lederhosen 1.2.2 → 1.2.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/lederhosen.gemspec +1 -1
- data/lib/lederhosen/tasks/get_reps.rb +3 -4
- data/lib/lederhosen/version.rb +1 -1
- metadata +2 -2
data/lederhosen.gemspec
CHANGED
@@ -15,17 +15,16 @@ module Lederhosen
|
|
15
15
|
|
16
16
|
taxa = Set.new
|
17
17
|
|
18
|
-
ohai "getting representative database sequences from #{database} using #{inputs}
|
18
|
+
ohai "getting representative database sequences from #{database} using #{inputs.size} cluster file(s) and saving to #{output}"
|
19
19
|
|
20
20
|
# parse uc file, get list of taxa we need to get
|
21
21
|
# full sequences for from the database
|
22
|
-
|
23
|
-
pbar = ProgressBar.new 'reading uc(s)', total_bytes
|
22
|
+
pbar = ProgressBar.new 'reading uc(s)', inputs.size
|
24
23
|
|
25
24
|
inputs.each do |input|
|
26
25
|
File.open(input) do |handle|
|
27
26
|
handle.each do |line|
|
28
|
-
pbar.inc
|
27
|
+
pbar.inc
|
29
28
|
header = parse_usearch_line(line.strip)
|
30
29
|
taxa << header[:original] rescue nil
|
31
30
|
end
|
data/lib/lederhosen/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: lederhosen
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.2.
|
4
|
+
version: 1.2.4
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
|
@@ -159,7 +159,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
|
|
159
159
|
version: '0'
|
160
160
|
segments:
|
161
161
|
- 0
|
162
|
-
hash:
|
162
|
+
hash: -2791124555855292647
|
163
163
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
164
164
|
none: false
|
165
165
|
requirements:
|