lederhosen 1.2.1 → 1.2.2

data/lederhosen.gemspec

@@ -5,7 +5,7 @@
 
 Gem::Specification.new do |s|
   s.name = "lederhosen"
-  s.version = "1.2.1"
+  s.version = "1.2.2"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Austin G. Davis-Richardson"]

data/lib/lederhosen/tasks/cluster.rb

@@ -12,11 +12,11 @@ module Lederhosen
     method_option :strand,   :type => :string,  :default => 'plus'
 
     def cluster
-      input    = options[:input]
-      database = options[:database]
+      input    = File.expand_path(options[:input])
+      database = File.expand_path(options[:database])
       threads  = options[:threads]
       identity = options[:identity]
-      output   = options[:output]
+      output   = File.expand_path(options[:output])
       strand   = options[:strand]
 
       ohai "clustering #{input} to #{database} and saving to #{output}"

data/lib/lederhosen/tasks/get_reps.rb

@@ -10,8 +10,8 @@ module Lederhosen
 
     def get_reps
       inputs   = Dir[options[:input]]
-      database = options[:database]
-      output   = options[:output]
+      database = File.expand_path(options[:database])
+      output   = File.expand_path(options[:output])
 
       taxa = Set.new
 

data/lib/lederhosen/tasks/join_otu_tables.rb

@@ -12,7 +12,7 @@ module Lederhosen
     def join_otu_tables
 
       input = Dir[options[:input]]
-      output = options[:output]
+      output = File.expand_path(options[:output])
 
       ohai "combining #{input.size} file(s) and saving to #{output}"
 

data/lib/lederhosen/tasks/otu_filter.rb

@@ -11,8 +11,8 @@ module Lederhosen
     method_option :samples, :type => :numeric, :required => true
 
     def otu_filter
-      input       = options[:input]
-      output      = options[:output]
+      input       = File.expand_path(options[:input])
+      output      = File.expand_path(options[:output])
       reads       = options[:reads]
       min_samples = options[:samples]
 

data/lib/lederhosen/tasks/split_fasta.rb

@@ -16,7 +16,7 @@ module Lederhosen
     method_option :gzip,    :type => :boolean, :default  => false
 
     def split_fasta
-      input   = options[:input]
+      input   = File.expand_path(options[:input])
       out_dir = options[:out_dir]
       n       = options[:n].to_i
       gzip    = options[:gzip]

data/lib/lederhosen/version.rb

@@ -3,7 +3,7 @@ module Lederhosen
     MAJOR = 1
     MINOR = 2
     CODENAME = 'Regenmantel' # changes for minor versions
-    PATCH = 1
+    PATCH = 2
 
     STRING = [MAJOR, MINOR, PATCH].join('.')
   end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: lederhosen
 version: !ruby/object:Gem::Version
-  version: 1.2.1
+  version: 1.2.2
   prerelease: 
 platform: ruby
 authors:
@@ -159,7 +159,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: '0'
       segments:
       - 0
-      hash: -2571588270597711944
+      hash: 3469551322698275047
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: