lederhosen 1.8.1 → 1.8.2

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Files changed (14) hide show
  1. data/lederhosen.gemspec +3 -9
  2. data/lib/lederhosen/tasks/otu_table.rb +3 -0
  3. data/lib/lederhosen/version.rb +1 -1
  4. data/spec/cli_spec.rb +5 -15
  5. data/spec/data/trimmed/ILT_L_9_B_001.fasta +1596 -0
  6. data/spec/no_tasks_spec.rb +19 -24
  7. metadata +3 -9
  8. data/spec/data/ILT_L_9_B_001_1.txt.gz +0 -0
  9. data/spec/data/ILT_L_9_B_001_3.txt.gz +0 -0
  10. data/spec/data/ILT_L_9_B_002_1.txt.gz +0 -0
  11. data/spec/data/ILT_L_9_B_002_3.txt.gz +0 -0
  12. data/spec/data/example.fastq +0 -400
  13. data/spec/data/trimmed_sizes.txt +0 -100
  14. data/spec/trimmer_spec.rb +0 -85
data/spec/no_tasks_spec.rb CHANGED
@@ -2,8 +2,8 @@ require 'spec_helper'
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  describe 'no_tasks' do
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- let(:greengenes_taxonomies) { ['124 U55236.1 Methanobrevibacter thaueri str. CW k__Archaea; p__Euryarchaeota; c__Methanobacteria; o__Methanobacteriales; f__Methanobacteriaceae; g__Methanobrevibacter; Unclassified; otu_127']}
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- let(:qiime_taxonomies) { [ 'k__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacteriales;f__Enterobacteriaceae;g__Rahnella;s__' ]}
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+ let(:greengenes_taxonomies) { ['124 U55236.1 Methanobrevibacter thaueri str. CW k__domain; p__phylum; c__class; o__order; f__family; g__genus; species; otu_127']}
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+ let(:qiime_taxonomies) { [ 'k__domain;p__phylum;c__class;o__order;f__family;g__genus;s__species' ]}
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  let(:taxcollector_taxonomies) { ['[0]domain;[1]phylum;[2]class;[3]order;[4]family;[5]genus;[6]species;[7]strain;[8]Genus_species_strain_id'] }
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  let(:lederhosen) { Lederhosen::CLI.new }
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@@ -25,40 +25,35 @@ describe 'no_tasks' do
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  lederhosen.detect_taxonomy_format('this is not a taxonomic description').should raise_error
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  end
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- %w{domain phylum class order family genus species strain}.each do |level|
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+ %w{domain phylum class order family genus species}.each do |level|
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+
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  it "#parse_taxonomy_taxcollector should parse taxcollector taxonomy (#{level})" do
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  taxcollector_taxonomies.each do |taxonomy|
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  taxonomy = lederhosen.parse_taxonomy_taxcollector(taxonomy)
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  taxonomy[level].should == level
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  end
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  end
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+
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+ it "#parse_taxonomy_greengenes should parse greengenes taxonomy (#{level})" do
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+ greengenes_taxonomies.each do |greengenes_taxonomy|
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+ taxonomy = lederhosen.parse_taxonomy_greengenes(greengenes_taxonomy)
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+ taxonomy[level].should == level
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+ end
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+ end
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+
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+ it "#parse_taxonomy_greengenes should parse qiime taxonomy #{level}" do
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+ qiime_taxonomies.each do |qiime_taxonomy|
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+ taxonomy = lederhosen.parse_taxonomy_qiime(qiime_taxonomy)
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+ taxonomy[level].should == level
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+ end
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+ end
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+
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  end
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  it '#parse_taxonomy_taxcollector should return original taxonomy' do
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  lederhosen.parse_taxonomy_taxcollector(taxcollector_taxonomies[0])['original'].should == taxcollector_taxonomies[0]
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  end
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- it '#parse_taxonomy_greengenes should parse greengenes taxonomy' do
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- greengenes_taxonomies.each do |greengenes_taxonomy|
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- taxonomy = lederhosen.parse_taxonomy_greengenes(greengenes_taxonomy)
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- levels = %w{domain phylum class order family genus species kingdom original}
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-
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- taxonomy.keys.each do |v|
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- levels.should include v
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- end
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- end
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- end
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-
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- it '#parse_taxonomy_greengenes should parse qiime taxonomy' do
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- qiime_taxonomies.each do |qiime_taxonomy|
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- taxonomy = lederhosen.parse_taxonomy_qiime(qiime_taxonomy)
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- levels = %w{domain phylum class order family genus species kingdom original}
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-
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- taxonomy.keys.each do |v|
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- levels.should include v
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- end
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- end
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- end
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  it '#parse_taxonomy should automatically detect and parse greengenes taxonomy' do
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  greengenes_taxonomies.each do |greengenes_taxonomy|
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
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  name: lederhosen
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  version: !ruby/object:Gem::Version
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- version: 1.8.1
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+ version: 1.8.2
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5
  prerelease:
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  platform: ruby
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  authors:
@@ -141,16 +141,10 @@ files:
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  - scripts/otu_ref_picking/readme.md
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  - scripts/readme.md
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143
  - spec/cli_spec.rb
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- - spec/data/ILT_L_9_B_001_1.txt.gz
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- - spec/data/ILT_L_9_B_001_3.txt.gz
146
- - spec/data/ILT_L_9_B_002_1.txt.gz
147
- - spec/data/ILT_L_9_B_002_3.txt.gz
148
- - spec/data/example.fastq
149
144
  - spec/data/test.uc
150
- - spec/data/trimmed_sizes.txt
145
+ - spec/data/trimmed/ILT_L_9_B_001.fasta
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146
  - spec/no_tasks_spec.rb
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147
  - spec/spec_helper.rb
153
- - spec/trimmer_spec.rb
154
148
  homepage: http://audy.github.com/lederhosen
155
149
  licenses:
156
150
  - MIT
@@ -166,7 +160,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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160
  version: '0'
167
161
  segments:
168
162
  - 0
169
- hash: 4470842345198425739
163
+ hash: 3159799387541849421
170
164
  required_rubygems_version: !ruby/object:Gem::Requirement
171
165
  none: false
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166
  requirements:
data/spec/data/ILT_L_9_B_001_1.txt.gz DELETED
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data/spec/data/ILT_L_9_B_001_3.txt.gz DELETED
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data/spec/data/ILT_L_9_B_002_1.txt.gz DELETED
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data/spec/data/ILT_L_9_B_002_3.txt.gz DELETED
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data/spec/data/example.fastq DELETED
@@ -1,400 +0,0 @@
1
- @HWUSI-EAS163FR:13:1:13:8520:20401:0:1:1
2
- GTGTGCCAGCCGCCGCGGTAATACGGAGGAGCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
3
- +HWUSI-EAS163FR:13:1:13:8520:20401:0:1:1
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- hhhhhhhhhh[ffffhhhghhhhhhR`de\EHXKUdffefhhghhhceh`aaccfedWeedddedVaQd^Y[HR[ZJTQZMNTSWbcad_bdad]^ZQU_B
5
- @HWUSI-EAS163FR:13:1:13:8520:20401:0:3:1
6
- GNNNACTACCGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
7
- +HWUSI-EAS163FR:13:1:13:8520:20401:0:3:1
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- aBBB[_a__T]BBBTW_\_V]^]J]^____afWfffff[ffffffT\B^\^\LY\eeffed_fWfTPY[[_bZL`[cacchggea``Zb`Ua`ca
9
- @HWUSI-EAS163FR:13:1:13:11817:20423:0:1:1
10
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAGGCGCGCGCAGGCGGATTGGTCAGTCTGTCTTAAAAGTTC
11
- +HWUSI-EAS163FR:13:1:13:11817:20423:0:1:1
12
- hhhhhhhhhhhhhhhhhhfhghgghacffaffdddhfhghhgffhf_affafddddagddddfagaeae]_ca_ce\acaY\VV^a\_ca_``S\[Z_^_Z
13
- @HWUSI-EAS163FR:13:1:13:11817:20423:0:3:1
14
- GNNNACTCACGNNNATCTAATCCCGTTTGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTCT
15
- +HWUSI-EAS163FR:13:1:13:11817:20423:0:3:1
16
- aBBBY____]]BBBI^WTV^fafdedfZfd^edd_ehhghhhdh[f]Wfdghehggdfhhhhhfgdgcgdgg_ffdccefacc[acfccBBBBBB
17
- @HWUSI-EAS163FR:13:1:13:17330:20421:0:1:1
18
- GTGCGCTAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGACAGTTT
19
- +HWUSI-EAS163FR:13:1:13:17330:20421:0:1:1
20
- fff[fbKdebffffagcgggeggfgcfcfaffdScfaffdgggggSdfffggegSRbec[c\fccJeJdd`eJ_e^KcR_ee^WWW[aadfdccSI]VO`a
21
- @HWUSI-EAS163FR:13:1:13:17330:20421:0:3:1
22
- GNNNACTACACNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
23
- +HWUSI-EAS163FR:13:1:13:17330:20421:0:3:1
24
- aBBB_aaaaa\BBBZ_`__\hehhghhhhfhhhhhghhhgggehghgahhghahheff]daaW]f]dffW]ccc]eeehchhfghfa^Lb^W]``
25
- @HWUSI-EAS163FR:13:1:13:17318:20444:0:1:1
26
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
27
- +HWUSI-EAS163FR:13:1:13:17318:20444:0:1:1
28
- ggggggggggfgggggggggggggeffff[`adadggggg_fcfffedfdgfgggf_affedfdfWfdfdcfWcfbRb_]bbb`beg_]ceebecdaeac]
29
- @HWUSI-EAS163FR:13:1:13:17318:20444:0:3:1
30
- GNNNACTACACNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
31
- +HWUSI-EAS163FR:13:1:13:17318:20444:0:3:1
32
- ^BBBV_aa_UTBBBTZ_\_Yghhhcfffdffh_hhffddf_ffffadffeff_[edffdbcaaWc_W]b_Z`Z\`]``b`ehfefcW_W__a_aa
33
- @HWUSI-EAS163FR:13:1:13:7273:20455:0:1:1
34
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
35
- +HWUSI-EAS163FR:13:1:13:7273:20455:0:1:1
36
- hhhhhhhhhhhhhhhhhhghhhhghadffZaccc`hggfhfhffh_[^bLW\XX[a_cc_badccV^X_Y\`Y\^a\__^aaZWaaa\ebadac_ZZ`V_^
37
- @HWUSI-EAS163FR:13:1:13:7273:20455:0:3:1
38
- GNNNACTACGCNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
39
- +HWUSI-EAS163FR:13:1:13:7273:20455:0:3:1
40
- ^BBBWX^_ZWWBBBTW_W]XhhehhfhhhdehchhhhhhhhhhhhY`B``\^\\^hhhfgghgdfa]ddec[dfadedccfdfcbb]Lbb\^_^_
41
- @HWUSI-EAS163FR:13:1:13:10932:20593:0:1:1
42
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
43
- +HWUSI-EAS163FR:13:1:13:10932:20593:0:1:1
44
- hhhhhhhhhhhhhhhhhhhhhhhhhhehhdehhhdhghghfhghhhahhhchhhhhdhhdaaffe^b`b`^b^`bdadddddb_eabadbcece_][`_`\
45
- @HWUSI-EAS163FR:13:1:13:10932:20593:0:3:1
46
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
47
- +HWUSI-EAS163FR:13:1:13:10932:20593:0:3:1
48
- aBBBX\a\\^\BBBZY_Z_Yeffffhhhhgchhhhhgfgghhhgh_`B`a``_`bfdhhfdegchfffegddffffffdfhdfabdcadd]cac`
49
- @HWUSI-EAS163FR:13:1:13:9788:20737:0:1:1
50
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
51
- +HWUSI-EAS163FR:13:1:13:9788:20737:0:1:1
52
- gggggggggggggggggeagfffffffdgegggfffggggggggfgegggfgggdb_Ydbb_bddegggddfbdfdaddaddddddgfggcebdJ[Y^\^d
53
- @HWUSI-EAS163FR:13:1:13:9788:20737:0:3:1
54
- GNNNACTACAGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCTGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
55
- +HWUSI-EAS163FR:13:1:13:9788:20737:0:3:1
56
- ^BBBU]]_]][BBBZ^````ghhghhhhhhgghhhhgghhhhhhg_bBbbbb```bgggdSDFFPRHUPOcdadddcdeffddbaedbaaX_Oa_
57
- @HWUSI-EAS163FR:13:1:13:9788:20763:0:1:1
58
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
59
- +HWUSI-EAS163FR:13:1:13:9788:20763:0:1:1
60
- hhhhhhhhhhhhhhhhhhghghhhhhghhgghhhdfhhghehhhhhdhhgfhhhhdb]fdddhhhdgdhddfadfa_bdafgfffdhffffhdfcd`gddd
61
- @HWUSI-EAS163FR:13:1:13:9788:20763:0:3:1
62
- GNNNACTACAGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
63
- +HWUSI-EAS163FR:13:1:13:9788:20763:0:3:1
64
- aBBBY_a_a_^BBBZ\aaa_hhhhhhhhhhghhhhhhhhhhhhgg`aB`dddbbdfghhhXGIGXUSSSUfhfhefcfhhhcfhgddbeaad^dc
65
- @HWUSI-EAS163FR:13:1:13:15892:20797:0:1:1
66
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
67
- +HWUSI-EAS163FR:13:1:13:15892:20797:0:1:1
68
- hhhhhhhhhhhhhhhhhhhhhhhhhhghh[fcffdhhhhhfhghhfbfffdhhhhfddfdddhhf_fafa`b]`bcaca_ddbaedaaee_dada__aac_
69
- @HWUSI-EAS163FR:13:1:13:15892:20797:0:3:1
70
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
71
- +HWUSI-EAS163FR:13:1:13:15892:20797:0:3:1
72
- aBBB[_a__\_BBBW\a^a\ghhhghhhhhghahhhhfchhhhhgbgfggghffhfgghfecdae[a_aa_dRbacdddedbfddd`\da[baab
73
- @HWUSI-EAS163FR:13:1:13:6920:20815:0:1:1
74
- GTGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGCGCGCGCAGGCGGATAGGTCAGTCTGTCTCAAAAGTTC
75
- +HWUSI-EAS163FR:13:1:13:6920:20815:0:1:1
76
- hhhhhhhhhhhhhhhhhhfhghhhheghhddfeddhgggghgfhhb^^bH^^^`^fdgdffdfcgaeccaaddacaaaa`a^a`d_^\`^\UQNX^\_^_]
77
- @HWUSI-EAS163FR:13:1:13:6920:20815:0:3:1
78
- GNNNACTACGCNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
79
- +HWUSI-EAS163FR:13:1:13:6920:20815:0:3:1
80
- aBBB[_aa_a]BBBXZ`]__hhghafhhdhfhhhhhhgfhhhhhhbdBdd`bdbeghhhgghgghffghhcadhadededhchafbabddHb_b^
81
- @HWUSI-EAS163FR:13:1:13:17972:20814:0:1:1
82
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGATCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
83
- +HWUSI-EAS163FR:13:1:13:17972:20814:0:1:1
84
- hhhhhhhhhhhhhhhhhhghhhhhhhgahggghhghhhghhhghhgehhhfhhhhabdfdbdhgebedhcahadhdadccddcbddfdddfheeaaabbdd
85
- @HWUSI-EAS163FR:13:1:13:17972:20814:0:3:1
86
- GNNNACTACGCNNNTATCTAANCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
87
- +HWUSI-EAS163FR:13:1:13:17972:20814:0:3:1
88
- aBBBYaaaa\_BBBYZ`__]dBeeeddeeeghghhfghhhhhhhhghhhhhhhfhfhhghfhhfhdggfdhgffhbdghdhfffeacddbcccdd
89
- @HWUSI-EAS163FR:13:1:13:7991:20840:0:1:1
90
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTGATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
91
- +HWUSI-EAS163FR:13:1:13:7991:20840:0:1:1
92
- hhhhhhhhhhhhhhhhhhfhhhhhhhghhffhhhfgggfhfhghh`_`bH\_^^^cdhgfecgffagdgabd_bddadcadebcc`a]aaddadaa]a`aa
93
- @HWUSI-EAS163FR:13:1:13:7991:20840:0:3:1
94
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
95
- +HWUSI-EAS163FR:13:1:13:7991:20840:0:3:1
96
- aBBB_aaaaa`BBB\\aaaahhhhhhhhhhgghhhhhhhhhhhhhbdBfdddbbdhghghhfafhhehehfbddghhgdhhdffgeedde[a_d_
97
- @HWUSI-EAS163FR:13:1:13:17959:20835:0:1:1
98
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGATCGTAGATGGATGTTTACGTCAGTTGTGAAAGTTT
99
- +HWUSI-EAS163FR:13:1:13:17959:20835:0:1:1
100
- cffffffffffafff]fWffcfQff`ZK`YcX^aWbbb`b[accf]W_ffOd]YJJZ^^Z_a_fYIYYZYP[G^^VURVZaWWG^QSGVS]b^BBBBBBBB
101
- @HWUSI-EAS163FR:13:1:13:17959:20835:0:3:1
102
- GNNNACTACGCNNNTATCTAANCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCCATCGGAGTTC
103
- +HWUSI-EAS163FR:13:1:13:17959:20835:0:3:1
104
- \BBBVaa^^aaBBB^Z`__]dBeeeceedeacfffSfdefhhhcggh_fgffef]affc]fafcf]ffaf[cfRa_c]c]cW_cJ^d^[W\YQ[]
105
- @HWUSI-EAS163FR:13:1:13:14495:20882:0:1:1
106
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
107
- +HWUSI-EAS163FR:13:1:13:14495:20882:0:1:1
108
- hhhhhhhhhhhhhhhhhhghhhhhhhghhfhhgghhhgfhgghhhhchhhhhgegfghfhhfhhhgfgegbfgdgffbdddd[ffdddf_dfdfcdc`ade
109
- @HWUSI-EAS163FR:13:1:13:14495:20882:0:3:1
110
- GNNNACTACGCNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCANCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
111
- +HWUSI-EAS163FR:13:1:13:14495:20882:0:3:1
112
- aBBB_bbbbbbBBB]^aaaahhhhhhhhhhhhghhhchhhhhhhgbbBddbbbbdhchhhhghghdhgdhffchgeffgfbgdcgeddb[__b_b
113
- @HWUSI-EAS163FR:13:1:13:2382:20888:0:1:1
114
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATCGGTCAGTCTGTCTTAAAAGTTC
115
- +HWUSI-EAS163FR:13:1:13:2382:20888:0:1:1
116
- hhhhhhhhhhhhhhhghhhhhhhhhe_ffdffcc`hghghhggehh_bhhehgffhdfggacfdhdhgheahgbggffbhgda]dbbbbaa[d_[^Qb_`R
117
- @HWUSI-EAS163FR:13:1:13:2382:20888:0:3:1
118
- GNNNACTACGGNNNTATCTAATCCCGTNCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
119
- +HWUSI-EAS163FR:13:1:13:2382:20888:0:3:1
120
- aBBBXaa^aaaBBBX^aaaahhhhheeBbededeegggaafhhhgdfBbb`ad`adfaffgghc[cf_]fW[`d_ehWcadehhd_aPbbM`]a^
121
- @HWUSI-EAS163FR:13:1:13:4259:20898:0:1:1
122
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
123
- +HWUSI-EAS163FR:13:1:13:4259:20898:0:1:1
124
- hhhhhhhhhhhhhhhhhhhhhhhhhfdffcffffchghghfhghhfaff_afccfhchhdcafcfafafaafaffeaeedeedaeaaaddeecdaa_dadb
125
- @HWUSI-EAS163FR:13:1:13:4259:20898:0:3:1
126
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
127
- +HWUSI-EAS163FR:13:1:13:4259:20898:0:3:1
128
- aBBB]aaaa^`BBB\[a^a^hhhhhfcfffT[F[]SXXTVhhhhfbbBdddbbbbghhhfhhhahhhgfhdfbafdfffchd]_cadbac_a\a_
129
- @HWUSI-EAS163FR:13:1:13:3280:20911:0:1:1
130
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATCAGTCAGTCTGTCTTAAAAGTTC
131
- +HWUSI-EAS163FR:13:1:13:3280:20911:0:1:1
132
- hhhhhhhhhhhhhhhhhhghhhhhhdeffdhhhddhdhghhhgghhabhhcheehgfhdffdghhghcggbheahdaabddaa^edcdedcce__a\aaa_
133
- @HWUSI-EAS163FR:13:1:13:3280:20911:0:3:1
134
- GNNNACTACCGNNNTATCTAATCCCGTNCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
135
- +HWUSI-EAS163FR:13:1:13:3280:20911:0:3:1
136
- `BBB]]IZ]]aBBBW^aaaaghhhhedBeedeeeeh]hhhhhhhaddBeedbddfhhhhghhheheghgghdcfdhchghhghehceehh_hddd
137
- @HWUSI-EAS163FR:13:1:13:4054:20949:0:1:1
138
- TGTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTT
139
- +HWUSI-EAS163FR:13:1:13:4054:20949:0:1:1
140
- ffcffdcddLZaaaac_ccadbdb]aaOaaW\[^aY`]a^fffccddXb]dOd__dd`dd``Wddd^d\dXH\GPaaW^^``d[^a\ZWd^^b]bWXW^Zd
141
- @HWUSI-EAS163FR:13:1:13:4054:20949:0:3:1
142
- GNNNACTACCGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
143
- +HWUSI-EAS163FR:13:1:13:4054:20949:0:3:1
144
- ^BBBW]_\[ZZBBBT\a^a\hhhhhe\eeeadaddfffffhhhhhbdB`bbbbbdgghhhfhhdhdggghfcegfhhfdcdchdgdedgd_daca
145
- @HWUSI-EAS163FR:13:1:13:4704:21006:0:1:1
146
- GTGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATGATTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCC
147
- +HWUSI-EAS163FR:13:1:13:4704:21006:0:1:1
148
- hhhhhhhhhhhhhhhhhhehfhhhheefffafcfffefdfhehhhb_`dH]aaa_gdhdcddgghdgdhcdhgdgbddcdccgad^aaac_d_a]_\_^\a
149
- @HWUSI-EAS163FR:13:1:13:4704:21006:0:3:1
150
- GNNNACTACAGNNNTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTNCTCAGCGTCAGTAACGGCCCAGAGACCTGCCTTCGCCATTGGTGTTC
151
- +HWUSI-EAS163FR:13:1:13:4704:21006:0:3:1
152
- ]BBBXY____`BBBY^a^aahehhhhhhhhghchhhhhhghhhffddBddd`dadehhhggggheghggfafdhdcddddhhhdgacWdbadadc
153
- @HWUSI-EAS163FR:13:1:13:15502:21011:0:1:1
154
- GTGTGCCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
155
- +HWUSI-EAS163FR:13:1:13:15502:21011:0:1:1
156
- hhhhhhhhhhhhhhhhghfhhhghhfbffcZdbbbeddbehffhhhefhhfffhfffhfgfcgchfffffdfdcgfcdcc__T_ca\]a]`dac`a_^a_d
157
- @HWUSI-EAS163FR:13:1:13:15502:21011:0:3:1
158
- GNNNACTACGGNNNTATCTAANCCTGTTTGCTCCCCACGCTTTCGCANCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
159
- +HWUSI-EAS163FR:13:1:13:15502:21011:0:3:1
160
- aBBB^aa_^a_BBBY\aaaadBffdfffffhhhhhhegghfhhhd`^Bd__`_bbfffhdfdfegaggdaddadddfffcdccfcddd_a]aaaa
161
- @HWUSI-EAS163FR:13:1:13:13717:21119:0:1:1
162
- GTGTGCCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCTGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
163
- +HWUSI-EAS163FR:13:1:13:13717:21119:0:1:1
164
- ggggggggegegggfgggagdgbdgebdfc[fddaddd_dba`aJ^\\]^dfcaddde`c]ab]bd`dd`_cccbaY]_]WTZT]\\\_XY]R]VZUZ\L_
165
- @HWUSI-EAS163FR:13:1:13:13717:21119:0:3:1
166
- GNNNACTACCCNNNTATCTAANCCTGTTTGCTCCCCACGCTTTCGCANCTGAGCGTAAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
167
- +HWUSI-EAS163FR:13:1:13:13717:21119:0:3:1
168
- `BBB_bbbbbbBBB\_aaa^cBddafffdehhghhhhhhfhhhffd\Bd`^``ddRSU\V[Z[Z[hhhhh_c[caeabdcefdaddddad`acdd
169
- @HWUSI-EAS163FR:13:1:13:2231:21246:0:1:1
170
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
171
- +HWUSI-EAS163FR:13:1:13:2231:21246:0:1:1
172
- hhhhhhhhchhhghffhghhghhhhhhghgfgghdfghehdhghhabfffbhhhhfdffdcafffbfffbcfaffeehhegf]Wgacafaffc]a`_c`fQ
173
- @HWUSI-EAS163FR:13:1:13:2231:21246:0:3:1
174
- GNNNACTACCGNNNTATCTAATCCTGTNTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
175
- +HWUSI-EAS163FR:13:1:13:2231:21246:0:3:1
176
- aBBBa_aa^aaBBB^\aaaaghhhhffBffeeeee_c_cdfdfffdcBeeffdefhh]Yc[W_ffhffdh[ffRafdcccghf_cfadfdW[cfW
177
- @HWUSI-EAS163FR:13:1:13:11172:21249:0:1:1
178
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATCGGTCAGTCTGTCTTAAAAGTTC
179
- +HWUSI-EAS163FR:13:1:13:11172:21249:0:1:1
180
- hhhhhhhhhhhhhhhhhhfhhhgghdghhdhhggehggfhfegfhhcdgfdfebddffdfdaddfdfdfdcddcec`ccca_`__`aaa^ada___]a^aY
181
- @HWUSI-EAS163FR:13:1:13:11172:21249:0:3:1
182
- GNNNACTACACNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
183
- +HWUSI-EAS163FR:13:1:13:11172:21249:0:3:1
184
- _BBBZaaaaaaBBBZ^aaaahhhhhhhhhhhhhhhhhfghhhhhhb`Bbdbbdbdghdhhfffbfhffdhggdadcffffhbgad__]c[_c_aa
185
- @HWUSI-EAS163FR:13:1:13:1874:21266:0:1:1
186
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGCAAGTTT
187
- +HWUSI-EAS163FR:13:1:13:1874:21266:0:1:1
188
- gggggggfgggggggggcggaggggfdffafeffdfafff_fedfdK`ddQfcfdfafc```fbd]dQ[_]f_fffabfaddbaf^``bbacf_J]_bW`e
189
- @HWUSI-EAS163FR:13:1:13:1874:21266:0:3:1
190
- GNNNACTACCGNNNTATCTAATCCTGTNTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTCAGCAGGCTGCCTTCGCAATCGGAGTTC
191
- +HWUSI-EAS163FR:13:1:13:1874:21266:0:3:1
192
- aBBB`^aa\aaBBBV[a\a\fhdafedBda]^acdfhfhhcafcfWaB_ca`^d_fcfffLb]LW`eJa_Sa^Ra^Wa]eLaaR^`[^daLKSa[
193
- @HWUSI-EAS163FR:13:1:13:3728:21370:0:1:1
194
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
195
- +HWUSI-EAS163FR:13:1:13:3728:21370:0:1:1
196
- hhhhhhhhhhghhhhhhhhhhhhhhfcffdhhhhehhhhhhhghhfaffcbffcffcffa`_ddd_f`f``d_bdebfedff]_f`__bbaccc_^Y`Z_`
197
- @HWUSI-EAS163FR:13:1:13:3728:21370:0:3:1
198
- GNNNACNACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNCTCAATGTCAGTTGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
199
- +HWUSI-EAS163FR:13:1:13:3728:21370:0:3:1
200
- bBBB^\Ba^_\BBBZ[a\a\hhhhhhhhhfhgghhfhdhgfffff`dBbdbdbddhghghfdgdgeghfgfhhhgha]aghfefdbddddRa^a`
201
- @HWUSI-EAS163FR:13:1:13:14734:21363:0:1:1
202
- GTGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATAGGTCAGTCTGTCTTAAAAGTTC
203
- +HWUSI-EAS163FR:13:1:13:14734:21363:0:1:1
204
- hhhhhhhhghhhhhhhhhfhhhhhhehhhchhffdhhgfhhghhhhffdhfffgfcfgdghfffhfggghbfd_fca_b_b]b_b_aabafccccdcabca
205
- @HWUSI-EAS163FR:13:1:13:14734:21363:0:3:1
206
- GNNNACTACGGNNNTATCTAANCCCGTTCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
207
- +HWUSI-EAS163FR:13:1:13:14734:21363:0:3:1
208
- ^BBBYa`_aabBBB\aaaaaeBeeeedeeehhhhhhhhhgfhhhcd`Bd`d`addghdhdghhhgfghghehh_^aacfcdd[egcdcca^aaad
209
- @HWUSI-EAS163FR:13:1:13:2725:21428:0:1:1
210
- GTGTGCCAGNAGCCGCGGTAATACGTAGGGGGCAAGCGTTATCCGGATTTACTGGGTGTAAAGGGAGCGTAGACGGTTCTGCAAGTCTGGAGTGAAAGCCC
211
- +HWUSI-EAS163FR:13:1:13:2725:21428:0:1:1
212
- hhhhhfffeBdffffffheffffffhhhhhhgghhhhhghdhfhhh_hhhfghhffbfddacfcdbfdfdWf]cfghhgghedWcddffdWfddJ\W^^BB
213
- @HWUSI-EAS163FR:13:1:13:2725:21428:0:3:1
214
- GNNNACNACGCNNNTATCTAATCCCGTNCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
215
- +HWUSI-EAS163FR:13:1:13:2725:21428:0:3:1
216
- aBBB_`Bbba`BBBY^bba`hhhhhffBec^cccc\Jdccehhh[daB`adbddehehhhhhhcgeehhhcJ^[_bWWbbhagfcddbae[_fWd
217
- @HWUSI-EAS163FR:13:1:13:6824:21459:0:1:1
218
- NTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTCATTGGGTTTAAAGGGAGCGTAGGCGGACGCTTAAGTCAGTTGTGAAAGTTT
219
- +HWUSI-EAS163FR:13:1:13:6824:21459:0:1:1
220
- BSSSSWWWWWb__b___________VUVTTVVVVVYYYYY_____BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
221
- @HWUSI-EAS163FR:13:1:13:6824:21459:0:3:1
222
- GNNNACTACGCNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGNATCAGCGTCAGTTACAGTCCAGCAGGCTGCCTTCGCAATCGGAGTTC
223
- +HWUSI-EAS163FR:13:1:13:6824:21459:0:3:1
224
- ^BBBT\a]\_\BBB[W_W_Wfhhhhghhhg_ghhhhchhghhhgh^`B_`bb`_`ecfgfhffdfaffdfcfdfddddcfddd`cabaab\a\a_
225
- @HWUSI-EAS163FR:13:1:13:9876:21486:0:1:1
226
- NTGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
227
- +HWUSI-EAS163FR:13:1:13:9876:21486:0:1:1
228
- BSSSSWVVVVb_bb__bbbbbbb__YYYYQPWWWW[Y[[[b_b__b__b________bb______________Z______WQQWVOUUUSYYYYPWWTWW_
229
- @HWUSI-EAS163FR:13:1:13:9876:21486:0:3:1
230
- GNNNACTACGCNNNTATCTAANCCTGTCTGCTCCCCACGCTTTCGCANCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
231
- +HWUSI-EAS163FR:13:1:13:9876:21486:0:3:1
232
- `BBB_`bb`b`BBB\\a^_^dBddd]YF[[ZZ[[[gghgehhhfgbbBbb_bb`bdgdfdgggegfhhdhcddbcefdfffcfdddfcba[_aaa
233
- @HWUSI-EAS163FR:13:1:13:7294:21566:0:1:0
234
- NNGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATCATTGGGCGTAAAGCGCGCGCAGGCGGATCGGTCAGTCTGTCTTAAAAGTTC
235
- +HWUSI-EAS163FR:13:1:13:7294:21566:0:1:0
236
- BBKOJNQNQQ__________YYYYYYYYYYVTTVV[[[[[_____BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
237
- @HWUSI-EAS163FR:13:1:13:7294:21566:0:3:0
238
- GNNNACNACCGNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGNCTCAGCGTCAGTTTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
239
- +HWUSI-EAS163FR:13:1:13:7294:21566:0:3:0
240
- aBBB]_Baaa^BBBTX]V][hhhheghhgh_hghhhehghhhheha`B`ab_b`bddRfehhhefgfffaf[fgdcgfdffca_a_acca_d_d_
241
- @HWUSI-EAS163FR:13:1:14:4037:1434:0:1:1
242
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGAGTTATCCGGATTTAGTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
243
- +HWUSI-EAS163FR:13:1:14:4037:1434:0:1:1
244
- hhhghhhhhhhhhhhhhhfghhgghedhhaadddb`Q`_bacaccgcdggYHa^^ZW[ZXaaccd`bbda^a\aad__b_aa__aaa`d`ddad`_]b]aa
245
- @HWUSI-EAS163FR:13:1:14:4037:1434:0:3:1
246
- GNNNACTACCCNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
247
- +HWUSI-EAS163FR:13:1:14:4037:1434:0:3:1
248
- PBBBX`_aaabBBB`]``__ghhhghhhhhfhfhhhahhhhhhhhehhhhhhhhebfdedBdfbda_a_ahhcfgfhhhhhh]ghchhdddccge
249
- @HWUSI-EAS163FR:13:1:14:18004:1460:0:1:1
250
- GTGTGCCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
251
- +HWUSI-EAS163FR:13:1:14:18004:1460:0:1:1
252
- hhhhhhhhhhfhhhhhhhfhhghhgfbffcQdbbbfdfdfddbddhddgghchhggchddbbd_fabdddddbag__aaa^\Y^`_a_aG^_Z_Y^a__^b
253
- @HWUSI-EAS163FR:13:1:14:18004:1460:0:3:1
254
- GNNNACTACAGNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTTAGCGTCAGTNTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
255
- +HWUSI-EAS163FR:13:1:14:18004:1460:0:3:1
256
- _BBB_aaaaaaBBBZ_____hhhhhhhhhhhhhhhhchghhhhfhd]hhdbhdfhbbbb`B_`^aZ\\\Ybbdddcdegf]ccda]^_^^U[^^_
257
- @HWUSI-EAS163FR:13:1:14:10965:1570:0:1:1
258
- GTGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTCATCCGGAATTACTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCC
259
- +HWUSI-EAS163FR:13:1:14:10965:1570:0:1:1
260
- gggggggggggggggggggggggggddfffaffcfaN_][TPQQUURSXZ[F^\\ZUZZZaadddddae`a[aabc`aaZ_aa_aa_aaVW___WZSROYX
261
- @HWUSI-EAS163FR:13:1:14:10965:1570:0:3:1
262
- GNNNACTACGCNNNTATCTAATCCTGTTCGCTCCCCACGCTTTCGCTCCTCAGCGTCAGTNACGGCCCAGAGACCTGCCTTCGCCATTGGTGTTC
263
- +HWUSI-EAS163FR:13:1:14:10965:1570:0:3:1
264
- ^BBBVa]__Z]BBBX\]]_`hffhdafffcgghhhh`hhfghhdhhdhhgefeef^aa`_Bbb__``a^_aabae_adgaacaccZR\\\R][^^
265
- @HWUSI-EAS163FR:13:1:14:6225:1638:0:1:1
266
- GTGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTAGTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
267
- +HWUSI-EAS163FR:13:1:14:6225:1638:0:1:1
268
- ggggggggggggggfgggggggggggeggg`gggg]O^[^bb`dbggfggWMZZU_`b_`gdfggdQbdddgaddaad__bbb_]_baaa]UZ_`aadabf
269
- @HWUSI-EAS163FR:13:1:14:6225:1638:0:3:1
270
- GNNNACTACGCNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTNTTCGTCCAGGGGGCCGCCTTCGCCACAGGTATTC
271
- +HWUSI-EAS163FR:13:1:14:6225:1638:0:3:1
272
- aBBBabbbbb]BBBY]___]hhhhhhhhhhhhhhhhfhghhhhhfhhhhhdechgbdbbbBZ^^]bddb`_gggghcddacfaaf`b`[_[`^[_
273
- @HWUSI-EAS163FR:13:1:14:19237:1628:0:1:1
274
- GTGTGCNAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
275
- +HWUSI-EAS163FR:13:1:14:19237:1628:0:1:1
276
- hhhhhfBfffdfffdhhhghhhhhhgghhaacfccghhghdhhhhgcehhchhhgfadedcdgdgbeeeabd_bdgcdcabdbaaabadadddda__daaa
277
- @HWUSI-EAS163FR:13:1:14:19237:1628:0:3:1
278
- GNNNACTACAGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
279
- +HWUSI-EAS163FR:13:1:14:19237:1628:0:3:1
280
- aBBB^aaaaa_BBB[^aaaahhhhhhhhghghghhhghghhhhhghhhhhhhahh`bbb`B^a^a]\\\\fgdadcadegde[gbdaac_Wdada
281
- @HWUSI-EAS163FR:13:1:14:12932:1741:0:1:1
282
- GTGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAGATCCC
283
- +HWUSI-EAS163FR:13:1:14:12932:1741:0:1:1
284
- hhghhhhhhhhhhhhhghhhhhhhhhghhgbffffdhfehhgghggghhhbUb```bd`bggghhhffghffffgfdhfdebe_daddaaddaa___Q`]c
285
- @HWUSI-EAS163FR:13:1:14:12932:1741:0:3:1
286
- GNNNACTACCGNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTNTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
287
- +HWUSI-EAS163FR:13:1:14:12932:1741:0:3:1
288
- ^BBB\aaaaaaBBB^`````hghhh^fffffdhhhhghhgghhgahhfhfggghh`daa^Bddddbdb`bda_ehhhfhg_fW_d\d^`Z\aaaa
289
- @HWUSI-EAS163FR:13:1:14:12140:1797:0:1:1
290
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGCGCGCGCAGGCGGATAGGTCAGTCTGTCTTAAAAGTTC
291
- +HWUSI-EAS163FR:13:1:14:12140:1797:0:1:1
292
- hhhhhhhhhhhhhhhhhhghhhhhh`bff]bdbbbhghghggehhhdahh^Ra`^```^`dfffgaedebahddfd___]____a`cada_bbI___aa_]
293
- @HWUSI-EAS163FR:13:1:14:12140:1797:0:3:1
294
- GNNNACTACACNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTNTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
295
- +HWUSI-EAS163FR:13:1:14:12140:1797:0:3:1
296
- aBBB_aaaaa]BBBX\`\`_hhhhchhhhehhhhhf`affhhhhchchhhhhghgbfddbBddddbdddbgghgahghhdhhhgh_dbdc_daad
297
- @HWUSI-EAS163FR:13:1:14:9185:1953:0:1:1
298
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGCGTAAAGCGCGCGCAGGCGGATCGGTCAGTCTGTCTTAAAAGTTC
299
- +HWUSI-EAS163FR:13:1:14:9185:1953:0:1:1
300
- hhhghhhhhhhhhhhhhhghhhhhhdhhhdhghhgcWfccfdffdddfhhbR`_```b`bhfdfggfgfhfhddfcf_fcaac_c\aa_\cabacaaa``b
301
- @HWUSI-EAS163FR:13:1:14:9185:1953:0:3:1
302
- GNNNACTACCGNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTNTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
303
- +HWUSI-EAS163FR:13:1:14:9185:1953:0:3:1
304
- ^BBB]aa^^\^BBBXbbbb`hhhhhhhhhfhfhhhhchhhfhhhhhhhgcfdfffbfffdBeeed`eeedheccghghhhhhghhghhgRacacf
305
- @HWUSI-EAS163FR:13:1:14:9209:1945:0:1:1
306
- GTGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTACTGGGTGTAAAGGGCGCGCAGGTGGATGTGTAAGTCTGTTTTGAAAGTTT
307
- +HWUSI-EAS163FR:13:1:14:9209:1945:0:1:1
308
- ffffaffffed_ddfafffa`d_`dQU]ZTKRQKP^M]\^W_Z^_[PH^\SEZTUTKPWOZW^H^BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
309
- @HWUSI-EAS163FR:13:1:14:9209:1945:0:3:1
310
- GNNNACTACCGNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTNTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
311
- +HWUSI-EAS163FR:13:1:14:9209:1945:0:3:1
312
- _BBB]aaaaa\BBB]Z__]_ffff[fffLfcffffccfffffffadfaafacaWa`^Y``B`^I]WQNWYJ^^^\W^`\efffc``[b^bPJW_^
313
- @HWUSI-EAS163FR:13:1:14:5635:2015:0:1:1
314
- GTGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTATCCGGAATTACTGGGCGTAAAGGGCTCGTAGGCGGTTCGTCGCGTCCGGTGTGAAAGTCC
315
- +HWUSI-EAS163FR:13:1:14:5635:2015:0:1:1
316
- hhhhhhhhhhhhhhhhhhhhhhhhhghhhh]ffcfaOcabfffffhfghh`Hdd`aaa_agghfhhfhhfeghghgdfgfaddbdddgbg_dccaccdabf
317
- @HWUSI-EAS163FR:13:1:14:5635:2015:0:3:1
318
- GNNNACTACGCNNNTATCTAATCCTGTTCGCTCCCTACGCTTTCGCTCCTCAGCGTCAGTNACGGCCCAGAGACCTGCCTTCGCCATTGGTGTTC
319
- +HWUSI-EAS163FR:13:1:14:5635:2015:0:3:1
320
- aBBB`aaaaa\BBBTa``_YhhhhghhhhhhghhhdcfhghhhhhhfhhhhhhhhfffffBddd`ddd``feefeddffdhhgeheeggdad_de
321
- @HWUSI-EAS163FR:13:1:14:17418:2043:0:1:1
322
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
323
- +HWUSI-EAS163FR:13:1:14:17418:2043:0:1:1
324
- hhhhhhhhhhhhhhhhhhghhhhhhhfhhfghhhegghghhgfhggdhhhcghggdafedddgedcgfgdcg[dggbcdebddadcedddeeagaaac\bd
325
- @HWUSI-EAS163FR:13:1:14:17418:2043:0:3:1
326
- GNNNACTACAGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
327
- +HWUSI-EAS163FR:13:1:14:17418:2043:0:3:1
328
- aBBBaaaaaaZBBBW^aaaahhhhhhhhhhdchhhhhhhhhhhhghhghhhhchhfffffBdebd^[\[[[fddfhggggfghegeggLe]dab_
329
- @HWUSI-EAS163FR:13:1:14:16008:2079:0:1:1
330
- GTGTGCCAGCCGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTTGTTAAGTCAGATGTGAAATCCC
331
- +HWUSI-EAS163FR:13:1:14:16008:2079:0:1:1
332
- hhhhhhhhhhhhhhhghhhhhhhhhfdffc`ffffhgfehgcghhfe[hheehea]afccffhcgecbecdhffgdedgda``accdbdQ_aac\`]`_^c
333
- @HWUSI-EAS163FR:13:1:14:16008:2079:0:3:1
334
- GNNNACTACCGNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTNTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
335
- +HWUSI-EAS163FR:13:1:14:16008:2079:0:3:1
336
- ^BBB[]a_a]aBBB\`b`bahhhhhfghhhhhhhhhchhghhhhhhWhhhfhgggbbbbbB`d`d___[_]ddcdeedfffdacfddcdda[daa
337
- @HWUSI-EAS163FR:13:1:14:14760:2094:0:1:1
338
- GTGTGCCAGCCGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
339
- +HWUSI-EAS163FR:13:1:14:14760:2094:0:1:1
340
- hhhhhhhhhhhhhhghhghhhhhhhhghhdhghhchhhhhfhgghfcfffdhhhcfaffabcdedahdhgbf_dedaaeddedaedccedfffg]aagdde
341
- @HWUSI-EAS163FR:13:1:14:14760:2094:0:3:1
342
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
343
- +HWUSI-EAS163FR:13:1:14:14760:2094:0:3:1
344
- ^BBBW_aa__`BBB]\a^a_hhhhhhhhhhghhhhhhhhhhhhhhhhhhhhhghgaffccB``^`JTWWWfhdfffchhffhbgeddgdacdcab
345
- @HWUSI-EAS163FR:13:1:14:8199:2240:0:1:1
346
- GTGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGATTTACTGGGTTTAAAGGGCGCGCAGGCGGATCTGTCAGTCTGTCTTGAAAGTTC
347
- +HWUSI-EAS163FR:13:1:14:8199:2240:0:1:1
348
- hhhhhhhhhhhghhhhgghhhhhhhR[a_OROWPU^Q^]^Zda`ab^KbbZK\ZZTILTT^^`K`Z`^`QZ[JJ[ZZZOFITFQR___a`BBBBBBBBBBB
349
- @HWUSI-EAS163FR:13:1:14:8199:2240:0:3:1
350
- GNNNACTACGGNNNTATCTAATCCCGTTTGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTNTTCGTCCAGAAAGCCGCCTTCGCCACTGGTGTTC
351
- +HWUSI-EAS163FR:13:1:14:8199:2240:0:3:1
352
- ^BBBWaa___IBBBT\aaaahhhh]fffQfLd[ee^KLY^ededa[fffffcR[f]^^^^BUUT[OKNXUN]Z\L\[a`^dhdd[WQQ[[R^^__
353
- @HWUSI-EAS163FR:13:1:14:10159:2240:0:1:1
354
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGTGTTATCCGGATTTACTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
355
- +HWUSI-EAS163FR:13:1:14:10159:2240:0:1:1
356
- hhhhhhhhhhhhhhhhhhhhhhhhhhhhhghhhhhbFdbbcffffgfhhh^Hc_^_^_a_hfghhfghhg`[_`bhgggdggcegchhgdegaeccdgdaf
357
- @HWUSI-EAS163FR:13:1:14:10159:2240:0:3:1
358
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
359
- +HWUSI-EAS163FR:13:1:14:10159:2240:0:3:1
360
- ^BBB]a_a___BBBZaaa_ahhhhhhhhhghhfhhghhhhhhhghhghhfhhhdh_`d``B`e``a^^^_dhddhcbgggegdgfb`L_^]a_ac
361
- @HWUSI-EAS163FR:13:1:14:19702:2247:0:1:1
362
- GTGTGCNAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATAGGTCAGTCTGTCTTAAAAGTTC
363
- +HWUSI-EAS163FR:13:1:14:19702:2247:0:1:1
364
- fffffdBdddY\aa^fffdffffffdfffcfffffeffeffefffecdefeeededffdeedddeeeddededdddddYY`]U]`_cccadddabbac`c_
365
- @HWUSI-EAS163FR:13:1:14:19702:2247:0:3:1
366
- GNNNACTACGGNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTATTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
367
- +HWUSI-EAS163FR:13:1:14:19702:2247:0:3:1
368
- ^BBB]aaaaabBBB\Z_\\_hgghhhhhhcfchhhhccghhhhghhhhhhhahhfefhfaRfdbdeffefhhhhahghegefeccccccaZ^]``
369
- @HWUSI-EAS163FR:13:1:14:10956:2321:0:1:1
370
- GTGTGCCAGCCGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGATCAGTCAGTCTCTCTTAAAAGTTC
371
- +HWUSI-EAS163FR:13:1:14:10956:2321:0:1:1
372
- hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhaafefhhhhhhhhhhdFdb``dd^ddhehhhhhghd[dcdeeaheeaedeOVFFEVTNNSgfge`g
373
- @HWUSI-EAS163FR:13:1:14:10956:2321:0:3:1
374
- GNNNACTACCCNNNTATCTAATCCCGTTCGCTCCCCTGGCTTTCGCGCCTCAGCGTCAGTNTTCGTCCAGAAAGTCGCCTTCGCCACTGGTGTTC
375
- +HWUSI-EAS163FR:13:1:14:10956:2321:0:3:1
376
- ^BBB]aaaaaaBBBZaaaaahhhhhhhhhcfdffffcfffhhhhghahheffefe^da`^Ba`d``dfbbghhecfafeadebdfac_a_M^\Z^
377
- @HWUSI-EAS163FR:13:1:14:14947:2338:0:1:1
378
- GTGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTCTGTCAAGTCGGATGTGAAATCCC
379
- +HWUSI-EAS163FR:13:1:14:14947:2338:0:1:1
380
- hhhhhhhhhhhhhhhhhhghghhhhhehhhbffdfffhhhhegghhhdhhgegaehhadcgggghgfghg[e_aegdfbdcdedc]dcc[_c_caW\Z^^h
381
- @HWUSI-EAS163FR:13:1:14:14947:2338:0:3:1
382
- GNNNACTACCGNNNTATCTAATCCTGTTTGCTCCCCACGCTTTCGCACCTGAGCGTCAGTCTTCGTCCAGGGGGCCGCCTTCGCCACCGGTATTC
383
- +HWUSI-EAS163FR:13:1:14:14947:2338:0:3:1
384
- `BBB`bbbb`^BBB[``___hhhhhhhhhhhhhhhhghhhhhhhghahhg]fcffdfff]ZQ^]`ghehfgbgggddehcegccgdfd]bVaa_c
385
- @HWUSI-EAS163FR:13:1:14:3515:2423:0:1:1
386
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
387
- +HWUSI-EAS163FR:13:1:14:3515:2423:0:1:1
388
- hhhhhhhhhhhhhhhhhhhhhhhhhfaffZ`bbbbhfhghhhghhhbhhh_N__da^da^dbfeeafcfeaf_achadddddcaeddbgacede__adbbc
389
- @HWUSI-EAS163FR:13:1:14:3515:2423:0:3:1
390
- GNNNACTACACNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
391
- +HWUSI-EAS163FR:13:1:14:3515:2423:0:3:1
392
- _BBBZ_aa_\\BBBW]````hhhhhghhhhchahhhgh[hhhhhh_hhhhhhg_hdddddB[aWaaa_a^caacfddffdhhhgJbb`^_abccd
393
- @HWUSI-EAS163FR:13:1:14:6115:2415:0:1:1
394
- GTGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTACTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTT
395
- +HWUSI-EAS163FR:13:1:14:6115:2415:0:1:1
396
- hhhhhhhhhhhhhhhhhhhhhhhhhhdhh[Zadaa\F\Z\`dda`hehhh`Mda`a^^a_hghhgahhhfghaahgdfgfadgegdfag`fhfg__dda_a
397
- @HWUSI-EAS163FR:13:1:14:6115:2415:0:3:1
398
- GNNNACTACGGNNNTATCTAATCCTGTTTGATACCCACACTTTCGAGCCTCAATGTCAGTNGCAGCTTAGCAGGCTGCCTTCGCAATCGGAGTTC
399
- +HWUSI-EAS163FR:13:1:14:6115:2415:0:3:1
400
- aBBB_a`aa]ZBBBYaaaaahhhhhhhhhhdhchhhhhhhhhhhghhhghehhghbdfdbB`ead`\\^^fhdefacffadfddWb`b``adabe
data/spec/data/trimmed_sizes.txt DELETED
@@ -1,100 +0,0 @@
1
- 99
2
- 91
3
- 100
4
- 85
5
- 100
6
- 91
7
- 100
8
- 81
9
- 100
10
- 81
11
- 100
12
- 91
13
- 100
14
- 91
15
- 100
16
- 91
17
- 100
18
- 91
19
- 100
20
- 91
21
- 100
22
- 91
23
- 100
24
- 91
25
- 92
26
- 91
27
- 100
28
- 91
29
- 99
30
- 91
31
- 100
32
- 91
33
- 100
34
- 81
35
- 100
36
- 81
37
- 100
38
- 91
39
- 100
40
- 91
41
- 100
42
- 91
43
- 99
44
- 91
45
- 100
46
- 91
47
- 100
48
- 91
49
- 100
50
- 81
51
- 100
52
- 91
53
- 98
54
- 91
55
- 40
56
- 91
57
- 96
58
- 91
59
- 35
60
- 81
61
- 100
62
- 91
63
- 100
64
- 91
65
- 100
66
- 91
67
- 100
68
- 91
69
- 100
70
- 91
71
- 100
72
- 91
73
- 100
74
- 91
75
- 100
76
- 91
77
- 49
78
- 91
79
- 100
80
- 91
81
- 100
82
- 91
83
- 100
84
- 91
85
- 100
86
- 91
87
- 89
88
- 81
89
- 100
90
- 91
91
- 100
92
- 91
93
- 100
94
- 91
95
- 100
96
- 91
97
- 100
98
- 91
99
- 100
100
- 91