lazar 0.9.1 → 0.9.2
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- checksums.yaml +4 -4
- data/README.md +1 -1
- data/VERSION +1 -1
- data/ext/lazar/extconf.rb +3 -0
- data/ext/lazar/rinstall.R +3 -1
- data/lib/lazar.rb +2 -0
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA1:
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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metadata.gz: 09a9d60f2daadb0a5b12244c3d0d7cd7a64a782f
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4
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data.tar.gz: 42ade18e5037ca03ef587941e43fb9c70502d859
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 89585d53406f8371128b12b39a7c789932ad6f4debb899a8048b17cad2a59fcca986b3cb56fccf20b0a7a0b7ac0fabeb27ba735f9782a4798b5a141a421cf3ca
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7
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+
data.tar.gz: f5e5f1749623ae43d62746ea8631a55acb6cb0c170e97e906b473dcf480a516cfbe5454988cb45989a742687715dc03dea87841fd96a602408f7cf3fd1a3928f
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data/README.md
CHANGED
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@@ -8,7 +8,7 @@ Dependencies
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8
8
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9
9
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lazar depends on a couple of external programs and libraries. On Debian 7 "Wheezy" systems you can install them with
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10
10
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11
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-
`sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
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11
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+
`sudo apt-get install build-essential ruby ruby-dev git cmake swig r-base r-base-dev r-cran-rserve openjdk-7-jre libgsl0-dev libxml2-dev zlib1g-dev libcairo2-dev`
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12
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13
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You will also need at least mongodb version 3.0, but Debian "Wheezy" provides version 2.4. Please follow the instructions at http://docs.mongodb.org/manual/tutorial/install-mongodb-on-debian/:
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14
14
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data/VERSION
CHANGED
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@@ -1 +1 @@
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1
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-
0.9.
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1
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+
0.9.2
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data/ext/lazar/extconf.rb
CHANGED
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@@ -19,6 +19,9 @@ FileUtils.mkdir_p File.join(main_dir,"bin") # for Rserve binary
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19
19
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rinstall = File.expand_path(File.join(File.dirname(__FILE__),"rinstall.R"))
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20
20
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puts `Rscript --vanilla #{rinstall} #{r_dir}`
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21
21
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22
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+
r_libs = Dir[File.join(r_dir,"*")].collect{|l| l.sub(r_dir, '').sub('/','')}.sort
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23
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+
abort "Failed to install R packages." unless r_libs == ["caret","doMC","foreach","ggplot2","gridExtra","iterators","pls"].sort
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24
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+
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# create a fake Makefile
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File.open(File.join(File.dirname(__FILE__),"Makefile"),"w+") do |makefile|
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24
27
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makefile.puts "all:\n\ttrue\n\ninstall:\n\ttrue\n"
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data/ext/lazar/rinstall.R
CHANGED
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@@ -1,6 +1,8 @@
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1
1
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libdir = commandArgs(trailingOnly=TRUE)[1]
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2
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-
#install.packages("Rserve",lib=libdir,configure.args=args)
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3
2
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repo = "https://stat.ethz.ch/CRAN/"
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3
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#install.packages("Rserve",lib=libdir,repos=repo,dependencies=TRUE)
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4
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install.packages("iterators",lib=libdir,repos=repo);
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5
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install.packages("foreach",lib=libdir,repos=repo);
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4
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install.packages("gridExtra",lib=libdir,repos=repo);
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7
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install.packages("ggplot2",lib=libdir,repos=repo);
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6
8
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install.packages("pls",lib=libdir,repos=repo);
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data/lib/lazar.rb
CHANGED
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@@ -48,6 +48,8 @@ NR_CORES = `getconf _NPROCESSORS_ONLN`.to_i
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48
48
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R = Rserve::Connection.new
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49
49
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R.eval "
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50
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suppressPackageStartupMessages({
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51
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+
library(iterators,lib=\"#{rlib}\")
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52
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+
library(foreach,lib=\"#{rlib}\")
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51
53
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library(ggplot2,lib=\"#{rlib}\")
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52
54
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library(grid,lib=\"#{rlib}\")
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53
55
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library(gridExtra,lib=\"#{rlib}\")
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: lazar
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3
3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.9.
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4
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+
version: 0.9.2
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5
5
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platform: ruby
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6
6
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authors:
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7
7
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- Christoph Helma, Martin Guetlein, Andreas Maunz, Micha Rautenberg, David Vorgrimmler,
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@@ -9,7 +9,7 @@ authors:
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9
9
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autorequire:
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10
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bindir: bin
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11
11
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cert_chain: []
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12
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-
date: 2016-04-
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12
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+
date: 2016-04-07 00:00:00.000000000 Z
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13
13
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dependencies:
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14
14
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- !ruby/object:Gem::Dependency
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15
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name: bundler
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