lederhosen 1.2.1 → 1.2.2
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- data/lederhosen.gemspec +1 -1
- data/lib/lederhosen/tasks/cluster.rb +3 -3
- data/lib/lederhosen/tasks/get_reps.rb +2 -2
- data/lib/lederhosen/tasks/join_otu_tables.rb +1 -1
- data/lib/lederhosen/tasks/otu_filter.rb +2 -2
- data/lib/lederhosen/tasks/split_fasta.rb +1 -1
- data/lib/lederhosen/version.rb +1 -1
- metadata +2 -2
data/lederhosen.gemspec
CHANGED
@@ -12,11 +12,11 @@ module Lederhosen
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|
12
12
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method_option :strand, :type => :string, :default => 'plus'
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13
13
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14
14
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def cluster
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15
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-
input = options[:input]
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16
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-
database = options[:database]
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15
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+
input = File.expand_path(options[:input])
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16
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+
database = File.expand_path(options[:database])
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17
17
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threads = options[:threads]
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18
18
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identity = options[:identity]
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19
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-
output = options[:output]
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19
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+
output = File.expand_path(options[:output])
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20
20
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strand = options[:strand]
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21
21
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22
22
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ohai "clustering #{input} to #{database} and saving to #{output}"
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@@ -11,8 +11,8 @@ module Lederhosen
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11
11
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method_option :samples, :type => :numeric, :required => true
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12
12
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|
13
13
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def otu_filter
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14
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-
input = options[:input]
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15
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-
output = options[:output]
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14
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+
input = File.expand_path(options[:input])
|
15
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+
output = File.expand_path(options[:output])
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16
16
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reads = options[:reads]
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17
17
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min_samples = options[:samples]
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18
18
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data/lib/lederhosen/version.rb
CHANGED
metadata
CHANGED
@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: lederhosen
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 1.2.
|
4
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+
version: 1.2.2
|
5
5
|
prerelease:
|
6
6
|
platform: ruby
|
7
7
|
authors:
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@@ -159,7 +159,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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|
159
159
|
version: '0'
|
160
160
|
segments:
|
161
161
|
- 0
|
162
|
-
hash:
|
162
|
+
hash: 3469551322698275047
|
163
163
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
164
164
|
none: false
|
165
165
|
requirements:
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