lederhosen 1.8.2 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/Gemfile +1 -1
- data/lederhosen.gemspec +7 -3
- data/lib/lederhosen/no_tasks.rb +18 -18
- data/lib/lederhosen/tasks/count_taxonomies.rb +83 -0
- data/lib/lederhosen/tasks/get_reps.rb +3 -4
- data/lib/lederhosen/tasks/make_udb.rb +2 -2
- data/lib/lederhosen/tasks/otu_filter.rb +8 -1
- data/lib/lederhosen/tasks/otu_table.rb +33 -70
- data/lib/lederhosen/tasks/separate_unclassified.rb +65 -0
- data/lib/lederhosen/uc_parser.rb +88 -0
- data/lib/lederhosen/version.rb +4 -4
- data/readme.md +107 -11
- data/spec/cli_spec.rb +62 -10
- data/spec/data/test.uc +9 -684
- data/spec/data/trimmed/ILT_L_9_B_001.fasta +100 -1596
- data/spec/no_tasks_spec.rb +1 -1
- data/spec/uc_parser_spec.rb +0 -0
- metadata +7 -3
data/spec/no_tasks_spec.rb
CHANGED
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@@ -41,7 +41,7 @@ describe 'no_tasks' do
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end
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end
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-
it "#parse_taxonomy_greengenes should parse qiime taxonomy #{level}" do
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44
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+
it "#parse_taxonomy_greengenes should parse qiime taxonomy (#{level})" do
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qiime_taxonomies.each do |qiime_taxonomy|
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taxonomy = lederhosen.parse_taxonomy_qiime(qiime_taxonomy)
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taxonomy[level].should == level
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File without changes
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: lederhosen
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version: !ruby/object:Gem::Version
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-
version:
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4
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+
version: 2.0.0
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prerelease:
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platform: ruby
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authors:
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2013-01-
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12
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+
date: 2013-01-24 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: dna
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@@ -125,13 +125,16 @@ files:
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- lib/lederhosen/cli.rb
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- lib/lederhosen/no_tasks.rb
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- lib/lederhosen/tasks/cluster.rb
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128
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+
- lib/lederhosen/tasks/count_taxonomies.rb
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- lib/lederhosen/tasks/get_reps.rb
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- lib/lederhosen/tasks/join_otu_tables.rb
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- lib/lederhosen/tasks/make_udb.rb
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- lib/lederhosen/tasks/otu_filter.rb
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- lib/lederhosen/tasks/otu_table.rb
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+
- lib/lederhosen/tasks/separate_unclassified.rb
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- lib/lederhosen/tasks/split_fasta.rb
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- lib/lederhosen/tasks/version.rb
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137
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+
- lib/lederhosen/uc_parser.rb
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- lib/lederhosen/version.rb
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- readme.md
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- scripts/illumina_pipeline/.gitignore
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@@ -145,6 +148,7 @@ files:
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- spec/data/trimmed/ILT_L_9_B_001.fasta
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- spec/no_tasks_spec.rb
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- spec/spec_helper.rb
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+
- spec/uc_parser_spec.rb
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homepage: http://audy.github.com/lederhosen
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licenses:
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- MIT
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@@ -160,7 +164,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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-
hash:
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+
hash: -4054085501911268272
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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