lederhosen 0.0.4 → 0.0.5
Sign up to get free protection for your applications and to get access to all the features.
- data/lib/lederhosen/helpers.rb +1 -1
- data/lib/version.rb +1 -1
- metadata +7 -22
data/lib/lederhosen/helpers.rb
CHANGED
|
@@ -8,7 +8,7 @@ module Lederhosen
|
|
|
8
8
|
# Filenames should look like this:
|
|
9
9
|
# IL5_L_1_B_007_1.txt
|
|
10
10
|
def get_grouped_qseq_files(glob='raw_reads/*.txt')
|
|
11
|
-
Dir.glob(glob).group_by { |x| x.split('_')[0..4].join('_') }
|
|
11
|
+
Dir.glob(glob).group_by { |x| File.basename(x).split('_')[0..4].join('_') }
|
|
12
12
|
end
|
|
13
13
|
|
|
14
14
|
# Trim a pair of QSEQ files. Saves to a single,
|
data/lib/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,13 +1,12 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: lederhosen
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
|
|
5
|
-
prerelease:
|
|
4
|
+
prerelease: false
|
|
6
5
|
segments:
|
|
7
6
|
- 0
|
|
8
7
|
- 0
|
|
9
|
-
-
|
|
10
|
-
version: 0.0.
|
|
8
|
+
- 5
|
|
9
|
+
version: 0.0.5
|
|
11
10
|
platform: ruby
|
|
12
11
|
authors:
|
|
13
12
|
- Austin G. Davis-Richardson
|
|
@@ -15,17 +14,16 @@ autorequire:
|
|
|
15
14
|
bindir: bin
|
|
16
15
|
cert_chain: []
|
|
17
16
|
|
|
18
|
-
date: 2012-04-13 00:00:00
|
|
17
|
+
date: 2012-04-13 00:00:00 -04:00
|
|
18
|
+
default_executable:
|
|
19
19
|
dependencies:
|
|
20
20
|
- !ruby/object:Gem::Dependency
|
|
21
21
|
name: dna
|
|
22
22
|
prerelease: false
|
|
23
23
|
requirement: &id001 !ruby/object:Gem::Requirement
|
|
24
|
-
none: false
|
|
25
24
|
requirements:
|
|
26
25
|
- - ">="
|
|
27
26
|
- !ruby/object:Gem::Version
|
|
28
|
-
hash: 3
|
|
29
27
|
segments:
|
|
30
28
|
- 0
|
|
31
29
|
version: "0"
|
|
@@ -35,11 +33,9 @@ dependencies:
|
|
|
35
33
|
name: thor
|
|
36
34
|
prerelease: false
|
|
37
35
|
requirement: &id002 !ruby/object:Gem::Requirement
|
|
38
|
-
none: false
|
|
39
36
|
requirements:
|
|
40
37
|
- - ">="
|
|
41
38
|
- !ruby/object:Gem::Version
|
|
42
|
-
hash: 3
|
|
43
39
|
segments:
|
|
44
40
|
- 0
|
|
45
41
|
version: "0"
|
|
@@ -49,11 +45,9 @@ dependencies:
|
|
|
49
45
|
name: rspec
|
|
50
46
|
prerelease: false
|
|
51
47
|
requirement: &id003 !ruby/object:Gem::Requirement
|
|
52
|
-
none: false
|
|
53
48
|
requirements:
|
|
54
49
|
- - ">="
|
|
55
50
|
- !ruby/object:Gem::Version
|
|
56
|
-
hash: 3
|
|
57
51
|
segments:
|
|
58
52
|
- 0
|
|
59
53
|
version: "0"
|
|
@@ -63,11 +57,9 @@ dependencies:
|
|
|
63
57
|
name: bundler
|
|
64
58
|
prerelease: false
|
|
65
59
|
requirement: &id004 !ruby/object:Gem::Requirement
|
|
66
|
-
none: false
|
|
67
60
|
requirements:
|
|
68
61
|
- - ">="
|
|
69
62
|
- !ruby/object:Gem::Version
|
|
70
|
-
hash: 3
|
|
71
63
|
segments:
|
|
72
64
|
- 0
|
|
73
65
|
version: "0"
|
|
@@ -77,11 +69,9 @@ dependencies:
|
|
|
77
69
|
name: progressbar
|
|
78
70
|
prerelease: false
|
|
79
71
|
requirement: &id005 !ruby/object:Gem::Requirement
|
|
80
|
-
none: false
|
|
81
72
|
requirements:
|
|
82
73
|
- - ">="
|
|
83
74
|
- !ruby/object:Gem::Version
|
|
84
|
-
hash: 3
|
|
85
75
|
segments:
|
|
86
76
|
- 0
|
|
87
77
|
version: "0"
|
|
@@ -91,11 +81,9 @@ dependencies:
|
|
|
91
81
|
name: bundler
|
|
92
82
|
prerelease: false
|
|
93
83
|
requirement: &id006 !ruby/object:Gem::Requirement
|
|
94
|
-
none: false
|
|
95
84
|
requirements:
|
|
96
85
|
- - ">="
|
|
97
86
|
- !ruby/object:Gem::Version
|
|
98
|
-
hash: 3
|
|
99
87
|
segments:
|
|
100
88
|
- 0
|
|
101
89
|
version: "0"
|
|
@@ -135,6 +123,7 @@ files:
|
|
|
135
123
|
- spec/helpers_spec.rb
|
|
136
124
|
- spec/pipeline_spec.rb
|
|
137
125
|
- spec/spec_helper.rb
|
|
126
|
+
has_rdoc: true
|
|
138
127
|
homepage: http://github.com/audy/lederhosen
|
|
139
128
|
licenses: []
|
|
140
129
|
|
|
@@ -144,27 +133,23 @@ rdoc_options: []
|
|
|
144
133
|
require_paths:
|
|
145
134
|
- lib
|
|
146
135
|
required_ruby_version: !ruby/object:Gem::Requirement
|
|
147
|
-
none: false
|
|
148
136
|
requirements:
|
|
149
137
|
- - ">="
|
|
150
138
|
- !ruby/object:Gem::Version
|
|
151
|
-
hash: 3
|
|
152
139
|
segments:
|
|
153
140
|
- 0
|
|
154
141
|
version: "0"
|
|
155
142
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
156
|
-
none: false
|
|
157
143
|
requirements:
|
|
158
144
|
- - ">="
|
|
159
145
|
- !ruby/object:Gem::Version
|
|
160
|
-
hash: 3
|
|
161
146
|
segments:
|
|
162
147
|
- 0
|
|
163
148
|
version: "0"
|
|
164
149
|
requirements: []
|
|
165
150
|
|
|
166
151
|
rubyforge_project: lederhosen
|
|
167
|
-
rubygems_version: 1.
|
|
152
|
+
rubygems_version: 1.3.6
|
|
168
153
|
signing_key:
|
|
169
154
|
specification_version: 3
|
|
170
155
|
summary: 16S rRNA clustering for paired-end Illumina
|