lazar 0.9.1 → 0.9.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +1 -1
- data/VERSION +1 -1
- data/ext/lazar/extconf.rb +3 -0
- data/ext/lazar/rinstall.R +3 -1
- data/lib/lazar.rb +2 -0
- metadata +2 -2
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA1:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 09a9d60f2daadb0a5b12244c3d0d7cd7a64a782f
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data.tar.gz: 42ade18e5037ca03ef587941e43fb9c70502d859
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 89585d53406f8371128b12b39a7c789932ad6f4debb899a8048b17cad2a59fcca986b3cb56fccf20b0a7a0b7ac0fabeb27ba735f9782a4798b5a141a421cf3ca
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data.tar.gz: f5e5f1749623ae43d62746ea8631a55acb6cb0c170e97e906b473dcf480a516cfbe5454988cb45989a742687715dc03dea87841fd96a602408f7cf3fd1a3928f
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data/README.md
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@@ -8,7 +8,7 @@ Dependencies
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lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with
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`sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
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`sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
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You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/:
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data/VERSION
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@@ -1 +1 @@
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1
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0.9.
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0.9.2
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data/ext/lazar/extconf.rb
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@@ -19,6 +19,9 @@ FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
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rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R"))
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puts `Rscript --vanilla #{rinstall} #{r_dir}`
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r_libs = Dir[File.join(r_dir,"*")].collect{|l| l.sub(r_dir, '').sub('/','')}.sort
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abort "Failed to install R packages." unless r_libs == ["caret","doMC","foreach","ggplot2","gridExtra","iterators","pls"].sort
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# create a fake Makefile
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File.open(File.join(File.dirname(__FILE__),"Makefile"),"w+") do |makefile|
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makefile.puts "all:\n\ttrue\n\ninstall:\n\ttrue\n"
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data/ext/lazar/rinstall.R
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@@ -1,6 +1,8 @@
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libdir = commandArgs(trailingOnly=TRUE)[1]
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#install.packages("Rserve",lib=libdir,configure.args=args)
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repo = "https://stat.ethz.ch/CRAN/"
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#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE)
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install.packages("iterators",lib=libdir,repos=repo);
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install.packages("foreach",lib=libdir,repos=repo);
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install.packages("gridExtra",lib=libdir,repos=repo);
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install.packages("ggplot2",lib=libdir,repos=repo);
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install.packages("pls",lib=libdir,repos=repo);
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data/lib/lazar.rb
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@@ -48,6 +48,8 @@ NR_CORES = `getconf _NPROCESSORS_ONLN`.to_i
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R = Rserve::Connection.new
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R.eval "
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suppressPackageStartupMessages({
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library(iterators,lib=\"#{rlib}\")
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library(foreach,lib=\"#{rlib}\")
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library(ggplot2,lib=\"#{rlib}\")
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library(grid,lib=\"#{rlib}\")
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library(gridExtra,lib=\"#{rlib}\")
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metadata
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@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: lazar
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version: !ruby/object:Gem::Version
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version: 0.9.
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version: 0.9.2
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platform: ruby
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authors:
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- Christoph Helma, Martin Guetlein, Andreas Maunz, Micha Rautenberg, David Vorgrimmler,
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@@ -9,7 +9,7 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2016-04-
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date: 2016-04-07 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: bundler
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