(:id)
3472
+ @version = args[:version] if args.key?(:version)
3473
+ end
3474
+ end
3475
+ end
3476
+ end
3477
+ end