lederhosen 0.0.0
Sign up to get free protection for your applications and to get access to all the features.
- data/.rspec +1 -0
- data/.rvmrc +1 -0
- data/Gemfile +5 -0
- data/bin/lederhosen +7 -0
- data/lederhosen.gemspec +27 -0
- data/lib/lederhosen/buffer.rb +54 -0
- data/lib/lederhosen/cli.rb +201 -0
- data/lib/lederhosen/helpers.rb +132 -0
- data/lib/lederhosen.rb +7 -0
- data/lib/version.rb +3 -0
- data/readme.md +41 -0
- data/setup.sh +16 -0
- data/spec/data/ILT_L_9_B_001_1.txt +400 -0
- data/spec/data/ILT_L_9_B_001_3.txt +400 -0
- data/spec/data/ILT_L_9_B_002_1.txt +400 -0
- data/spec/data/ILT_L_9_B_002_3.txt +400 -0
- data/spec/helpers_spec.rb +26 -0
- data/spec/pipeline_spec.rb +41 -0
- data/spec/spec_helper.rb +2 -0
- metadata +173 -0
metadata
ADDED
|
@@ -0,0 +1,173 @@
|
|
|
1
|
+
--- !ruby/object:Gem::Specification
|
|
2
|
+
name: lederhosen
|
|
3
|
+
version: !ruby/object:Gem::Version
|
|
4
|
+
hash: 31
|
|
5
|
+
prerelease:
|
|
6
|
+
segments:
|
|
7
|
+
- 0
|
|
8
|
+
- 0
|
|
9
|
+
- 0
|
|
10
|
+
version: 0.0.0
|
|
11
|
+
platform: ruby
|
|
12
|
+
authors:
|
|
13
|
+
- Austin G. Davis-Richardson
|
|
14
|
+
autorequire:
|
|
15
|
+
bindir: bin
|
|
16
|
+
cert_chain: []
|
|
17
|
+
|
|
18
|
+
date: 2012-04-13 00:00:00 Z
|
|
19
|
+
dependencies:
|
|
20
|
+
- !ruby/object:Gem::Dependency
|
|
21
|
+
name: dna
|
|
22
|
+
prerelease: false
|
|
23
|
+
requirement: &id001 !ruby/object:Gem::Requirement
|
|
24
|
+
none: false
|
|
25
|
+
requirements:
|
|
26
|
+
- - ">="
|
|
27
|
+
- !ruby/object:Gem::Version
|
|
28
|
+
hash: 3
|
|
29
|
+
segments:
|
|
30
|
+
- 0
|
|
31
|
+
version: "0"
|
|
32
|
+
type: :runtime
|
|
33
|
+
version_requirements: *id001
|
|
34
|
+
- !ruby/object:Gem::Dependency
|
|
35
|
+
name: thor
|
|
36
|
+
prerelease: false
|
|
37
|
+
requirement: &id002 !ruby/object:Gem::Requirement
|
|
38
|
+
none: false
|
|
39
|
+
requirements:
|
|
40
|
+
- - ">="
|
|
41
|
+
- !ruby/object:Gem::Version
|
|
42
|
+
hash: 3
|
|
43
|
+
segments:
|
|
44
|
+
- 0
|
|
45
|
+
version: "0"
|
|
46
|
+
type: :runtime
|
|
47
|
+
version_requirements: *id002
|
|
48
|
+
- !ruby/object:Gem::Dependency
|
|
49
|
+
name: rspec
|
|
50
|
+
prerelease: false
|
|
51
|
+
requirement: &id003 !ruby/object:Gem::Requirement
|
|
52
|
+
none: false
|
|
53
|
+
requirements:
|
|
54
|
+
- - ">="
|
|
55
|
+
- !ruby/object:Gem::Version
|
|
56
|
+
hash: 3
|
|
57
|
+
segments:
|
|
58
|
+
- 0
|
|
59
|
+
version: "0"
|
|
60
|
+
type: :runtime
|
|
61
|
+
version_requirements: *id003
|
|
62
|
+
- !ruby/object:Gem::Dependency
|
|
63
|
+
name: bundler
|
|
64
|
+
prerelease: false
|
|
65
|
+
requirement: &id004 !ruby/object:Gem::Requirement
|
|
66
|
+
none: false
|
|
67
|
+
requirements:
|
|
68
|
+
- - ">="
|
|
69
|
+
- !ruby/object:Gem::Version
|
|
70
|
+
hash: 3
|
|
71
|
+
segments:
|
|
72
|
+
- 0
|
|
73
|
+
version: "0"
|
|
74
|
+
type: :runtime
|
|
75
|
+
version_requirements: *id004
|
|
76
|
+
- !ruby/object:Gem::Dependency
|
|
77
|
+
name: progressbar
|
|
78
|
+
prerelease: false
|
|
79
|
+
requirement: &id005 !ruby/object:Gem::Requirement
|
|
80
|
+
none: false
|
|
81
|
+
requirements:
|
|
82
|
+
- - ">="
|
|
83
|
+
- !ruby/object:Gem::Version
|
|
84
|
+
hash: 3
|
|
85
|
+
segments:
|
|
86
|
+
- 0
|
|
87
|
+
version: "0"
|
|
88
|
+
type: :runtime
|
|
89
|
+
version_requirements: *id005
|
|
90
|
+
- !ruby/object:Gem::Dependency
|
|
91
|
+
name: bundler
|
|
92
|
+
prerelease: false
|
|
93
|
+
requirement: &id006 !ruby/object:Gem::Requirement
|
|
94
|
+
none: false
|
|
95
|
+
requirements:
|
|
96
|
+
- - ">="
|
|
97
|
+
- !ruby/object:Gem::Version
|
|
98
|
+
hash: 3
|
|
99
|
+
segments:
|
|
100
|
+
- 0
|
|
101
|
+
version: "0"
|
|
102
|
+
type: :runtime
|
|
103
|
+
version_requirements: *id006
|
|
104
|
+
description: Cluster 16S rRNA amplicon data sequenced by paired-end Illumina into OTUs. Also, quality control data first!
|
|
105
|
+
email:
|
|
106
|
+
- harekrishna@gmail.com
|
|
107
|
+
executables:
|
|
108
|
+
- lederhosen
|
|
109
|
+
extensions: []
|
|
110
|
+
|
|
111
|
+
extra_rdoc_files: []
|
|
112
|
+
|
|
113
|
+
files:
|
|
114
|
+
- .rspec
|
|
115
|
+
- .rvmrc
|
|
116
|
+
- Gemfile
|
|
117
|
+
- bin/lederhosen
|
|
118
|
+
- lederhosen.gemspec
|
|
119
|
+
- lib/lederhosen.rb
|
|
120
|
+
- lib/lederhosen/buffer.rb
|
|
121
|
+
- lib/lederhosen/cli.rb
|
|
122
|
+
- lib/lederhosen/helpers.rb
|
|
123
|
+
- lib/version.rb
|
|
124
|
+
- readme.md
|
|
125
|
+
- setup.sh
|
|
126
|
+
- spec/data/ILT_L_9_B_001_1.txt
|
|
127
|
+
- spec/data/ILT_L_9_B_001_3.txt
|
|
128
|
+
- spec/data/ILT_L_9_B_002_1.txt
|
|
129
|
+
- spec/data/ILT_L_9_B_002_3.txt
|
|
130
|
+
- spec/helpers_spec.rb
|
|
131
|
+
- spec/pipeline_spec.rb
|
|
132
|
+
- spec/spec_helper.rb
|
|
133
|
+
homepage: http://github.com/audy/lederhosen
|
|
134
|
+
licenses: []
|
|
135
|
+
|
|
136
|
+
post_install_message:
|
|
137
|
+
rdoc_options: []
|
|
138
|
+
|
|
139
|
+
require_paths:
|
|
140
|
+
- lib
|
|
141
|
+
required_ruby_version: !ruby/object:Gem::Requirement
|
|
142
|
+
none: false
|
|
143
|
+
requirements:
|
|
144
|
+
- - ">="
|
|
145
|
+
- !ruby/object:Gem::Version
|
|
146
|
+
hash: 3
|
|
147
|
+
segments:
|
|
148
|
+
- 0
|
|
149
|
+
version: "0"
|
|
150
|
+
required_rubygems_version: !ruby/object:Gem::Requirement
|
|
151
|
+
none: false
|
|
152
|
+
requirements:
|
|
153
|
+
- - ">="
|
|
154
|
+
- !ruby/object:Gem::Version
|
|
155
|
+
hash: 3
|
|
156
|
+
segments:
|
|
157
|
+
- 0
|
|
158
|
+
version: "0"
|
|
159
|
+
requirements: []
|
|
160
|
+
|
|
161
|
+
rubyforge_project: lederhosen
|
|
162
|
+
rubygems_version: 1.8.21
|
|
163
|
+
signing_key:
|
|
164
|
+
specification_version: 3
|
|
165
|
+
summary: 16S rRNA clustering for paired-end Illumina
|
|
166
|
+
test_files:
|
|
167
|
+
- spec/data/ILT_L_9_B_001_1.txt
|
|
168
|
+
- spec/data/ILT_L_9_B_001_3.txt
|
|
169
|
+
- spec/data/ILT_L_9_B_002_1.txt
|
|
170
|
+
- spec/data/ILT_L_9_B_002_3.txt
|
|
171
|
+
- spec/helpers_spec.rb
|
|
172
|
+
- spec/pipeline_spec.rb
|
|
173
|
+
- spec/spec_helper.rb
|