lazar-gui 1.3.1 → 1.4.0.pre.0
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- checksums.yaml +4 -4
- data/.gitignore +3 -0
- data/FAQ.md +9 -6
- data/Gemfile +2 -2
- data/README.md +19 -8
- data/VERSION +1 -1
- data/api/api.json +1000 -0
- data/application.rb +269 -206
- data/config.ru +7 -2
- data/docker/Dockerfile +73 -0
- data/docker/start.sh +12 -0
- data/docker/swagger.html +107 -0
- data/helper.rb +46 -1
- data/lazar-gui.gemspec +6 -6
- data/lib/api.rb +29 -0
- data/lib/compound.rb +68 -0
- data/lib/dataset.rb +33 -0
- data/lib/endpoint.rb +23 -0
- data/lib/feature.rb +29 -0
- data/lib/model.rb +152 -0
- data/lib/report.rb +29 -0
- data/lib/substance.rb +34 -0
- data/lib/swagger.rb +3 -0
- data/lib/validation.rb +67 -0
- data/public/fonts/FontAwesome.otf +0 -0
- data/public/fonts/fontawesome-webfont.eot +0 -0
- data/public/fonts/fontawesome-webfont.svg +2671 -0
- data/public/fonts/fontawesome-webfont.ttf +0 -0
- data/public/fonts/fontawesome-webfont.woff +0 -0
- data/public/fonts/fontawesome-webfont.woff2 +0 -0
- data/public/images/orn-logo.jpg +0 -0
- data/public/javascripts/bootstrap.js +3944 -0
- data/public/javascripts/google_analytics_lazar.js +2 -2
- data/public/javascripts/jquery.min.js +2 -0
- data/public/javascripts/lazar-gui.js +313 -0
- data/public/javascripts/pagination.min.js +11 -0
- data/public/javascripts/popper.min.js +5 -0
- data/public/stylesheets/bootstrap.min.css +7 -0
- data/public/stylesheets/bootstrap.min.css.map +1 -0
- data/public/stylesheets/font-awesome.min.css +4 -0
- data/public/stylesheets/pagination.css +1 -0
- data/qmrf_report.rb +64 -14
- data/task.rb +68 -0
- data/unicorn.rb +0 -1
- data/views/batch.haml +48 -107
- data/views/details.haml +10 -2
- data/views/error.haml +4 -5
- data/views/faq.haml +6 -2
- data/views/help.haml +68 -0
- data/views/info.haml +3 -2
- data/views/layout.haml +68 -78
- data/views/model_details.haml +179 -144
- data/views/neighbors.haml +98 -80
- data/views/predict.haml +43 -178
- data/views/prediction.haml +109 -102
- data/views/style.scss +44 -37
- data/views/upload.haml +28 -0
- metadata +51 -105
- data/public/css/bootstrap-theme.min.css +0 -5
- data/public/css/bootstrap.min.css +0 -5
- data/public/css/bootstrap.vertical-tabs.min.css +0 -1
- data/public/css/images/black-asc.gif +0 -0
- data/public/css/images/black-desc.gif +0 -0
- data/public/css/images/black-unsorted.gif +0 -0
- data/public/css/images/bootstrap-black-unsorted.png +0 -0
- data/public/css/images/bootstrap-white-unsorted.png +0 -0
- data/public/css/images/dragtable-handle.png +0 -0
- data/public/css/images/dragtable-handle.svg +0 -7
- data/public/css/images/dropbox-asc-hovered.png +0 -0
- data/public/css/images/dropbox-asc.png +0 -0
- data/public/css/images/dropbox-desc-hovered.png +0 -0
- data/public/css/images/dropbox-desc.png +0 -0
- data/public/css/images/first.png +0 -0
- data/public/css/images/green-asc.gif +0 -0
- data/public/css/images/green-desc.gif +0 -0
- data/public/css/images/green-header.gif +0 -0
- data/public/css/images/green-unsorted.gif +0 -0
- data/public/css/images/ice-asc.gif +0 -0
- data/public/css/images/ice-desc.gif +0 -0
- data/public/css/images/ice-unsorted.gif +0 -0
- data/public/css/images/last.png +0 -0
- data/public/css/images/loading.gif +0 -0
- data/public/css/images/metro-black-asc.png +0 -0
- data/public/css/images/metro-black-desc.png +0 -0
- data/public/css/images/metro-loading.gif +0 -0
- data/public/css/images/metro-unsorted.png +0 -0
- data/public/css/images/metro-white-asc.png +0 -0
- data/public/css/images/metro-white-desc.png +0 -0
- data/public/css/images/next.png +0 -0
- data/public/css/images/prev.png +0 -0
- data/public/css/images/white-asc.gif +0 -0
- data/public/css/images/white-desc.gif +0 -0
- data/public/css/images/white-unsorted.gif +0 -0
- data/public/css/jquery-ui.css +0 -1225
- data/public/css/jquery-ui.theme.min.css +0 -5
- data/public/css/theme.bootstrap.css +0 -158
- data/public/css/theme.bootstrap.min.css +0 -1
- data/public/css/theme.default.min.css +0 -1
- data/public/fonts/glyphicons-halflings-regular.eot +0 -0
- data/public/fonts/glyphicons-halflings-regular.svg +0 -288
- data/public/fonts/glyphicons-halflings-regular.ttf +0 -0
- data/public/fonts/glyphicons-halflings-regular.woff +0 -0
- data/public/fonts/glyphicons-halflings-regular.woff2 +0 -0
- data/public/images/Email.png +0 -0
- data/public/images/Facebook.png +0 -0
- data/public/images/Google+.png +0 -0
- data/public/images/LinkedIn.png +0 -0
- data/public/images/OpenToxEuro2013_small.png +0 -0
- data/public/images/Twitter.png +0 -0
- data/public/images/arrow_down_float.png +0 -0
- data/public/images/arrow_left_float.png +0 -0
- data/public/images/arrow_right_float.png +0 -0
- data/public/images/arrow_up_float.png +0 -0
- data/public/images/asc.gif +0 -0
- data/public/images/bg.gif +0 -0
- data/public/images/desc.gif +0 -0
- data/public/images/gray_jean.png +0 -0
- data/public/images/info_white.png +0 -0
- data/public/javascripts/bootstrap.min.js +0 -7
- data/public/javascripts/jquery-1.11.2.min.js +0 -4
- data/public/javascripts/jquery-1.8.3.min.js +0 -2
- data/public/javascripts/jquery-ui-1.10.3.custom.min.js +0 -6
- data/public/javascripts/jquery.bpopup.min.js +0 -7
- data/public/javascripts/jquery.tablesorter.min.js +0 -2
- data/public/javascripts/jquery.tablesorter.widgets.js +0 -2678
- data/public/javascripts/jquery.tools.min.js +0 -5
- data/public/rect.png +0 -0
- data/test/lazarweb.rb +0 -193
- data/test/setup.rb +0 -7
- data/views/significant_fragments.haml +0 -66
data/views/style.scss
CHANGED
@@ -1,57 +1,43 @@
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/*@media (min-width: 320px){
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.page-header{
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img.media-object{
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}
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//img.media-object{
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// margin-left:0;
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//}
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background-color: #fff;
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padding:10px 0 10px 0;
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margin: 0;
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text-align:left;
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//text-align:left;
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//display:inline-block;
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width:100%;
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}
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}
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@media (min-width: 480px){
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.page-header{
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img.media-object{
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}
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//img.media-object{
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// margin-left:1em;
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//}
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background-color: #fff;
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padding:20px 0 20px 0;
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margin: 0;
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text-align:center;
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//text-align:center;
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//display:inline-block;
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width:100%;
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}
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}*/
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.page-header {
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background-color: #fff;
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}
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body {
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background-color:#E7E7E7;
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}
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table.table-borderless tbody tr td{
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border-top: none;
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}
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h4.head-back, h5.head-back{
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background-color: #E7E7E7;
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}
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.nav-tabs {
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background-color: #E7E7E7;
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li.active a:hover {
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background-color: #f5f5f5;
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}
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li a {
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//height: 7em;
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}
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}
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img {
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max-width: 100%;
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max-height: 100%;
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}
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.plot {
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height:
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width:
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height: 50%;
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width: 50%;
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}
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.faq {
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text-align: block;
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@@ -62,12 +48,6 @@ img {
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.faq h1 {
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text-align: center;
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}
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.tablesorter-bootstrap thead .sorter-false {
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cursor: default;
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}
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.tablesorter-bootstrap thead {
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background-color: #E7E7E7;
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}
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ul.share-buttons{
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list-style: none;
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}
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width: 30px;
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padding-right: 5px;
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}
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.footer{
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margin-top:3em;
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}
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.single-batch{
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table-layout: fixed;
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width: 100%;
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}
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.help table, .help th, .help td {
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background-color: white;
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border: 1px solid black;
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border-bottom: none;
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width: 100%;
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}
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.help th, .help td {
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padding: 10px;
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text-align: left;
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}
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/*img.supporters {
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width: 150px;
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height: 150px;
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}*/
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supporters{
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background-color: #fff;
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img{
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width: 200px;
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margin: 1em;
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}
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}
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.
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.table td.fit,
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.table th.fit {
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white-space: nowrap;
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width: 1%;
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}
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.modal-body p {
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word-wrap: break-word;
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}
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data/views/upload.haml
ADDED
@@ -0,0 +1,28 @@
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%div.card
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%a.btn.btn-outline-info{:href => "//#{$host_with_port}/predict"}
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%span.fa.fa-caret-left{:aria=>{:hidden=>"true"}}
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New Prediction
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%div.card.bg-light{:id=>"uploadDataset"}
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%div.card-body
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%h3.card-title="Processing file #{@filename} to dataset."
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%img.h2{:src=>"/images/wait30trans.gif", :id=>"circle_upload", :class=>"circle", :alt=>"processing"}
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:javascript
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$(document).ready(function() {
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var aClient = new HttpClient();
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aClient.post('//#{$host_with_port}/predict', 'models=#{@models}&batchfile=#{@filename}', function(res1) {
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var contentType = res1.getResponseHeader('content-type');
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if (contentType == "application/json"){
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var response = JSON.parse(res1.responseText);
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} else {
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var response = res1.responseText;
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}
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if (res1.status == 200 && response['models'] && response['dataset_id']){
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aClient.post('//#{$host_with_port}/predict', 'models='+response['models']+'&dataset_id='+response['dataset_id'], function(res2) {
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$("body").html(res2.responseText);
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});
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}
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if (res1.status == 200 && contentType == "text/html"){
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$("body").html(response);
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}
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});
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});
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metadata
CHANGED
@@ -1,7 +1,7 @@
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--- !ruby/object:Gem::Specification
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name: lazar-gui
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version: !ruby/object:Gem::Version
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version: 1.
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version: 1.4.0.pre.0
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platform: ruby
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authors:
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- Christoph Helma
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@@ -9,38 +9,38 @@ authors:
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autorequire:
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bindir: bin
|
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cert_chain: []
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date:
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date: 2019-09-02 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: lazar
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - "~>"
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- !ruby/object:Gem::Version
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version: '
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version: '1.1'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - "~>"
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version: '
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version: '1.1'
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- !ruby/object:Gem::Dependency
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name:
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name: qsar-report
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - "~>"
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- !ruby/object:Gem::Version
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version: '0'
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version: '1.0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - "
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- - "~>"
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|
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version: '0'
|
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version: '1.0'
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- !ruby/object:Gem::Dependency
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name: sinatra
|
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name: sinatra
|
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requirement: !ruby/object:Gem::Requirement
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requirements:
|
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- - ">="
|
@@ -110,34 +110,20 @@ dependencies:
|
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110
110
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- !ruby/object:Gem::Version
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version: '0'
|
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- !ruby/object:Gem::Dependency
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name:
|
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requirement: !ruby/object:Gem::Requirement
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requirements:
|
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-
- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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name: gem-path
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name: sinatra-reloader
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requirement: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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type: :
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type: :development
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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requirements:
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- - ">="
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- !ruby/object:Gem::Version
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version: '0'
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description: Graphical User Interface for Lazar
|
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description: Graphical User Interface for Lazar Toxicity Predictions
|
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email:
|
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128
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- helma@in-silico.ch
|
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129
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- gebele@in-silico.ch
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@@ -153,93 +139,50 @@ files:
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- LICENSE.md
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- README.md
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141
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- VERSION
|
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- api/api.json
|
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- application.rb
|
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- bin/lazar-start
|
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- bin/lazar-start.sh
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- bin/lazar-stop
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147
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- bin/lazar-stop.sh
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- config.ru
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- docker/Dockerfile
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- docker/start.sh
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- docker/swagger.html
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- helper.rb
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- lazar-gui.gemspec
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- public/
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