lederhosen 1.2.2 → 1.2.4
Sign up to get free protection for your applications and to get access to all the features.
- data/lederhosen.gemspec +1 -1
- data/lib/lederhosen/tasks/get_reps.rb +3 -4
- data/lib/lederhosen/version.rb +1 -1
- metadata +2 -2
data/lederhosen.gemspec
CHANGED
@@ -15,17 +15,16 @@ module Lederhosen
|
|
15
15
|
|
16
16
|
taxa = Set.new
|
17
17
|
|
18
|
-
ohai "getting representative database sequences from #{database} using #{inputs}
|
18
|
+
ohai "getting representative database sequences from #{database} using #{inputs.size} cluster file(s) and saving to #{output}"
|
19
19
|
|
20
20
|
# parse uc file, get list of taxa we need to get
|
21
21
|
# full sequences for from the database
|
22
|
-
|
23
|
-
pbar = ProgressBar.new 'reading uc(s)', total_bytes
|
22
|
+
pbar = ProgressBar.new 'reading uc(s)', inputs.size
|
24
23
|
|
25
24
|
inputs.each do |input|
|
26
25
|
File.open(input) do |handle|
|
27
26
|
handle.each do |line|
|
28
|
-
pbar.inc
|
27
|
+
pbar.inc
|
29
28
|
header = parse_usearch_line(line.strip)
|
30
29
|
taxa << header[:original] rescue nil
|
31
30
|
end
|
data/lib/lederhosen/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: lederhosen
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.2.
|
4
|
+
version: 1.2.4
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -159,7 +159,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
159
159
|
version: '0'
|
160
160
|
segments:
|
161
161
|
- 0
|
162
|
-
hash:
|
162
|
+
hash: -2791124555855292647
|
163
163
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
164
164
|
none: false
|
165
165
|
requirements:
|