lederhosen 0.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. data/.rspec +1 -0
  2. data/.rvmrc +1 -0
  3. data/Gemfile +5 -0
  4. data/bin/lederhosen +7 -0
  5. data/lederhosen.gemspec +27 -0
  6. data/lib/lederhosen/buffer.rb +54 -0
  7. data/lib/lederhosen/cli.rb +201 -0
  8. data/lib/lederhosen/helpers.rb +132 -0
  9. data/lib/lederhosen.rb +7 -0
  10. data/lib/version.rb +3 -0
  11. data/readme.md +41 -0
  12. data/setup.sh +16 -0
  13. data/spec/data/ILT_L_9_B_001_1.txt +400 -0
  14. data/spec/data/ILT_L_9_B_001_3.txt +400 -0
  15. data/spec/data/ILT_L_9_B_002_1.txt +400 -0
  16. data/spec/data/ILT_L_9_B_002_3.txt +400 -0
  17. data/spec/helpers_spec.rb +26 -0
  18. data/spec/pipeline_spec.rb +41 -0
  19. data/spec/spec_helper.rb +2 -0
  20. metadata +173 -0
metadata ADDED
@@ -0,0 +1,173 @@
1
+ --- !ruby/object:Gem::Specification
2
+ name: lederhosen
3
+ version: !ruby/object:Gem::Version
4
+ hash: 31
5
+ prerelease:
6
+ segments:
7
+ - 0
8
+ - 0
9
+ - 0
10
+ version: 0.0.0
11
+ platform: ruby
12
+ authors:
13
+ - Austin G. Davis-Richardson
14
+ autorequire:
15
+ bindir: bin
16
+ cert_chain: []
17
+
18
+ date: 2012-04-13 00:00:00 Z
19
+ dependencies:
20
+ - !ruby/object:Gem::Dependency
21
+ name: dna
22
+ prerelease: false
23
+ requirement: &id001 !ruby/object:Gem::Requirement
24
+ none: false
25
+ requirements:
26
+ - - ">="
27
+ - !ruby/object:Gem::Version
28
+ hash: 3
29
+ segments:
30
+ - 0
31
+ version: "0"
32
+ type: :runtime
33
+ version_requirements: *id001
34
+ - !ruby/object:Gem::Dependency
35
+ name: thor
36
+ prerelease: false
37
+ requirement: &id002 !ruby/object:Gem::Requirement
38
+ none: false
39
+ requirements:
40
+ - - ">="
41
+ - !ruby/object:Gem::Version
42
+ hash: 3
43
+ segments:
44
+ - 0
45
+ version: "0"
46
+ type: :runtime
47
+ version_requirements: *id002
48
+ - !ruby/object:Gem::Dependency
49
+ name: rspec
50
+ prerelease: false
51
+ requirement: &id003 !ruby/object:Gem::Requirement
52
+ none: false
53
+ requirements:
54
+ - - ">="
55
+ - !ruby/object:Gem::Version
56
+ hash: 3
57
+ segments:
58
+ - 0
59
+ version: "0"
60
+ type: :runtime
61
+ version_requirements: *id003
62
+ - !ruby/object:Gem::Dependency
63
+ name: bundler
64
+ prerelease: false
65
+ requirement: &id004 !ruby/object:Gem::Requirement
66
+ none: false
67
+ requirements:
68
+ - - ">="
69
+ - !ruby/object:Gem::Version
70
+ hash: 3
71
+ segments:
72
+ - 0
73
+ version: "0"
74
+ type: :runtime
75
+ version_requirements: *id004
76
+ - !ruby/object:Gem::Dependency
77
+ name: progressbar
78
+ prerelease: false
79
+ requirement: &id005 !ruby/object:Gem::Requirement
80
+ none: false
81
+ requirements:
82
+ - - ">="
83
+ - !ruby/object:Gem::Version
84
+ hash: 3
85
+ segments:
86
+ - 0
87
+ version: "0"
88
+ type: :runtime
89
+ version_requirements: *id005
90
+ - !ruby/object:Gem::Dependency
91
+ name: bundler
92
+ prerelease: false
93
+ requirement: &id006 !ruby/object:Gem::Requirement
94
+ none: false
95
+ requirements:
96
+ - - ">="
97
+ - !ruby/object:Gem::Version
98
+ hash: 3
99
+ segments:
100
+ - 0
101
+ version: "0"
102
+ type: :runtime
103
+ version_requirements: *id006
104
+ description: Cluster 16S rRNA amplicon data sequenced by paired-end Illumina into OTUs. Also, quality control data first!
105
+ email:
106
+ - harekrishna@gmail.com
107
+ executables:
108
+ - lederhosen
109
+ extensions: []
110
+
111
+ extra_rdoc_files: []
112
+
113
+ files:
114
+ - .rspec
115
+ - .rvmrc
116
+ - Gemfile
117
+ - bin/lederhosen
118
+ - lederhosen.gemspec
119
+ - lib/lederhosen.rb
120
+ - lib/lederhosen/buffer.rb
121
+ - lib/lederhosen/cli.rb
122
+ - lib/lederhosen/helpers.rb
123
+ - lib/version.rb
124
+ - readme.md
125
+ - setup.sh
126
+ - spec/data/ILT_L_9_B_001_1.txt
127
+ - spec/data/ILT_L_9_B_001_3.txt
128
+ - spec/data/ILT_L_9_B_002_1.txt
129
+ - spec/data/ILT_L_9_B_002_3.txt
130
+ - spec/helpers_spec.rb
131
+ - spec/pipeline_spec.rb
132
+ - spec/spec_helper.rb
133
+ homepage: http://github.com/audy/lederhosen
134
+ licenses: []
135
+
136
+ post_install_message:
137
+ rdoc_options: []
138
+
139
+ require_paths:
140
+ - lib
141
+ required_ruby_version: !ruby/object:Gem::Requirement
142
+ none: false
143
+ requirements:
144
+ - - ">="
145
+ - !ruby/object:Gem::Version
146
+ hash: 3
147
+ segments:
148
+ - 0
149
+ version: "0"
150
+ required_rubygems_version: !ruby/object:Gem::Requirement
151
+ none: false
152
+ requirements:
153
+ - - ">="
154
+ - !ruby/object:Gem::Version
155
+ hash: 3
156
+ segments:
157
+ - 0
158
+ version: "0"
159
+ requirements: []
160
+
161
+ rubyforge_project: lederhosen
162
+ rubygems_version: 1.8.21
163
+ signing_key:
164
+ specification_version: 3
165
+ summary: 16S rRNA clustering for paired-end Illumina
166
+ test_files:
167
+ - spec/data/ILT_L_9_B_001_1.txt
168
+ - spec/data/ILT_L_9_B_001_3.txt
169
+ - spec/data/ILT_L_9_B_002_1.txt
170
+ - spec/data/ILT_L_9_B_002_3.txt
171
+ - spec/helpers_spec.rb
172
+ - spec/pipeline_spec.rb
173
+ - spec/spec_helper.rb