lazar-gui 1.0.2 → 1.1.3

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Files changed (185) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +0 -1
  3. data/FAQ.md +14 -25
  4. data/Gemfile +3 -1
  5. data/LICENSE.md +596 -0
  6. data/VERSION +1 -1
  7. data/application.rb +71 -191
  8. data/config.ru +2 -1
  9. data/helper.rb +0 -215
  10. data/lazar-gui.gemspec +7 -7
  11. data/public/css/bootstrap.vertical-tabs.min.css +1 -0
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- Si(wd);if(A(wd,123))throw new uC(yn(wd));throw wd;}if(-1>this.f)throw new uC("incorrect port: "+this.f);}t(448,1,$h,zC);_.tS=function(){return yC(this)};_.b=null;_.c=null;_.d=null;_.e=null;_.f=-1;_.i=null;_.j=null;_.k=null;_.n=null;_.o=null;var wC;t(449,1,{});function GC(a,b,c){var d,e;for(d=new HC(a.Fe().b);IC(d.b);)if(a=d.c=Ni(d.b),e=a.Hf(),null==b?null==e:In(b,e))return c&&(a=new JC(a.Hf(),a.If()),KC(d)),a;return null}t(453,1,ji);_.Ee=function(a){return!!GC(this,a,!1)};
258
- _.eQ=function(a){var b,c;if(a===this)return!0;if(!A(a,134)||this.Ke()!=a.Ke())return!1;for(a=new HC(a.Fe().b);IC(a.b);)if(b=a.c=Ni(a.b),c=b.Hf(),b=b.If(),!this.Ee(c)||!LC(b,this.Ge(c)))return!1;return!0};_.Ge=function(a){a=GC(this,a,!1);return!a?null:a.If()};_.hC=function(){var a,b,c;c=0;for(b=new HC(this.Fe().b);IC(b.b);)a=b.c=Ni(b.b),c+=a.hC(),c=~~c;return c};_.He=function(){return 0==this.Ke()};_.Ie=function(){throw new MC("Put not supported on this map");};
259
- _.Je=function(a){a=GC(this,a,!0);return!a?null:a.If()};_.Ke=function(){return this.Fe().b.e};_.tS=function(){var a,b,c,d;d="{";a=!1;for(c=new HC(this.Fe().b);IC(c.b);)b=c.c=Ni(c.b),a?d+=za:a=!0,d+=l+b.Hf(),d+=rb,d+=l+b.If();return d+"}"};function sy(a){a.b=[];a.f={};a.d=!1;a.c=null;a.e=0}function $u(a,b){var c;if(null==b)c=a.d;else if(A(b,1))c=mb+b in a.f;else a:{c=a.Ne(b);if(c=a.b[c])for(var d=0,e=c.length;d<e;++d)if(a.Me(b,c[d].Hf())){c=!0;break a}c=!1}return c}
260
- function jj(a,b){return null==b?a.c:A(b,1)?a.f[mb+b]:NC(a,b,a.Ne(b))}function NC(a,b,c){if(c=a.b[c])for(var d=0,e=c.length;d<e;++d){var f=c[d];if(a.Me(b,f.Hf()))return f.If()}return null}function z(a,b,c){return null==b?OC(a,c):A(b,1)?PC(a,b,c):QC(a,b,c,a.Ne(b))}function QC(a,b,c,d){var e=a.b[d];if(e)for(var f=0,g=e.length;f<g;++f){if(d=e[f],a.Me(b,d.Hf()))return a=d.If(),d.Jf(c),a}else e=a.b[d]=[];d=new JC(b,c);e.push(d);++a.e;return null}
261
- function OC(a,b){var c;c=a.c;a.c=b;a.d||(a.d=!0,++a.e);return c}function PC(a,b,c){var d,e=a.f,b=mb+b;b in e?d=e[b]:++a.e;e[b]=c;return d}function Vi(a,b){var c;if(null==b)c=a.c,a.c=null,a.d&&(a.d=!1,--a.e);else if(A(b,1)){var d,e=a.f;c=mb+b;c in e&&(d=e[c],--a.e,delete e[c]);c=d}else a:{c=a.Ne(b);if(d=a.b[c])for(var e=0,f=d.length;e<f;++e){var g=d[e];if(a.Me(b,g.Hf())){1==d.length?delete a.b[c]:d.splice(e,1);--a.e;c=g.If();break a}}c=null}return c}t(452,453,ji);_.Ee=function(a){return $u(this,a)};
262
- _.Fe=function(){return new RC(this)};_.Me=function(a,b){return this.Le(a,b)};_.Ge=function(a){return jj(this,a)};_.Ie=function(a,b){return z(this,a,b)};_.Je=function(a){return Vi(this,a)};_.Ke=function(){return this.e};_.b=null;_.c=null;_.d=!1;_.e=0;_.f=null;function Ki(){sy(this)}t(451,452,xi,Ki);_.Le=function(a,b){return Ls(a)===Ls(b)||null!=a&&In(a,b)};_.Ne=function(a){return~~Ln(a)};function xC(){sy(this)}t(450,451,xi,xC);function SC(){An()}t(454,100,wi,SC);
263
- function TC(a){var b,c;b=0;for(c=a.b;c<a.j;){c=UC(a,c);if(c>=a.j)break;c=VC(a,c);++b}return b}function WC(a,b){var c;for(c=0;c<a.c.length;++c)if(a.c[c]==b)return!0;return!1}function XC(a){var b;a.b=0<=a.k&&!a.e?a.k:UC(a,a.b);a.e=!1;a.k=-1;if(a.b>=a.j)throw new SC;b=a.b;a.b=VC(a,a.b);return a.o.substr(b,a.b-b)}
264
- function VC(a,b){var c,d;for(d=b;d<a.j;)if(a.f){c=YC(a.o,d,a.o.length);if(c<=a.i&&WC(a,c))break;d+=65536<=c?2:1}else{c=a.o.charCodeAt(d);if(c<=a.i&&0<=jo(a.d,ko(c)))break;++d}a.n&&b==d&&(a.f?(c=YC(a.o,d,a.o.length),c<=a.i&&WC(a,c)&&(d+=65536<=c?2:1)):(c=a.o.charCodeAt(d),c<=a.i&&0<=jo(a.d,ko(c))&&++d));return d}
265
- function UC(a,b){var c,d;if(null==a.d)throw new so;for(d=b;!a.n&&d<a.j;)if(a.f){c=YC(a.o,d,a.o.length);if(c>a.i||!WC(a,c))break;d+=65536<=c?2:1}else{c=a.o.charCodeAt(d);if(c>a.i||0>jo(a.d,ko(c)))break;++d}return d}function ZC(a){$C.call(this,a," \t\n\r\u000c",!1)}function aD(a){$C.call(this,a,ya,!1)}
266
- function $C(a,b,c){this.b=0;this.k=-1;this.e=!1;this.o=a;this.j=a.length;this.d=b;this.n=c;var d;if(null==this.d)this.i=0;else{for(c=b=d=0;c<this.d.length;c+=65536<=a?2:1)a=this.d.charCodeAt(c),55296<=a&&57343>=a&&(a=YC(this.d,c,this.d.length),this.f=!0),d<a&&(d=a),++b;this.i=d;if(this.f){this.c=y(I,m,-1,b,1);for(c=0,d=0;c<b;++c,d+=65536<=a?2:1)a=YC(this.d,d,this.d.length),this.c[c]=a}}}t(455,1,{},ZC,aD,$C);_.b=0;_.c=null;_.d=null;_.e=!1;_.f=!1;_.i=0;_.j=0;_.k=0;_.n=!1;_.o=null;
267
- function bD(a,b){var c,d,e,f,g;c=l;if(null!=b){d=0;for(f=0,g=b.length;f<g;++f){e=b[f];if(A(e,1)&&(e=On(e),!(Mn(),!/[^,:{}\[\]0-9.\-+Eaeflnr-u \n\r\t]/.test(e.replace(/"(\\.|[^"\\])*"/g,l)))))return;c+=e;d<b.length-1&&(c+=ya);++d}}typeof a==ue?($wnd.alert("A JavaScript function name is expected, not a the function itself"),c=$wnd.eval(Qc+c+Tc),a.apply(c)):(evalString=a+ua+c+");",$wnd.eval(evalString))}
268
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269
- function fD(){fD=x;gD=H(Os,s,1,["Copyright (c) 2013, Novartis Institutes for BioMedical Research Inc. and Bruno Bienfait.","All rights reserved."]);hD=(BA(),EA);iD=QA(hD);jD=y(kD,s,88,23,0);lD=y(Os,s,1,23,0);mD=y(kD,s,88,7,0);nD=null!=(rC(),sC[Re]);oD=y(pD,s,92,100,0);qD=y(rD,s,93,100,0)}function sD(a){var b;if(a.Gb)b=tD(a,1)+tb+tD(a,2)+tb+tD(a,3);else if(b=tD(a,0),0<b.length){var c=new uD(a.$);aj(a.ab.b,c)}return b}
270
- function vD(a,b){var c,d;c=b.b;if(G(c,(wD(),xD).c))$q(yD(a));else if(G(c,zD.c))$q(ar(a));else if(G(c,AD.c))a.wb&&(c=a.v,d=(!a.xb&&(a.xb=new br(a)),a.xb),c.b=d,cr(),dr(c));else if(G(c,mg)){7!=a.P&&(a.Q=lh);d=b.d;d=Ht(d,kh);c=jt(d,a.Q);var e=!ht(c,lh)?ct(c):c;!ht(e,rh)&&BD(a.$,O(c));CD(a);a.nb=!0;DD(a);a.P=7;a.Q=d}else G(c,ug)||(G(c,je)?ED(a):FD(a,c))}
271
- function GD(a,b,c,d){var e,f,g,j,h,n,o,q,r;if(!a.rb&&(j=c-b+1,!(0>=j||b>a.vb||c>a.vb))){h=a.C;e=y(HD,s,-1,4,1);o=y(HD,s,-1,99,1);g=r=q=0;for(f=b;f<=c;++f)ID(a.gb[f],e),q+=e[2],r+=e[3],e[3]>g&&(g=e[3]),o[f]=e[2],2==d&&(o[f]=e[3]);a.A&&(q+=25*(j+1),r+=25*(j+1),g+=25);(0==a.D.c||0==a.D.b)&&(a.D=Qz(a));0==a.D.c&&(a.D.c=400);0==a.D.b&&(a.D.b=300);n=f=1;e=a.D.c;j=a.D.b;a.A||(e-=a.Z,j-=3*a.Z);1==d||3==d?e=~~((e-48)/2):2==d&&(j=~~(j/2));q>=e&&(f=e/q);g>=j&&(n=j/g);g=0;a.A&&(a.C=f<n?f:n,g=25*e/q,2==d&&(g=
272
- 25*j/r));for(f=b;f<=c;++f)2==d?o[f]=o[f]*j/r:o[f]=o[f]*e/q;q=-e/2;r=0;1==d?q=-e-24:3==d?q=24:2==d&&(q=0,r=-j);for(f=b;f<=c;++f){if(a.A){for(b=1;b<=a.gb[f].u;++b)a.gb[f].K[b]*=a.C,a.gb[f].N[b]*=a.C;JD(a.gb[f])}2==d?r+=o[f]/2+g:q+=o[f]/2+g;for(b=1;b<=a.gb[f].u;++b)a.gb[f].K[b]+=q,a.gb[f].N[b]+=r;2==d?r+=o[f]/2:q+=o[f]/2;a.A||KD(a.gb[f])}a.C*=h}}
273
- function LD(a){var b;a.nb=!0;a.d=202;a.qb=!1;if(0!=a.vb){a.nb=!0;a.i=!0;for(b=a.f;b<a.vb;++b)a.gb[b]=a.gb[b+1];--a.vb;a.f=a.vb;0<a.vb?a.$=a.gb[a.f]:(a.$=new MD(a),a.$.s=0);null!=a.tb&&bD(a.tb,null)}}function ND(a,b){var c,d,e,f;f=new KB;d=Dc;c="MOL";e="MOL or SDF";b&&(d="SMIRKS",e=c=yc);d=new CB(Pb+d);var g=(wD(),xD).c;d.d=g;IB(f,d);Vz(d.e,a);d=new CB(Pb+c);d.d=zD.c;Vz(d.e,a);IB(f,d);a.wb&&(IB(f,new CB(Ba)),c=a.yb,null==c&&(c="Paste "+e),d=new CB(c),d.d=AD.c,Vz(d.e,a),IB(f,d));Uy(a,f);return f}
274
- function OD(a,b,c,d){var e,f,g,j,h,n,o;f=100*d+c;h=(c-1)*(a.Z+a.T);g=(d-1)*(a.Z+a.T);1==c&&2<d&&(g-=2*a.Z);X(b,hD);a.pb?(f==a.d&&X(b,RA(hD)),qB(b,h,g,a.Z,a.Z),X(b,(BA(),GA)),PD(b,h,g,a.Z-1,a.Z-1)):f==a.d?pB(b,h+1,g+1,a.Z,a.Z,!1):pB(b,h,g,a.Z,a.Z,!0);if(!(1301==f&&!a.Fb||107==f&&!a.Db))if(201!=f||a.Pb)if(103!=f||a.kb)if(!(105==f&&!a.ub&&!a.r)&&(109!=f||a.Gb))if(c=~~(a.Z/4),3>d)switch(X(b,(BA(),IA)),f){case 101:X(b,LA);f=h+3;d=g+3;c=a.Z-6;e=a.Z-6;QD(b,!0);RD(b,SD(b,f,d,c,e));X(b,IA);f=h+3;d=g+3;c=a.Z-
275
- 6;e=a.Z-6;b.o&&(QD(b,!1),RD(b,SD(b,f,d,c,e)));TD(b,h+6,g+6,a.Z-12,a.Z-12,-35,-110);qB(b,h+9,g+9,2,4);qB(b,h+a.Z-10,g+9,2,4);0.04>Math.random()&&(X(b,JA),qB(b,h+10,g+18,4,4));0.96<Math.random()&&(X(b,LA),qB(b,h+a.Z-10,g+8,2,3));break;case 112:d=h+c;e=h+a.Z-c;j=h+~~(a.Z/2);Y(b,d,g+a.Z-c,j,g+~~(a.Z/2));Y(b,h+~~(a.Z/2),g+~~(a.Z/2),e,g+a.Z-c);n=g+a.Z-c;f=~~(a.Z/24);Y(b,j-f,n,j-2*f,n);Y(b,j+f,n,j+2*f,n);X(b,MA);Y(b,d,g+c,j,g+~~(a.Z/2));Y(b,h+~~(a.Z/2),g+~~(a.Z/2),e,g+c);n=g+c;Y(b,j-f,n,j-2*f,n);Y(b,j+f,
276
- n,j+2*f,n);X(b,IA);break;case 107:X(b,KA);qB(b,h+4,g+4,a.Z-8,a.Z-8);X(b,IA);PD(b,h+4,g+4,a.Z-8,a.Z-8);TD(b,h+6,g+6,a.Z-11,a.Z-12,-35,-110);qB(b,h+9,g+9,2,4);qB(b,h+a.Z-10,g+9,2,4);break;case 108:f=~~(a.Z/4);Y(b,h+f,g+a.Z-f,h+a.Z-f,g+f);f=~~(a.Z/2)-f;d=g+~~(2*a.Z/3);h+=~~(a.Z/2);Y(b,h,d,h+f,d);g+=~~(a.Z/3);a=h-f;Y(b,a,g,h,g);h=~~((a+h)/2);g-=~~(f/2);Y(b,h,g,h,g+f);break;case 113:a.Jb&&(f=~~(c/2),d=a.Z-2*c-2*f,c=h+f+c,e=g+(c-h),X(b,OA),PD(b,c,e,d,d),X(b,HA),j=h+~~(a.Z/2),a=g+~~(a.Z/2),n=c+d,o=g+f,g=
277
- o+f,Y(b,c,g,j,o),Y(b,j,o,n,g),g=e+d+f,o=g+f,Y(b,c,g,j,o),Y(b,j,o,n,g),h+=f,n=h+f,g=e+d,Y(b,n,e,h,a),Y(b,h,a,n,g),h=c+d+f,n=h+f,Y(b,h,e,n,a),Y(b,n,a,h,g));break;case 110:UD(b,h,g,a.Z,!0);break;case 111:UD(b,h,g,a.Z,!1);break;case 109:Y(b,h+c,g+~~(a.Z/2),h+a.Z-c,g+~~(a.Z/2));Y(b,h+a.Z-c,g+~~(a.Z/2),h+a.Z-~~(3*c/2),g+~~(a.Z/2)+~~(c/2));Y(b,h+a.Z-c,g+~~(a.Z/2),h+a.Z-~~(3*c/2),g+~~(a.Z/2)-~~(c/2));break;case 102:X(b,CA);qB(b,h+3,g+5,a.Z-7,a.Z-11);X(b,IA);PD(b,h+3,g+5,a.Z-7,a.Z-11);break;case 103:X(b,hD);
278
- a.qb&&pB(b,h+1,g+1,a.Z,a.Z,!1);X(b,IA);VD(a,b,h,g,"NEW");break;case 106:X(b,JA);Y(b,h+7,g+7,h+a.Z-7,g+a.Z-7);Y(b,h+8,g+7,h+a.Z-6,g+a.Z-7);Y(b,h+7,g+a.Z-7,h+a.Z-7,g+7);Y(b,h+8,g+a.Z-7,h+a.Z-6,g+7);X(b,IA);Y(b,h+c,g+~~(a.Z/2),h+12,g+~~(a.Z/2));VD(a,b,h+6,g,rc);break;case 104:X(b,JA);Y(b,h+7,g+7,h+a.Z-7,g+a.Z-7);Y(b,h+8,g+7,h+a.Z-6,g+a.Z-7);Y(b,h+7,g+a.Z-7,h+a.Z-7,g+7);Y(b,h+8,g+a.Z-7,h+a.Z-6,g+7);X(b,IA);break;case 105:a.Ob?(X(b,NA),Y(b,h+11,g+5,h+9,g+9),Y(b,h+9,g+9,h+4,g+9),Y(b,h+4,g+9,h+8,g+12),Y(b,
279
- h+8,g+12,h+6,g+18),Y(b,h+6,g+18,h+11,g+15),Y(b,h+12,g+5,h+14,g+9),Y(b,h+14,g+9,h+19,g+9),Y(b,h+19,g+9,h+15,g+12),Y(b,h+15,g+12,h+17,g+18),Y(b,h+17,g+18,h+12,g+15),X(b,IA)):VD(a,b,h,g,"123");break;case 114:X(b,PA);f=a.Z-8;d=h+~~((a.Z-f)/2);c=g+~~((a.Z-f)/2);qB(b,d,c,f,f);X(b,IA);WD(a,b,h,g,CA,"i");break;case 201:Y(b,h+c,g+~~(a.Z/2),h+a.Z-c,g+~~(a.Z/2)+2);Y(b,h+c,g+~~(a.Z/2),h+a.Z-c,g+~~(a.Z/2)-2);Y(b,h+a.Z-c,g+~~(a.Z/2)+2,h+a.Z-c,g+~~(a.Z/2)-2);break;case 202:Y(b,h+c,g+~~(a.Z/2),h+a.Z-c,g+~~(a.Z/2));
280
- break;case 203:Y(b,h+c,g+~~(a.Z/2)-2,h+a.Z-c,g+~~(a.Z/2)-2);Y(b,h+c,g+~~(a.Z/2)+2,h+a.Z-c,g+~~(a.Z/2)+2);break;case 204:Y(b,h+c,g+~~(a.Z/2),h+a.Z-c,g+~~(a.Z/2));Y(b,h+c,g+~~(a.Z/2)-3,h+a.Z-c,g+~~(a.Z/2)-3);Y(b,h+c,g+~~(a.Z/2)+3,h+a.Z-c,g+~~(a.Z/2)+3);break;case 205:Y(b,h+~~(c/2),g+2*c+~~(c/3),h+3*~~(c/2),g+2*c-~~(c/3));Y(b,h+3*~~(c/2),g+2*c-~~(c/3),h+5*~~(c/2),g+2*c+~~(c/3));Y(b,h+5*~~(c/2),g+2*c+~~(c/3),h+7*~~(c/2),g+2*c-~~(c/3));break;case 206:XD(a,b,h,g+2,3);break;case 207:XD(a,b,h,g,4);break;
281
- case 208:XD(a,b,h,g,5);break;case 209:XD(a,b,h,g,1);break;case 210:XD(a,b,h,g,6);break;case 211:XD(a,b,h,g,7);break;case 212:XD(a,b,h,g,8);break;case 213:VD(a,b,h,g,"FG"),a.G=new FB(h,g)}else d=3,301==f?d=3:401==f?d=4:501==f?d=5:601==f?d=8:701==f?d=9:801==f?d=10:901==f?d=11:1001==f?d=12:1101==f?d=7:1201==f?d=18:1301==f&&(d=19),(a.Sb||1201!=f)&&null!=lD[d]&&WD(a,b,h,g,jD[d],lD[d])}
282
- function YD(a){var b,c,d;a.lb&&(null==a.K&&(a.K=l),d=a.J.b,c=a.D.c-a.Z,b=a.Z,X(d,hD),qB(d,0,0,c,b),a.pb?(X(d,(BA(),GA)),PD(d,-1,0,c,b-1)):(X(d,iD),Y(d,0,0,c-1-2,0),X(d,RA(hD)),Y(d,0,b-1,c-1,b-1),Y(d,c-1,0,c-1,b-1)),ZD(d,a.Y),X(d,(BA(),IA)),-1!=a.K.toLowerCase().indexOf(ke)&&X(d,JA),$D(d,a.K,10,15),aE(a.Vb,a.J,a.Z,a.D.b-a.Z))}
283
- function bE(a){var b,c,d,e;if(a.mb){d=a.R.b;c=a.Z;b=a.D.b-2*a.Z-a.T;X(d,hD);qB(d,0,0,c,b);a.pb?(X(d,(BA(),GA)),Y(d,0,b-1,c,b-1),e=cE*(a.Z+a.T)+2,Y(d,0,e,c,e),Y(d,0,e,0,b),Y(d,a.Z-1,e,a.Z-1,b-a.Z)):(X(d,iD),Y(d,0,0,0,b-1),Y(d,0,cE*a.Z,b-1,cE*a.Z),X(d,RA(hD)),Y(d,c-1,0,c-1,b-1-a.Z),Y(d,0,b-1,c-1,b-1));for(b=3;b<=cE+2;++b)OD(a,d,1,b);aE(a.Vb,a.R,0,2*a.Z+a.T)}}
284
- function dE(a){var b,c,d,e;if(a.nb){e=a.db.b;c=a.D.c-a.Z;b=a.D.b-3*a.Z-a.T;X(e,a.u);qB(e,0,0,c,b);d=a.eb?(NB(),QB):(NB(),SB);if((NB(),OB)==(NB(),OB))d==QB?e.b=l:e.b=Ag;d=new $z(a.fb);(e.o=d)&&d&&(e.c='stroke-width="'+d.f+ga);for(d=1;d<=a.vb;++d){var f=a.gb[d],g=e,j=void 0,h=void 0,n=void 0,o=void 0,q=void 0,r=n=void 0,u=void 0,v=void 0,D=void 0,E=D=q=o=void 0,J=void 0,R=void 0,sb=o=v=q=j=void 0,W=o=j=void 0,M=h=q=h=void 0,da=D=R=void 0,J=h=r=q=q=E=u=M=j=W=W=v=M=J=r=W=M=u=da=r=J=n=R=o=v=v=E=J=void 0,
285
- D=R=1,n=2,da=3;f.x&&(JD(f),GD(f.o,1,f.o.vb,0),f.x=!1);n*=f.o.C;da*=f.o.C;j=1;0.7>f.o.C&&(j=1.2);j=O(N(eE(13*f.o.C*j)));fE(f.o,j);f.o.B&&(X(g,(BA(),IA)),PD(g,0,0,f.o.D.c-1,f.o.D.b-1));if(0!=f.u){if(-1==f.k){o=O(N(Math.round(12*n)));for(j=1;j<=f.u;++j)0<f.e[j]&&7>f.e[j]&&(X(g,(fD(),mD)[f.e[j]]),h=g,q=L(f.K[j]-o/2),W=L(f.N[j]-o/2),M=u=o,QD(h,!0),RD(h,SD(h,q,W,u,M)));for(j=1;j<=f.v;++j)h=f.I[j],o=f.J[j],0!=f.e[h]&&f.e[h]==f.e[o]&&(X(g,(fD(),mD)[f.e[h]]),J=f.K[o]-f.K[h],R=f.N[o]-f.N[h],D=Math.sqrt(J*J+
286
- R*R),1>D&&(D=1),R/=D,D=J/D,r=3*da*R,J=3*da*D,W=y(I,m,-1,4,1),q=y(I,m,-1,4,1),W[0]=L(f.K[h]+r),q[0]=L(f.N[h]-J),W[1]=L(f.K[o]+r),q[1]=L(f.N[o]-J),W[2]=L(f.K[o]-r),q[2]=L(f.N[o]+J),W[3]=L(f.K[h]-r),q[3]=L(f.N[h]+J),o=g,h=W,QD(o,!0),RD(o,gE(o,h,q,4,!0)))}for(j=1;j<=f.v;++j){X(g,(BA(),IA));h=f.I[j];o=f.J[j];1==f.k&&0!=f.e[h]&&f.e[h]==f.e[o]&&X(g,(fD(),mD)[f.e[h]]);if(3==f.C[j]||4==f.C[j])q=h,h=o,o=q;M=f.K[h];u=f.N[h];W=f.K[o];q=f.N[o];if(1!=f.t[j]||0!=f.C[j])J=W-M,R=q-u,D=Math.sqrt(J*J+R*R),1>D&&(D=1),
287
- R/=D,D=J/D;switch(f.t[j]){case 2:10<=f.C[j]&&X(g,MA);r=n*R;J=n*D;Y(g,O(N(Math.round(M+r))),O(N(Math.round(u-J))),O(N(Math.round(W+r))),O(N(Math.round(q-J))));Y(g,O(N(Math.round(M-r))),O(N(Math.round(u+J))),O(N(Math.round(W-r))),O(N(Math.round(q+J))));X(g,IA);break;case 3:o=O(N(Math.round(M)));h=O(N(Math.round(u)));W=O(N(Math.round(W)));q=O(N(Math.round(q)));Y(g,o,h,W,q);M=O(N(Math.round(da*R)));u=O(N(Math.round(da*D)));Y(g,o+M,h-u,W+M,q-u);Y(g,o-M,h+u,W-M,q+u);break;case 9:case 0:for(h=0;10>h;++h)v=
288
- M-(M-W)/10*h,E=u-(u-q)/10*h,Y(g,O(N(Math.round(v))),O(N(Math.round(E))),O(N(Math.round(v))),O(N(Math.round(E))));ZD(g,f.o.n);o=fB(f.o.o.c).b-fB(f.o.o.c).c;J=f.f[j];h=vb;null!=J&&(h=J);J=VB(f.o.o,h);M=O(N(Math.round((M+W)/2-J/2)));r=O(N(Math.round((u+q)/2+~~(o/2)-1)));X(g,MA);$D(g,h,M,r);X(g,IA);break;default:if(1==f.C[j]||3==f.C[j])r=da*R,J=da*D,E=y(I,m,-1,3,1),v=y(I,m,-1,3,1),E[0]=O(N(Math.round(W+r))),v[0]=O(N(Math.round(q-J))),E[1]=O(N(Math.round(M))),v[1]=O(N(Math.round(u))),E[2]=O(N(Math.round(W-
289
- r))),v[2]=O(N(Math.round(q+J))),o=g,h=E,q=v,QD(o,!0),RD(o,gE(o,h,q,3,!0));else if(2==f.C[j]||4==f.C[j]){r=da*R;J=da*D;for(h=0;10>h;++h)v=M-(M-W)/10*h,E=u-(u-q)/10*h,o=h/10,Y(g,O(N(Math.round(v+r*o))),O(N(Math.round(E-J*o))),O(N(Math.round(v-r*o))),O(N(Math.round(E+J*o))))}else Y(g,O(N(Math.round(M))),O(N(Math.round(u))),O(N(Math.round(W))),O(N(Math.round(q))))}}D=y(HD,s,-1,f.u+1,1);R=y(I,m,-1,f.u+1,1);for(j=1;j<=f.v;++j)h=f.I[j],o=f.J[j],n=f.K[h],q=f.K[o],++R[h],++R[o],D[h]=D[h]/R[h]+q/R[h],D[o]=
290
- D[o]/R[o]+n/R[o];ZD(g,f.o.n);o=fB(f.o.o.c).b-fB(f.o.o.c).c;J=y(Os,s,1,f.u+1,0);W=y(I,m,-1,f.u+1,1);q=y(I,m,-1,f.u+1,1);n=y(hE,s,99,f.u+1,0);u=2;1!=f.o.C&&(u=O(N(eE(2*f.o.C))));for(j=1;j<=f.u;++j)h=iE(f,j),(null==h||1>h.length)&&(h=wa),3==f.c[j]&&0<f.A[j]&&0==f.B[j]?(J[j]=h,W[j]=q[j]=VB(f.o.o,h),n[j]=jE(f,u,j,W[j],W[j],o,!1)):(M=D[j]<f.K[j],E=!0,1<R[j]&&(0>=D[j]-f.K[j]?0-(D[j]-f.K[j]):D[j]-f.K[j])<25*f.o.C/3&&(E=!1),2<R[j]&&(E=!1),1==R[j]&&(0>=D[j]-f.K[j]?0-(D[j]-f.K[j]):D[j]-f.K[j])<25*f.o.C/10&&
291
- (M=!0),r=h,sb=l,f.o.Lb&&0<f.y[j]&&(sb+=Xb,1<f.y[j]&&(sb+=f.y[j])),v=l,0!=f.B[j]&&(1<Yj(f.B[j])&&(v+=Yj(f.B[j])),0<f.B[j]?v+=xa:v+=Ba),M||!E?h=h+sb+v+l:h=v+sb+l+h,E||(r=h),J[j]=h,r=VB(f.o.o,r),v=VB(f.o.o,h),W[j]=r,q[j]=v,v=n[j]=jE(f,u,j,r,v,o,M),M=v.d+u+1,r=v.e+o+u,X(g,f.o.u),-1==f.k&&0!=f.e[j]&&X(g,(fD(),mD)[f.e[j]]),qB(g,v.d,v.e,v.c,v.b),1==f.k?0!=f.e[j]?X(g,(fD(),mD)[f.e[j]]):X(g,(BA(),IA)):X(g,(fD(),jD)[f.c[j]]),$D(g,h,M,r));for(h=1;h<=f.z;++h)j=f.r[h][0],r=W[j],v=q[j],M=O(N(eE(f.K[j]-r/2))),r=
292
- O(N(eE(f.N[j]+~~(o/2)-1))),X(g,(BA(),MA)),$D(g,ba+f.r[h][1],M+v,r);if(0<f.E||0<f.F)if(X(g,104==f.o.d?(BA(),JA):(BA(),PA)),0<f.E&&106!=f.o.d&&(v=n[f.E],PD(g,v.d,v.e,v.c,v.b)),0<f.F&&(h=f.I[f.F],o=f.J[f.F],J=f.K[o]-f.K[h],R=f.N[o]-f.N[h],D=Math.sqrt(J*J+R*R),1>D&&(D=1),R/=D,D=J/D,r=(da+1)*R,J=(da+1)*D,E=y(I,m,-1,5,1),v=y(I,m,-1,5,1),E[0]=O(N(eE(f.K[h]+r))),E[1]=O(N(eE(f.K[o]+r))),v[0]=O(N(eE(f.N[h]-J))),v[1]=O(N(eE(f.N[o]-J))),E[3]=O(N(eE(f.K[h]-r))),E[2]=O(N(eE(f.K[o]-r))),v[3]=O(N(eE(f.N[h]+J))),
293
- v[2]=O(N(eE(f.N[o]+J))),E[4]=E[0],v[4]=v[0],106!=f.o.d&&(da=g,j=E,R=v,da.o&&(QD(da,!1),RD(da,gE(da,j,R,5,!0)))),106==f.o.d&&kE(f,f.I[f.F],f.J[f.F]))){da=0;for(j=1;j<=f.u;++j)0<f.b[j]&&++da;if(da>~~(f.u/2))for(j=1;j<=f.u;++j)0<f.b[j]?f.b[j]=0:f.b[j]=1;X(g,(BA(),JA));for(j=1;j<=f.u;++j)0<f.b[j]&&(v=n[j],PD(g,v.d,v.e,v.c,v.b))}}}a.A||(a.pb?(X(e,(BA(),GA)),Y(e,c-1,0,c-1,b-1)):(X(e,RA(hD)),Y(e,c-1,0,c-1,b-1),X(e,hD),Y(e,c-2,0,c-2,b-1),X(e,iD),Y(e,c-3,0,c-3,b-1)));a.Gb&&(d=~~((c-48)/2),X(e,(BA(),MA)),Y(e,
294
- d,~~(b/2),d+48,~~(b/2)),Y(e,d+48,~~(b/2),d+48-6,~~(b/2)+6),Y(e,d+48,~~(b/2),d+48-6,~~(b/2)-6));a.A&&(a.U=new dB(Yb,0,13),a.X=new UB(a.U),null!=a.cb&&(d=VB(a.X,a.cb),c=O(N(Math.round((c-d)/2))),b-=13,X(e,(BA(),IA)),ZD(e,a.U),$D(e,a.cb,c,b)));aE(a.Vb,a.db,a.Z,2*a.Z+a.T)}}
295
- function XD(a,b,c,d,e){var f,g,j,h,n;f=~~(a.Z/4);g=!1;h=y(I,m,-1,9,1);n=y(I,m,-1,9,1);c+=~~(a.Z/2);d+=~~(a.Z/2);a=~~(a.Z/2)-~~(f/2);1==e&&(e=6,g=!0);for(f=0;f<=e;++f)j=6.283185307179586/e*(f-0.5),h[f]=L(c+a*Math.sin(j)),n[f]=L(d+a*Math.cos(j));f=e+1;b.o&&(QD(b,!1),RD(b,gE(b,h,n,f,2<f)));if(g){for(f=0;f<=e;++f)j=6.283185307179586/e*(f-0.5),h[f]=L(c+(a-3)*Math.sin(j)),n[f]=L(d+(a-3)*Math.cos(j));Y(b,h[0],n[0],h[1],n[1]);Y(b,h[2],n[2],h[3],n[3]);Y(b,h[4],n[4],h[5],n[5])}}
296
- function lE(a){var b,c,d;if(a.ob){d=a.Rb.b;b=a.D.c;c=2*a.Z+a.T;X(d,hD);qB(d,0,0,b,c);a.pb?(X(d,(BA(),GA)),c=14*(a.Z+a.T),PD(d,c,0,b-c-1,2*a.Z+a.T-1)):(X(d,RA(hD)),Y(d,b-1,0,b-1,c-1),Y(d,0,c-1,b-1-2,c-1),X(d,iD),Y(d,0,0,b-1,0));c=a.d;233<=a.d&&262>=a.d&&(a.d=213);for(b=1;14>=b;++b)OD(a,d,b,1),OD(a,d,b,2);a.d=c;aE(a.Vb,a.Rb,0,0)}}
297
- function UD(a,b,c,d,e){var f,g,j,h,n,o,q,r;n=~~(d/4);o=2+~~(n/2);g=2+n;r=c+~~(10*d/24);h=r+n;q=b+d;e?(j=2+b,f=o+b,g+=b):(f=q-o,j=q-2,g=q-g);Y(a,j,r,f,h);Y(a,g,r,f,h);j=~~(n/3);Y(a,f,r+j,f,h);f=d-o-4;h=270;e?(b+=o,e=270):(b=q-f-o,h*=-1,e=-90);TD(a,b,c+o-j,f,d-4-j-1,e,h)}
298
- function mE(a,b,c){var d,e,f,g,j,h;nE(a,c);if(0==b.indexOf("$RXN")){a.Gb=!0;a.kb=!0;j=oE(b);b=new $C(b,j,!0);e=l;for(d=1;5>=d;++d)e=pE(b,j);d=qE(FC(io(e.substr(0,3)),10)).b;g=qE(FC(io(e.substr(3,3)),10)).b;pE(b,j);for(e=1;e<=d+g;++e){for(f=l;!(h=pE(b,j),null==h||G(h,"$MOL"));)f+=h+j;a.gb[++a.vb]=new rE(a,f)}GD(a,1,d,1);GD(a,d+1,d+g,3)}else{a.Gb=!1;a.$=new rE(a,b);if(!a.$||0==a.$.u)return a.lb=!0,a.K="ERROR - problems in reading/processing MOL input",DD(a),!1;null!=a.j&&a.$&&sE(a.$,a.j,!0);null!=a.k&&
299
- a.$&&sE(a.$,a.k,!1);j=tE(a.$,!1);if(1==j)a.gb[++a.vb]=a.$;else{a.kb=!0;for(e=1;e<=j;++e)a.gb[++a.vb]=new uE(a,a.$,e)}a.f=1;a.$=a.gb[a.f];GD(a,1,j,0)}c&&DD(a);return!0}function er(a,b){a.lb=!0;a.K=b}function fE(a,b){100>b&&(!oD[b]&&(oD[b]=new dB(Yb,0,b)),!qD[b]&&Js(qD,b,new UB(oD[b])),a.n=oD[b],a.o=qD[b])}
300
- function ir(a,b){var c,d;if(0==b)return!1;CD(a);c=a.d;a.d=b;if(300>=b)switch(a.ob=!0,a.mb=!0,b){case 102:LD(a);break;case 110:a.nb=!0;a.d=c;a._.b!=a._.c&&a._.b.c!=a._.c?a.i&&(++a.vb,a.f=a.vb,a.i=!1):(a.lb=!0,a.K="No more undo");if(!(a._.b!=a._.c&&a._.b.c!=a._.c))break;vE(a,wE(a._));a.nb=!0;break;case 111:a.d=c;if(a._.b.d)a.i&&(++a.vb,a.f=a.vb,a.i=!1);else{a.lb=!0;a.K="No more redo";break}if(!a._.b.d)break;d=a._;if(!d.b.d)throw new uv("Cannot redo. Index is out of range.");if(!d.b.d)throw new uv(ac);
301
- d.b=d.b.d;vE(a,d.b.b);a.nb=!0;break;case 152:a.d=c;d=a.Ib;d.b<d.d-1?(++d.b,d=nu(d,d.b)):d=null;null==d?(a.lb=!0,a.K=kc):(er(a,gc+(a.Ib.b+1)+ca+a.Ib.d),d=xE(d),yE(a,d,!1,!0),null!=a.tb&&bD(a.tb,null));break;case 151:a.d=c;d=a.Ib;0<d.b?(--d.b,d=nu(d,d.b)):d=null;null==d?(a.lb=!0,a.K=kc):(er(a,gc+(a.Ib.b+1)+ca+a.Ib.d),d=xE(d),yE(a,d,!1,!0),null!=a.tb&&bD(a.tb,null));break;case 101:a.Mb&&zE(a.Mb);a.Mb=new AE(1,a);a.d=c;break;case 107:!a.Eb?a.Eb=new BE(a):a.Eb.hc.d.hb?CE(a.Eb.hc.d):DE(a.Eb);break;case 114:a.c&&
302
- zE(a.c);a.c=new AE(0,a);a.d=c;break;case 103:a.nb=!0;a.qb=!0;a.d=c;break;case 105:a.nb=!0;a.r&&a.hb&&(a.hb=!1,EE(a.$),a.d=c);a.z=1;break;case 109:a.d=c;d=FE(a.$);if(2==d){a.lb=!0;a.K="Copying the agent not possible !";break}d=y(HD,s,-1,4,1);ID(a.$,d);a.nb=!0;a.$=new uD(a.$);d=L(~~((a.D.c-a.Z)/2)-d[0]);for(c=1;c<=a.$.u;++c)a.$.K[c]+=2*d;GE(a.$);a.gb[++a.vb]=a.$;a.f=a.vb;break;case 104:0<a.$.E?(a.nb=!0,HE(a.$,a.$.E),a.$.E=0,ED(a)):0<a.$.F&&(a.nb=!0,IE(a.$,a.$.F),a.$.F=0,ED(a));JE(a.$);break;case 213:a.d=
303
- c;if(!a.F){var e,f,g,j;j=new KB;for(d=a.H,e=0,f=d.length;e<f;++e)c=d[e],g=new CB(c),IB(j,g),g.d=c,Vz(g.e,a);Uy(a,j);a.F=j}JB(a.F,a,a.G.b,a.G.c)}else{a.mb=!0;a.ob=!0;switch(b){case 301:a.e=3;break;case 401:a.e=4;break;case 501:a.e=5;break;case 701:a.e=9;break;case 801:a.e=10;break;case 901:a.e=11;break;case 1001:a.e=12;break;case 601:a.e=8;break;case 1101:a.e=7;break;case 1300:a.e=1;break;case 1201:a.p&&(zE(a.p),a.p=null);0==a.$.E&&(a.p=new AE(2,a));a.e=18;break;case 1301:a.e=19;break;case 1302:a.e=
304
- 20;break;case 1303:a.e=21;break;case 1304:a.e=22}0<a.$.E&&(a.nb=!0,a.e!=a.$.c[a.$.E]&&18!=a.e&&(a.$.c[a.$.E]=a.e,a.$.B[a.$.E]=0,a.$.y[a.$.E]=0,ED(a)),18==a.e&&(d=vo((fr(),gr).hc.b.pb,bh),KE(a.$,a.$.E,d),ED(a)),JE(a.$))}DD(a);return!0}
305
- function ar(a){var b,c,d;d=yD(a);c=l;if(a.Gb){var e,f,g;g=Ds([4,a.vb+1]);for(f=1;3>=f;++f){e=0;for(b=1;b<=a.vb;++b)FE(a.gb[b])==f&&(g[f][++e]=b);g[f][0]=e}c=c+"$RXN\n\n\nJME Molecular Editor\n"+(LE(g[1][0],3)+LE(g[3][0],3)+aa);for(b=1;b<=g[1][0];++b)c+=na+ME(a.gb[g[1][b]],d);for(b=1;b<=g[3][0];++b)c+=na+ME(a.gb[g[3][b]],d)}else 1<a.vb&&(a.$=new NE(a,a.gb,a.vb)),c=ME(a.$,d),1<a.vb&&(a.$=a.gb[a.f]);return c}
306
- function OE(a,b,c,d){var e;e=c;var f=d,g,j;(g=PE(b),j=0!=(b.f&2),g||j)?(a.Gb?JB((!a.x&&(a.x=ND(a,!0)),a.x),a,e,f):JB((!a.w&&(a.w=ND(a,!1)),a.w),a,e,f),e=!0):e=!1;if(e)return!0;if(a.A)return!1;e=!0;a.lb=!1;a.Tb=c-a.Z;a.Ub=d-(2*a.Z+a.T);a.lb=!0;a.K=l;a.hb=QE(b);a.ib=!1;if(c<a.Z||d<2*a.Z+a.T){b=0;for(e=1;14>=e;++e)if(c<e*(a.Z+a.T)){b=e;break}c=0;for(e=1;e<=cE+2;++e)if(d<e*(a.Z+a.T)){c=e;break}if(0==b||0==c)return!1;d=100*c+b;if(112==d)return a.Nb=!0,a.lb=!0,a.K="Next ring will be added as spiro",DD(a),
307
- !0;if(113==d)if(a.Jb)a.lb=!0,a.K="Move one atom",DD(a);else return!0;if(!a.Sb&&1201==d||!a.Db&&107==d||!a.Pb&&201==d||!a.kb&&103==d||!a.ub&&!a.r&&105==d||!a.Gb&&109==d||214==d)return!1;e=ir(a,d)}else{if(d>a.D.b-a.Z-1)return!1;a.ib=!0;c-=a.Z;d-=2*a.Z+a.T;if(0<a.$.E)if(104==a.d)HE(a.$,a.$.E),a.$.E=0,ED(a);else{if(106==a.d)return!0;if(108==a.d)RE(a.$,a.$.E,0),ED(a);else if(157==a.d)RE(a.$,a.$.E,1),ED(a);else if(158==a.d)RE(a.$,a.$.E,-1),ED(a);else if(202==a.d||203==a.d||204==a.d||201==a.d||205==a.d)a.P=
308
- 1,Z(a.$,0),a.$.G=a.$.E,205==a.d?(a.$.w=1,a.$.j[1]=a.$.u,a.$.j[0]=a.$.E,a.$.F=0):ED(a);else if(206<=a.d&&229>=a.d)a.P=2,SE(a.$),ED(a);else if(230==a.d)a.P=3,ED(a);else if(233<=a.d&&262>a.d)TE(a.$,!1),ED(a),a.P=3;else if(107==a.d){if(a.Eb.c)return!0;KE(a.$,a.$.E,vo(a.Eb.f.hc.b.pb,bh));a.$.n=!0;ED(a)}else if(105==a.d)UE(a.$),ED(a);else if(113!=a.d)if(300<a.d){if(a.e!=a.$.c[a.$.E]||18==a.e)a.$.c[a.$.E]=a.e,a.$.B[a.$.E]=0,a.$.y[a.$.E]=0,18==a.e&&(d=vo((fr(),gr).hc.b.pb,bh),1>d.length&&(d=Mc),KE(a.$,a.$.E,
309
- d)),ED(a)}else e=!1}else if(0<a.$.E&&206<=a.d&&229>=a.d)a.P=2,SE(a.$),ED(a);else if(0<a.$.F)if(104==a.d)IE(a.$,a.$.F),a.$.F=0,ED(a);else if(106==a.d){d=a.$;c=a.$.F;if(0<d.b[d.I[c]]&&0<d.b[d.J[c]])er(d.o,"Removal of substituent not possible.");else for(;;){c=0;for(b=d.u;1<=b;--b)0<d.b[b]&&b>c&&(c=b);if(0==c)break;HE(d,c);d.b[c]=0}a.$.F=0;ED(a)}else if(201==a.d)VE(a.$,a.$.F),ED(a);else if(202==a.d||205==a.d)1==a.$.t[a.$.F]&&0==a.$.C[a.$.F]?a.$.t[a.$.F]=2:(a.$.t[a.$.F]=1,a.$.C[a.$.F]=0),ED(a),a.$.C[a.$.F]=
310
- 0;else if(203==a.d)a.$.t[a.$.F]=2,a.$.C[a.$.F]=0,ED(a);else if(204==a.d)a.$.t[a.$.F]=3,a.$.C[a.$.F]=0,ED(a);else if(206<=a.d&&229>=a.d)a.P=2,SE(a.$),ED(a);else if(107==a.d){if(!a.Eb.c)return!0;d=vo(a.Eb.f.hc.b.pb,bh);a.$.t[a.$.F]=9;a.$.f[a.$.F]=d;ED(a)}else 105==a.d?(a.lb=!0,a.K="Only atoms may be marked !"):e=!1;else if(0==a.vb||a.qb){if(201>=a.d)return!1;++a.vb;a.f=a.vb;a.gb[a.vb]=new MD(a);a.$=a.gb[a.vb];a.qb=!1;202<=a.d&&204>=a.d||205==a.d?(WE(a.$),a.$.v=0,a.$.A[1]=0,a.$.K[1]=c,a.$.N[1]=d,a.$.E=
311
- 1,a.$.G=1,a.P=1,Z(a.$,0),205==a.d&&(a.$.K[2]=c+21.65,a.$.N[2]=d-12.5,a.$.j[0]=1,a.$.j[1]=2,a.$.w=1)):206<=a.d&&229>=a.d?(a.$.M=c,a.$.P=d,a.P=2,SE(a.$)):300<a.d?(WE(a.$),a.$.c[1]=a.e,a.$.v=0,a.$.A[1]=0,a.$.K[1]=c,a.$.N[1]=d,a.$.E=1,18==a.e&&(d=vo((fr(),gr).hc.b.pb,bh),1>d.length&&(d=Mc),KE(a.$,1,d))):230==a.d?XE(a,null,!0):233<=a.d&&262>a.d?(WE(a.$),a.$.v=0,a.$.A[1]=0,a.$.K[1]=c,a.$.N[1]=d,a.$.E=1,TE(a.$,!0)):rC();ED(a)}else e=!1;e&&(JE(a.$),a.mb=!1,a.ob=!1,a.nb=!0,DD(a))}return e}
312
- function YE(a,b,c,d){var e,f;if(a.A||!a.ib||PE(b))return!0;a.lb=!1;c-=a.Z;d-=2*a.Z;e=c-a.Tb;f=d-a.Ub;if(2==a.P||3==a.P||9==a.P)return!0;if(1==a.P){a:{b=a.$;e=c;f=d;var g,j,h,n,o,q,r;b.E=0;b.K[0]=e;b.N[0]=f;g=ZE(b,0);if(0<g&&205!=b.o.d)b.E=g,g!=b.G?(b.K[b.u]=b.K[g],b.N[b.u]=b.N[g]):(b.K[b.u]=b.M,b.N[b.u]=b.P);else if(205==b.o.d){b.F=0;g=b.j[b.w];n=b.j[b.w-1];j=b.K[g]-b.K[n];h=b.N[g]-b.N[n];g=Math.sqrt(j*j+h*h);1>g&&(g=1);h/=g;j/=g;o=g/2/Math.tan(0.5235987755982988);q=e-b.K[n];r=f-b.N[n];n=-g/2+q*j+
313
- r*h;h=r*j-q*h;if(0>n)if(1<b.w)HE(b,b.u),--b.w,b.D=!1;else if(2==b.u)0>b.N[2]-b.N[1]&&0<f-b.N[1]?b.N[2]=b.N[1]+g/2:0<b.N[2]-b.N[1]&&0>f-b.N[1]&&(b.N[2]=b.N[1]-g/2),0>b.K[2]-b.K[1]&&0<e-b.K[1]?b.K[2]=b.K[1]+0.866*g:0<b.K[2]-b.K[1]&&0>e-b.K[1]&&(b.K[2]=b.K[1]-0.866*g);else{if(2==b.A[b.j[0]]&&(o=b.H[b.j[0]][1],o==b.j[1]&&(o=b.H[b.j[0]][2]),j=b.K[b.j[0]]-b.K[o],h=b.N[b.j[0]]-b.N[o],g=Math.sqrt(j*j+h*h),1>g&&(g=1),h/=g,j/=g,q=e-b.K[o],r=f-b.N[o],e=r*j-q*h,q=b.K[b.j[1]]-b.K[o],r=b.N[b.j[1]]-b.N[o],f=r*j-
314
- q*h,0<e&&0>f||0>e&&0<f))e=b.v,b.E=b.j[0],Z(b,0),IE(b,e),0<ZE(b,b.u)&&(b.D=!0)}else{if(b.D)break a;e=-1;n<1.5*g&&(e=(1.5*g-n)*o/(1.5*g));if((0>=h?0-h:h)>e){++b.w;if(100<b.w){er(b.o,"You are too focused on chains, enough of it for now !");--b.w;break a}b.E=b.u;Z(b,O(N(Math.round(h))));b.j[b.w]=b.u;0<ZE(b,b.u)&&(b.D=!0)}}b.E=0;e=b.w;er(b.o,e+l)}else j=e-b.K[b.G],h=f-b.N[b.G],g=Math.sqrt(j*j+h*h),1>g&&(g=1),b.K[b.u]=b.K[b.G]+25*(j/g),b.N[b.u]=b.N[b.G]+25*(h/g)}a.s=!0}else if(113==a.d&&0<a.$.E)a.jb||(a.jb=
315
- !0),b=a.$,0<b.E&&(e=b.E,b.K[e]=c,b.N[e]=d);else if(QE(b)||PE(b))BD(a.$,e),a.P=5;else if(0==a.$.E&&0==a.$.F){5!=a.P&&(e=f=0);b=a.$;for(g=1;g<=b.u;++g)b.K[g]+=e,b.N[g]+=f;h=y(HD,s,-1,4,1);ID(b,h);g=h[0];h=h[1];if(!(0<g&&g<b.o.D.c-b.o.Z&&0<h&&h<b.o.D.b-3*b.o.Z))for(g=1;g<=b.u;++g)b.K[g]-=e,b.N[g]-=f;a.P=5}a.E=!1;CD(a);a.nb=!0;DD(a);a.Tb=c;a.Ub=d;return!0}
316
- function $E(a,b,c,d){var e,f,g;if(!(a.A&&null==a.sb||PE(b))){c-=a.Z;d-=2*a.Z;g=!1;f=0;b=1;a:for(;b<=a.vb;++b){e=a.gb[b];for(var j=c,h=d,n=void 0,o=void 0,q=void 0,r=void 0,u=void 0,n=void 0,q=0,u=((fD(),nD)?350:170)+1,r=1;r<=e.v;++r)n=j-e.L[r],o=h-e.O[r],n=n*n+o*o,n<u&&(u=n,q=r);q*=-1;for(r=1;r<=e.u;++r)n=j-e.K[r],o=h-e.N[r],n=n*n+o*o,n<u&&(u=n,q=r);e=q;if(0!=e){a.gb[b].E=0<e?e:0;a.gb[b].F=0>e?-e:0;f=b;g=!0;aF(a,a.gb[b].E);113==a.d&&0>e&&(g=!1,a.gb[b].F=0);break a}else if(aF(a,0),0<a.gb[b].E||0<a.gb[b].F)a.gb[b].E=
317
- 0,a.gb[b].F=0,g=!0}if(g){for(b=a.f+1;b<=a.vb;++b)a.gb[b].E=0,a.gb[b].F=0;a.E=!1;CD(a);a.nb=!0;DD(a)}!a.A&&0!=f&&f!=a.f&&(a.f=f,a.$=a.gb[a.f])}}
318
- function bF(a){if(a.A)return!0;a.jb&&(a.jb=!1,ED(a));a.lb=!1;a.Q=lh;if(1==a.P){if(205==a.d){var b=a.$,c,d;b.D&&(c=ZE(b,b.u),6>b.A[c]&&(cF(b),d=b.j[b.w-1],b.I[b.v]=c,b.J[b.v]=d,b.H[c][++b.A[c]]=d,b.H[d][++b.A[d]]=c),HE(b,b.u));b.D=!1;ED(a)}else a:{var b=a.$,e,f;c=ZE(b,b.u);if(0!=c){--b.u;for(f=1;f<b.v;++f)if(d=b.I[f],e=b.J[f],d==c&&e==b.G||d==b.G&&e==c){--b.v;--b.A[b.G];3>b.t[f]?(++b.t[f],b.C[f]=0):er(b.o,"Maximum allowed bond order is 3 !");break a}6==b.A[c]?(--b.v,--b.A[b.G],er(b.o,"Not possible connection !")):
319
- (b.J[b.v]=c,b.H[c][++b.A[c]]=b.G,b.H[b.G][b.A[b.G]]=c,b.L[b.v]=O(N(eE((b.K[b.G]+b.K[c])/2))),b.O[b.v]=O(N(eE((b.N[b.G]+b.N[c])/2))))}}KD(a.$);a.s&&(b=a._,b.b!=b.c&&b.b.c!=b.c&&(c=b.b.d,wE(b),b.b.d=c),ED(a),a.s=!1)}else 5==a.P&&(KD(a.$),ED(a));0<a.P&&(a.E=!1,CD(a),a.nb=!0,JE(a.$),dF(a.$),DD(a),a.P=0,a.i=!1);if(nD&&(0!=a.$.F||0!=a.$.E))a.$.F=0,a.$.E=0,CD(a),a.nb=!0,DD(a);return!0}function CD(a){a.mb=!1;a.ob=!1;a.nb=!1}
320
- function aF(a,b){if(null!=a.sb&&!(0>=b&&0==a.Cb||b==a.Cb&&a.f==a.Bb))0>=b&&0<a.Cb&&(b=0),a.Cb=b,a.Bb=a.f,bD(a.sb,H(eF,s,126,[new T(a.f),new T(b)]))}
321
- function fF(a,b,c){var d,b=b.toLowerCase();-1<b.indexOf("norbutton")?a.Fb=!1:-1<b.indexOf("rbutton")&&(a.Fb=!0);-1<b.indexOf("nohydrogens")?a.Lb=!1:-1<b.indexOf("hydrogens")&&(a.Lb=!0);-1<b.indexOf("keephs")&&(a.O=!0);-1<b.indexOf("removehs")&&(a.O=!1);-1<b.indexOf("noquery")?a.Db=!1:-1<b.indexOf("query")&&(a.Db=!0);-1<b.indexOf(If)?a.Gb=!1:-1<b.indexOf(gg)&&(a.Gb=!0);-1<b.indexOf("noautoez")?a.q=!1:-1<b.indexOf("autoez")&&(a.q=!0);-1<b.indexOf("nostereo")?a.Pb=!1:-1<b.indexOf("stereo")&&(a.Pb=!0);
322
- -1<b.indexOf("nocanonize")?a.t=!1:-1<b.indexOf("canonize")&&(a.t=!0);-1<b.indexOf("nomultipart")?a.kb=!1:-1<b.indexOf(Df)&&(a.kb=!0);-1<b.indexOf("nonumber")?(a.ub=!1,a.r=!1):-1<b.indexOf(Mf)&&(a.ub=!0,a.r=!1);-1<b.indexOf("newlook")?(a.pb=!0,a.T=1):-1<b.indexOf("oldlook")&&(a.pb=!1,a.T=0);-1<b.indexOf("autonumber")&&(a.r=!0,a.ub=!0);-1<b.indexOf("star")&&(a.Ob=!0,a.ub=!0);-1<b.indexOf("nostar")&&(a.Ob=!1,a.ub=!1);-1<b.indexOf("polarnitro")&&(a.zb=!0);-1<b.indexOf("nopolarnitro")&&(a.zb=!1);-1<b.indexOf("depict")&&
323
- (a.A=!0,a.Z=0,a.db=null,GD(a,1,a.vb,0));if(-1<b.indexOf("nodepict")){a.A=!1;for(d=1;d<=a.vb;++d)gF(a.gb[d]),JD(a.gb[d]);a.C=1;a.Z=24;a.$&&(a.$.x=!0)}-1<b.indexOf("xbutton")&&(a.Sb=!0);-1<b.indexOf("noxbutton")&&(a.Sb=!1);d=a.wb;-1<b.indexOf("nopaste")?a.wb=!1:-1<b.indexOf(Wf)&&(a.wb=!0);d!=a.wb&&(a.w=null,a.x=null);-1<b.indexOf(od)&&(a.B=!0);-1<b.indexOf("noborder")&&(a.B=!1);b.indexOf("writesmi");b.indexOf("writemi");b.indexOf("writemol");-1<b.indexOf("nocenter")&&(a.rb=!0);-1<b.indexOf("jmeh")&&
324
- (a.N=!0);-1<b.indexOf("showan")&&(a.Kb=!0);-1<b.indexOf("atommovebutton")&&(a.Jb=!0);-1<b.indexOf("noatommovebutton")&&(a.Jb=!1);a.Gb&&(a.r=!0,a.kb=!0);a.A||(a.B=!1);a.Fb&&++cE;c&&DD(a)}
325
- function DD(a){var b,c,d,e;b=Qz(a);!a.D||b.c!=a.D.c||b.b!=a.D.b||!a.db||!a.J?(e=!1,a.D&&(e=b.c!=a.D.c||b.b!=a.D.b),a.D=b,d=b.c-a.Z,c=b.b-3*a.Z-a.T,1>d&&(d=1),1>c&&(c=1),a.db=a.Oe(a.db,d,c),a.A&&e&&GD(a,1,a.vb,0),dE(a),a.A||(a.Rb=a.Oe(a.Rb,b.c,2*a.Z+a.T),lE(a),c=b.b-2*a.Z+a.T,1>c&&(c=1),a.R=a.Oe(a.R,a.Z,c),bE(a),a.J=a.Oe(a.J,d,a.Z),YD(a))):(dE(a),a.A||(YD(a),a.E&&(lE(a),bE(a)),a.E=!0));a.mb=!0;a.ob=!0;a.nb=!0;a.lb=!0}
326
- function hF(a,b){var c,d,e;e=l;for(d=1;d<=a.vb;++d){if(0<b&&(c=FE(a.gb[d]),c!=b))continue;c=a.gb[d];for(var f=void 0,g=void 0,j=void 0,h=void 0,n=g=f=void 0,o=void 0,j=void 0,o=l+c.u+ba+c.v,h=1;h<=c.u;++h){j=iE(c,h);c.o.N&&0<c.y[h]&&(j+=Xb,1<c.y[h]&&(j+=c.y[h]));0!=c.B[h]&&(0<c.B[h]?j+=xa:j+=Ba,1<Yj(c.B[h])&&(j+=Yj(c.B[h])));g=-1;for(f=1;f<=c.z;++f)if(c.r[f][0]==h){g=c.r[f][1];break}c.o.Ob&&0<c.e[h]&&(g=1);-1<g&&(j+=mb+g);o+=ba+j+ba+iF(0.055999999999999994*c.K[h],0,2)+ba+iF(0.055999999999999994*-c.N[h],
327
- 0,2)}for(h=1;h<=c.v;++h)f=c.I[h],g=c.J[h],n=c.t[h],1==c.C[h]?n=-1:2==c.C[h]?n=-2:3==c.C[h]?(n=-1,j=f,f=g,g=j):4==c.C[h]?(n=-2,j=f,f=g,g=j):10==c.C[h]&&(n=-5),9==c.t[h]&&(n=c.C[h]),o+=ba+f+ba+g+ba+n;c=o;0<c.length&&(0<e.length&&(e+=jh),e+=c)}return e}function tD(a,b){var c,d,e;e=l;for(c=1;c<=a.vb;++c){if(0<b&&(d=FE(a.gb[c]),d!=b))continue;d=void 0;d=jF(a.gb[c]);d=kF(d);0<d.length&&(0<e.length&&(e+=Wa),e+=d)}return e}
328
- function ED(a){var b;switch(a.P){case 5:case 7:case 9:break;default:null!=a.tb&&bD(a.tb,null)}var c,d,e;e=new lF;e.b=a.f;e.i=a.vb;c=!1;for(b=1;99>b;++b)if(d=a.gb[b])0<d.u&&(c=!0),e.e[b]=jF(d);else break;e.j=a.Gb;e.f=a.kb;e.c=a.C;e.d=a.P;if(b=c?e:null)a=a._,b=new mF(b),c=a.b.d,a.b.d=b,b.c=a.b,c&&(b.d=c,c.c=b),a.b=b}function yE(a,b,c,d){try{mE(a,b,d)?c&&ED(a):DD(a)}catch(e){if(e=Si(e),A(e,123))DD(a);else throw e;}}
329
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330
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- function nA(a,b){var c,d;(0>b||b>a.c)&&NG(b,a.c);if(b>=~~a.c>>1){d=a.b;for(c=a.c;c>b;--c)d=d.c}else{d=a.b.b;for(c=0;c<b;++c)d=d.b}return new aH(a,b,d)}function rA(){this.b=new bH;this.c=0}t(521,513,Ph,rA);_.Ef=function(a){new iA(a,this.b);++this.c;return!0};_.Nf=function(a){return nA(this,a)};_.Ke=function(){return this.c};_.b=null;_.c=0;function oA(a){if(a.c==a.e.b)throw new Nv;a.d=a.c;a.c=a.c.b;++a.b;return a.d.d}
394
- function SG(a){if(!a.d)throw new gx;a.c==a.d?a.c=a.d.b:--a.b;var b=a.d;b.b.c=b.c;b.c.b=b.b;b.b=b.c=b;a.d=null;--a.e.c}function aH(a,b,c){this.e=a;this.c=c;this.b=b}t(522,1,{},aH);_.dd=function(){return this.c!=this.e.b};_.Pf=function(){return this.c.c!=this.e.b};_.ed=function(){return oA(this)};_.Qf=function(){if(this.c.c==this.e.b)throw new Nv;this.d=this.c=this.c.c;--this.b;return this.d.d};_.fd=function(){SG(this)};_.b=0;_.c=null;_.d=null;_.e=null;function bH(){this.b=this.c=this}
395
- function iA(a,b){this.d=a;this.b=b;this.c=b.c;b.c.b=this;b.c=this}t(523,1,{},bH,iA);_.b=null;_.c=null;_.d=null;function JC(a,b){this.b=a;this.c=b}t(524,506,ui,JC);_.Hf=function(){return this.b};_.If=function(){return this.c};_.Jf=function(a){var b;b=this.c;this.c=a;return b};_.b=null;_.c=null;function Nv(){An()}t(525,100,{116:1,123:1,129:1,131:1,136:1},Nv);function LC(a,b){return Ls(a)===Ls(b)||null!=a&&In(a,b)}function aB(a){var b=y(sA,s,89,0,0);return Fk(a.b,b)}function Iz(){this.b=new gj}
396
- t(527,508,Wh,Iz);_.Kf=function(a,b){yz(this.b,a,b)};_.Ef=function(a){return aj(this.b,a)};_.Ff=function(a){return-1!=Rj(this.b,a)};_.Lf=function(a){return nu(this.b,a)};_.He=function(){return 0==this.b.d};_.Fd=function(){return new Mi(this.b)};_.Of=function(a){return qu(this.b,a)};_.Ke=function(){return this.b.d};_.tS=function(){return JG(this.b)};_.b=null;function zE(a){a.hc.d.hb&&gB(a)}function cH(a){var b;if(a.hc.d.hb){b=$y(a);var c=a.k,d=b.c;c.b=b.b;c.c=d}iB(a)}
397
- function dH(a,b,c){a.b+=b;a.c+=c;a.b=0>a.b?0:a.b;a.c=0>a.c?0:a.c}function DE(a){var b=a.k;eH(a.hc.d,b.b,b.c);!Zy(a)&&Dz(a);nz(a)}function fH(){lB.call(this,l);this.j=new vA(this.Rf());Vz(this.r,new gH(this))}t(529,406,zi);_.Ud=function(a,b){return Ls(a.i)===Ls(this.j)?(cH(this),!0):this.Sf(a,b)};_.Rf=function(){return"Close"};_.Sf=function(){return!1};_.Md=function(){cH(this)};_.j=null;_.k=null;
398
- function LF(a,b,c){fH.call(this);this.hc&&nB(this.hc.d,!1);kB(this,!1);Gz(this,new vB(0));a=new zB(a,1);Q(this,a,null);a=new Kz;Q(a,this.j,null);Q(this,a,null);b&&(this.k=$y(b),jB(this),dH(this.k,~~(uo(b.Vb.pb,Pf)/2)-~~(this.mc/2),~~(uo(b.Vb.pb,Of)/2)-~~(this.cc/2)));c&&P(this,c)}t(528,529,zi,LF);_.Rf=function(){return"OK"};function wE(a){if(!(a.b!=a.c&&a.b.c!=a.c))throw new uv("Cannot undo. Index is out of range.");if(!a.b.c)throw new uv(ac);a.b=a.b.c;return a.b.b}
399
- function GF(){this.b=this.c=new hH}t(530,1,{},GF);_.b=null;function hH(){this.b=null}function mF(a){this.b=a}t(531,1,{},hH,mF);_.b=null;_.c=null;_.d=null;function gH(a){this.b=a}t(532,441,fi,gH);_.b=null;function br(a){this.b=a}t(533,1,{},br);_.b=null;function wD(){wD=x;xD=new iH("COPY_SMILES",0);zD=new iH("COPY_MOL",1);AD=new iH("PASTE",2);jH=H(kH,s,138,[xD,zD,AD])}function iH(a,b){Bo.call(this,a,b)}t(534,146,{116:1,120:1,122:1,138:1},iH);var jH,zD,xD,AD;function lF(){this.e=y(uF,s,139,99,0)}
400
- t(535,1,{},lF);_.b=0;_.c=1;_.d=0;_.f=!1;_.i=0;_.j=!1;function lH(a){a.c=y(I,m,-1,20,1);a.B=y(I,m,-1,20,1);a.K=y(HD,s,-1,20,1);a.N=y(HD,s,-1,20,1);a.H=Ds([20,7]);a.e=y(I,m,-1,20,1);a.d=y(Os,s,1,20,0);a.p=y(Os,s,1,20,0);a.y=y(I,m,-1,20,1);a.A=y(I,m,-1,20,1);a.I=y(I,m,-1,20,1);a.J=y(I,m,-1,20,1);a.t=y(I,m,-1,20,1);a.C=y(I,m,-1,20,1);a.L=y(I,m,-1,20,1);a.O=y(I,m,-1,20,1);a.f=y(Os,s,1,20,0);a.r=Ds([10,2]);a.j=y(I,m,-1,101,1)}
401
- function mH(a,b,c,d){var e,f,g,j,h,n,o,q,r;h=y(I,m,-1,4,1);f=a.K[c]-a.K[b];g=a.N[c]-a.N[b];o=Math.sqrt(f*f+g*g);0.001>o&&(o=0.001);r=g/o;e=f/o;n=y(I,m,-1,4,1);for(j=0;4>j;++j)d[j]==c||0>=d[j]||(0==n[1]?n[1]=d[j]:0==n[2]?n[2]=d[j]:0==n[3]&&(n[3]=d[j]));q=y(HD,s,-1,4,1);d=y(HD,s,-1,4,1);for(j=1;3>=j;++j)3==j&&0==n[3]||(f=(a.K[n[j]]-a.K[b])*e+(a.N[n[j]]-a.N[b])*r,g=(a.N[n[j]]-a.N[b])*e-(a.K[n[j]]-a.K[b])*r,o=Math.sqrt(f*f+g*g),0.001>o&&(o=0.001),q[j]=g/o,d[j]=f/o);a=nH(q[1],d[1],q[2],d[2]);0<n[3]?(b=
402
- nH(q[2],d[2],q[3],d[3]),d=nH(q[1],d[1],q[3],d[3]),0<a&&0<b?(h[1]=n[1],h[2]=n[2],h[3]=n[3]):0<d&&0>b?(h[1]=n[1],h[2]=n[3],h[3]=n[2]):0>a&&0<d?(h[1]=n[2],h[2]=n[1],h[3]=n[3]):0<b&&0>d?(h[1]=n[2],h[2]=n[3],h[3]=n[1]):0>d&&0<a?(h[1]=n[3],h[2]=n[1],h[3]=n[2]):0>b&&0>a&&(h[1]=n[3],h[2]=n[2],h[3]=n[1])):0<a?(h[1]=n[1],h[2]=n[2]):(h[1]=n[2],h[2]=n[1]);h[0]=c;return h}
403
- function Z(a,b){var c,d,e,f,g,j,h,n;WE(a);switch(a.A[a.E]){case 0:a.K[a.u]=a.K[a.E]+21.65*a.o.C;a.N[a.u]=a.N[a.E]+12.5*a.o.C;break;case 1:c=a.H[a.E][1];d=0;2==a.A[c]&&(a.H[c][1]==a.E?d=a.H[c][2]:d=a.H[c][1]);e=a.K[a.E]-a.K[c];f=a.N[a.E]-a.N[c];j=Math.sqrt(e*e+f*f);0.001>j&&(j=0.001);f/=j;e/=j;h=j+25*a.o.C*Math.cos(1.0471975511965976);n=25*a.o.C*Math.sin(1.0471975511965976);g=oH(a,a.E,c);if(3==a.t[g]||204==a.o.d||1!=a.t[g]&&(203==a.o.d||204==a.o.d)||a.q)h=j+25*a.o.C,n=0;0<d&&0<(a.N[d]-a.N[c])*e-(a.K[d]-
404
- a.K[c])*f&&(n=-n);0<b&&0>n?n=-n:0>b&&0<n&&(n=-n);a.K[a.u]=a.K[c]+h*e-n*f;a.N[a.u]=a.N[c]+n*e+h*f;break;case 2:c=y(HD,s,-1,2,1);pH(a,a.E,25*a.o.C,c);a.K[a.u]=c[0];a.N[a.u]=c[1];break;case 3:case 4:case 5:for(g=1;g<=a.A[a.E]&&!(c=a.H[a.E][g],e=a.K[a.E]-a.K[c],f=a.N[a.E]-a.N[c],j=Math.sqrt(e*e+f*f),0.001>j&&(j=0.001),a.K[a.u]=a.K[a.E]+25*a.o.C*e/j,a.N[a.u]=a.N[a.E]+25*a.o.C*f/j,0==ZE(a,a.u)||g==a.A[a.E]);++g);break;default:--a.u;er(a.o,"Are you trying to draw an hedgehog ?");a.o.P=9;return}a.A[a.u]=
405
- 1;++a.A[a.E];cF(a);a.t[a.v]=1;203==a.o.d&&(a.t[a.v]=2);204==a.o.d&&(a.t[a.v]=3);a.I[a.v]=a.E;a.J[a.v]=a.u;201==a.o.d&&VE(a,a.v);a.H[a.u][1]=a.E;a.H[a.E][a.A[a.E]]=a.u;a.L[a.v]=O(N(eE((a.K[a.E]+a.K[a.u])/2)));a.O[a.v]=O(N(eE((a.N[a.E]+a.N[a.u])/2)));a.M=a.K[a.u];a.P=a.N[a.u]}
406
- function TE(a,b){var c;a.G=a.E;c=0;if(233==a.o.d||237==a.o.d||236==a.o.d||239==a.o.d||251==a.o.d||252==a.o.d)Z(a,0),a.E=a.u,a.q=!0,Z(a,0),a.q=!1,a.E=a.u-1,Z(a,0),a.E=a.u-2,Z(a,0),237==a.o.d&&(a.c[a.u]=10,a.c[a.u-1]=10,a.c[a.u-2]=10),236==a.o.d&&(a.c[a.u]=9,a.c[a.u-1]=9,a.c[a.u-2]=9),239==a.o.d&&(a.c[a.u]=5,a.c[a.u-1]=5,a.c[a.u-2]=5,a.c[a.u-3]=8,a.t[a.v]=2,a.t[a.v-1]=2),252==a.o.d&&(a.c[a.u]=5,a.c[a.u-1]=5,a.c[a.u-2]=4,a.c[a.u-3]=8,a.t[a.v]=2,a.t[a.v-1]=2),251==a.o.d&&(a.c[a.u]=5,a.c[a.u-1]=5,a.c[a.u-
407
- 2]=5,a.c[a.u-3]=7,a.t[a.v]=2),c=4;else if(244==a.o.d)Z(a,0),a.c[a.u]=4,a.E=a.u,Z(a,0),a.c[a.u]=8,a.E=a.u,a.q=!0,Z(a,0),a.q=!1,a.E=a.u-1,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,a.E=a.u-2,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,c=5;else if(234==a.o.d)Z(a,0),a.c[a.u]=4,a.E=a.u,a.o.zb&&RE(a,a.E,1),Z(a,0),a.c[a.u]=5,a.t[a.v]=2,a.E=a.u-1,Z(a,0),a.c[a.u]=5,a.o.zb?(a.t[a.v]=1,RE(a,a.u,-1)):a.t[a.v]=2,c=3;else if(235==a.o.d)Z(a,0),a.E=a.u,Z(a,0),a.c[a.u]=5,a.E=a.u-1,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,c=3;else if(240==a.o.d)Z(a,0),a.E=
408
- a.u,Z(a,0),a.c[a.u]=5,a.E=a.u,Z(a,0),a.E=a.u-2,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,c=4;else if(260==a.o.d)Z(a,0),a.E=a.u,Z(a,0),a.c[a.u]=4,a.E=a.u-1,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,c=3;else if(261==a.o.d)Z(a,0),a.c[a.u]=4,a.E=a.u,Z(a,0),a.E=a.u,Z(a,0),a.c[a.u]=5,a.t[a.v]=2,c=3;else if(241==a.o.d)Z(a,0),a.c[a.u]=5,a.E=a.u,Z(a,0),a.E=a.u,Z(a,0),a.E=a.u-1,Z(a,0),a.t[a.v]=2,a.c[a.u]=5,c=4;else if(243==a.o.d)Z(a,0),a.c[a.u]=4,a.E=a.u,Z(a,0),a.E=a.u-1,Z(a,0),c=3;else if(238==a.o.d)Z(a,0),a.E=a.u,a.q=!0,Z(a,0),a.t[a.v]=
409
- 3,a.q=!1,c=2;else if(249==a.o.d)Z(a,0),a.E=a.u,Z(a,0),a.t[a.v]=2,a.c[a.u]=5,c=2;else if(250==a.o.d)Z(a,0),a.t[a.v]=2,a.c[a.u]=5,c=1;else if(245==a.o.d)Z(a,0),a.E=a.u,a.q=!0,Z(a,0),a.E=a.u,a.t[a.v]=3,Z(a,0),a.q=!1,c=3;else if(242==a.o.d)Z(a,0),a.E=a.u,a.q=!0,Z(a,0),a.t[a.v]=3,a.c[a.u]=4,a.q=!1,c=2;else if(254==a.o.d)Z(a,0),a.c[a.u]=9,c=1;else if(255==a.o.d)Z(a,0),a.c[a.u]=10,c=1;else if(256==a.o.d)Z(a,0),a.c[a.u]=11,c=1;else if(257==a.o.d)Z(a,0),a.c[a.u]=12,c=1;else if(258==a.o.d)Z(a,0),a.c[a.u]=4,
410
- c=1;else if(259==a.o.d)Z(a,0),a.c[a.u]=5,c=1;else if(246==a.o.d)Z(a,0),a.E=a.u,Z(a,0),c=2;else if(247==a.o.d)Z(a,0),a.E=a.u,Z(a,0),a.E=a.u,Z(a,0),c=3;else if(248==a.o.d)Z(a,0),a.E=a.u,Z(a,0),a.E=a.u,Z(a,0),a.E=a.u,Z(a,0),c=4;else if(253==a.o.d){var d,e,f,g,j,h,n,o,q,r,u;if(a.o.Qb){c=0;o=a.o.Qb;for(n=1;n<=o.z;++n)d=o.r[n][0],1==o.r[n][1]&&(c=d);d=a.u;n=a.E;Z(a,0);e=a.K[a.u];g=a.N[a.u];HE(a,a.u);e=a.K[n]-e;g=a.N[n]-g;h=Math.sqrt(e*e+g*g);g/=h;e/=h;for(h=1;h<=o.u;++h)WE(a),a.c[a.u]=o.c[h],a.B[a.u]=o.B[h],
411
- a.y[a.u]=o.y[h],a.K[a.u]=o.K[h],a.N[a.u]=o.N[h];for(h=1;h<=o.v;++h)cF(a),a.I[a.v]=o.I[h]+d,a.J[a.v]=o.J[h]+d,a.t[a.v]=o.t[h];GE(a);a.E=c+d;Z(a,0);o=a.K[a.u];r=a.N[a.u];HE(a,a.u);f=a.K[c+d]-o;j=a.N[c+d]-r;h=Math.sqrt(f*f+j*j);j/=h;f/=h;for(h=d+1;h<=a.u;++h)a.K[h]-=o,a.N[h]-=r,q=a.K[h]*f+a.N[h]*j,u=a.N[h]*f-a.K[h]*j,a.K[h]=q,a.N[h]=u,q=-a.K[h]*e+a.N[h]*g,u=-a.N[h]*e-a.K[h]*g,a.K[h]=q,a.N[h]=u,a.K[h]+=a.K[n],a.N[h]+=a.N[n];cF(a);a.I[a.v]=n;a.J[a.v]=c+d;GE(a);b&&(HE(a,n),JD(a))}c=4}qH(a,c);a.E=a.G;b&&
412
- (a.E=0)}
413
- function pH(a,b,c,d){var e,f,g,j,h;e=a.H[b][1];f=a.H[b][2];g=a.K[f]-a.K[e];j=-(a.N[f]-a.N[e]);h=Math.sqrt(g*g+j*j);0.001>h&&(h=0.001);j/=h;g/=h;1>(0>=(a.N[b]-a.N[e])*g+(a.K[b]-a.K[e])*j?0-((a.N[b]-a.N[e])*g+(a.K[b]-a.K[e])*j):(a.N[b]-a.N[e])*g+(a.K[b]-a.K[e])*j)?(g=a.K[b]-a.K[e],j=a.N[b]-a.N[e],h=Math.sqrt(g*g+j*j),0.001>h&&(h=0.001),j/=h,g/=h,d[0]=a.K[e]+h*g-c*j,d[1]=a.N[e]+c*g+h*j):(g=(a.K[e]+a.K[f])/2,e=(a.N[e]+a.N[f])/2,g=a.K[b]-g,j=a.N[b]-e,h=Math.sqrt(g*g+j*j),0.001>h&&(h=0.001),d[0]=a.K[b]+
414
- c*g/h,d[1]=a.N[b]+c*j/h)}
415
- function SE(a){var b,c,d,e,f,g,j,h,n,o,q,r,u;n=-1;j=6;switch(a.o.d){case 206:j=3;break;case 207:j=4;break;case 208:case 221:case 223:j=5;break;case 210:case 209:j=6;break;case 211:j=7;break;case 212:j=8;break;case 229:j=9}f=6.283185307179586/j;h=625*a.o.C*a.o.C/2/(1-Math.cos(f));h=Math.sqrt(h);if(0<a.E)if(2>a.A[a.E])rH(a,j,f,h);else if(!a.o.hb&&!a.o.Nb)n=a.E,Z(a,0),a.E=a.u,rH(a,j,f,h);else{a.o.Nb=!1;if(209==a.o.d||221==a.o.d||223==a.o.d){er(a.o,"ERROR - cannot add aromatic spiro ring !");a.o.P=9;
416
- return}for(d=1;d<=a.A[a.E];++d)if(b=a.t[oH(a,a.E,a.H[a.E][d])],2<d||1!=b){er(a.o,"ERROR - spiro ring not possible here !");a.o.P=9;return}b=y(HD,s,-1,2,1);pH(a,a.E,h,b);e=a.K[a.E]-b[0];g=a.N[a.E]-b[1];o=Math.sqrt(e*e+g*g);0.001>o&&(o=0.001);g/=o;e/=o;for(d=1;d<=j;++d)WE(a),q=f*d+1.5707963267948966,a.K[a.u]=b[0]+h*(Math.sin(q)*e-Math.cos(q)*g),a.N[a.u]=b[1]+h*(Math.cos(q)*e+Math.sin(q)*g)}else if(0<a.F){b=a.I[a.F];c=a.J[a.F];d=0;2==a.A[b]?a.H[b][1]!=c?d=a.H[b][1]:d=a.H[b][2]:2==a.A[c]&&(a.H[c][1]!=
417
- b?d=a.H[c][1]:d=a.H[c][2],o=b,b=c,c=o);0==d&&(a.H[b][1]!=c?d=a.H[b][1]:d=a.H[b][2]);e=a.K[c]-a.K[b];g=a.N[c]-a.N[b];o=Math.sqrt(e*e+g*g);0.001>o&&(o=0.001);g/=o;e/=o;q=o/2;u=h*Math.sin(0.5*(3.141592653589793-f));o=1;0<(a.N[d]-a.N[b])*e-(a.K[d]-a.K[b])*g&&(u=-u,o=0);r=a.K[b]+q*e-u*g;u=a.N[b]+u*e+q*g;for(d=1;d<=j;++d)WE(a),q=f*(d+0.5)+3.141592653589793*o,a.K[a.u]=r+h*(Math.sin(q)*e-Math.cos(q)*g),a.N[a.u]=u+h*(Math.cos(q)*e+Math.sin(q)*g),1==o?(d==j&&(a.K[a.u]=a.K[b],a.N[a.u]=a.N[b]),d==j-1&&(a.K[a.u]=
418
- a.K[c],a.N[a.u]=a.N[c])):(d==j-1&&(a.K[a.u]=a.K[b],a.N[a.u]=a.N[b]),d==j&&(a.K[a.u]=a.K[c],a.N[a.u]=a.N[c]))}else{b=0.5;6==j&&(b=0);for(d=1;d<=j;++d)WE(a),q=f*(d-b),a.K[a.u]=a.M+h*Math.sin(q),a.N[a.u]=a.P+h*Math.cos(q)}b=j;h=0;for(f=1;f<=b;++f)cF(a),a.t[a.v]=1,h=a.u-b+f,a.A[h]=2,a.I[a.v]=h,a.J[a.v]=h+1;a.J[a.v]=a.u-b+1;if(209==a.o.d){if(a.t[a.v-4]=2,a.t[a.v-2]=2,a.t[a.v]=2,0<a.F)if(1==a.t[a.F]){if(b=0,1<a.A[a.I[a.F]]&&(b=a.H[a.I[a.F]][1],h=a.I[a.F],b==a.J[a.F]&&(b=a.H[a.I[a.F]][2])),0==b&&1<a.A[a.J[a.F]]&&
419
- (b=a.H[a.J[a.F]][1],h=a.J[a.F],b==a.J[a.F]&&(b=a.H[a.J[a.F]][2])),0<b)for(f=1;f<=a.v;++f)if(a.I[f]==b&&a.J[f]==h||a.I[f]==h&&a.J[f]==b){1!=a.t[f]&&(a.t[a.v-4]=1,a.t[a.v-2]=1,a.t[a.v]=1,a.t[a.v-5]=2,a.t[a.v-3]=2,a.t[a.v-1]=3);break}}else a.t[a.v-4]=1,a.t[a.v-2]=1,a.t[a.v]=1,a.t[a.v-5]=2,a.t[a.v-3]=2,a.t[a.v-1]=2}else if(221==a.o.d||223==a.o.d)if(0<a.F){if(1==a.t[a.F]){b=!1;for(f=1;f<=a.A[a.I[a.F]];++f)if(h=a.H[a.I[a.F]][f],1<a.t[oH(a,a.I[a.F],h)]){b=!0;break}for(f=1;f<=a.A[a.J[a.F]];++f)if(h=a.H[a.J[a.F]][f],
420
- 1<a.t[oH(a,a.J[a.F],h)]){b=!0;break}b||(a.t[a.F]=2)}a.t[a.v-4]=2;a.c[a.u-2]=5}else 0<a.E?221==a.o.d?(a.t[a.v-4]=1,a.t[a.v-2]=1,a.t[a.v-1]=1,a.t[a.v-3]=2,a.t[a.v]=2,a.c[a.u-1]=5):(a.t[a.v-3]=1,a.t[a.v-2]=1,a.t[a.v]=1,a.t[a.v-4]=2,a.t[a.v-1]=2,a.c[a.u-2]=5):(a.t[a.v-3]=1,a.t[a.v-2]=1,a.t[a.v]=1,a.t[a.v-4]=2,a.t[a.v-1]=2,a.c[a.u-2]=5);h=y(I,m,-1,a.u+1,1);for(f=1;f<=j;++f)b=a.u-j+f,c=a.v-j+f,a.H[b][1]=b-1,a.H[b][2]=b+1,b=a.I[c],e=a.J[c],a.L[c]=O(N(eE((a.K[b]+a.K[e])/2))),a.O[c]=O(N(eE((a.N[b]+a.N[e])/
421
- 2)));a.H[a.u-j+1][1]=a.u;a.H[a.u][2]=a.u-j+1;for(f=a.u-j+1;f<=a.u;++f){h[f]=0;g=51;c=0;for(b=1;b<=a.u-j;++b)e=a.K[f]-a.K[b],d=a.N[f]-a.N[b],e=e*e+d*d,50>e&&e<g&&(g=e,c=b);0<c&&(0==a.E||c==a.E)&&(h[f]=c)}g=a.v-j;f=g+1;a:for(;f<=g+j;++f)if(b=a.I[f],e=a.J[f],0<h[b]&&0<h[e]){for(c=1;c<=g;++c)if(a.I[c]==h[b]&&a.J[c]==h[e]||a.J[c]==h[b]&&a.I[c]==h[e])continue a;cF(a);a.t[a.v]=a.t[f];a.I[a.v]=h[b];a.H[h[b]][++a.A[h[b]]]=h[e];a.J[a.v]=h[e];a.H[h[e]][++a.A[h[e]]]=h[b];a.L[a.v]=O(N(eE((a.K[a.I[a.v]]+a.K[a.J[a.v]])/
422
- 2)));a.O[a.v]=O(N(eE((a.N[a.I[a.v]]+a.N[a.J[a.v]])/2)))}else 0<h[b]?(cF(a),a.t[a.v]=a.t[f],a.I[a.v]=h[b],a.H[h[b]][++a.A[h[b]]]=e,a.J[a.v]=e,a.H[e][++a.A[e]]=h[b],a.L[a.v]=O(N(eE((a.K[a.I[a.v]]+a.K[a.J[a.v]])/2))),a.O[a.v]=O(N(eE((a.N[a.I[a.v]]+a.N[a.J[a.v]])/2)))):0<h[e]&&(cF(a),a.t[a.v]=a.t[f],a.I[a.v]=h[e],a.H[h[e]][++a.A[h[e]]]=b,a.J[a.v]=b,a.H[b][++a.A[b]]=h[e],a.L[a.v]=O(N(eE((a.K[a.I[a.v]]+a.K[a.J[a.v]])/2))),a.O[a.v]=O(N(eE((a.N[a.I[a.v]]+a.N[a.J[a.v]])/2))));d=a.u-j;for(f=a.u;f>d;--f)if(0<
423
- h[f]&&(HE(a,f),3==a.c[h[f]])){o=0;for(b=1;b<=a.A[h[f]];++b){e=a.H[h[f]][b];for(c=1;c<=a.v;++c)(a.I[c]==h[f]&&a.J[c]==e||a.I[c]==e&&a.J[c]==h[f])&&(o+=a.t[c])}if(4<o)for(c=g+1;c<=g+j;++c)a.t[c]=1}0<a.E&&qH(a,j);-1<n&&(a.E=n)}
424
- function rH(a,b,c,d){var e,f,g,j,h,n;0==a.A[a.E]?(e=0,f=1):(e=a.H[a.E][1],f=a.K[a.E]-a.K[e],e=a.N[a.E]-a.N[e],g=Math.sqrt(f*f+e*e),0.001>g&&(g=0.001),e/=g,f/=g);h=a.K[a.E]+d*f;n=a.N[a.E]+d*e;for(g=1;g<=b;++g)WE(a),j=c*g-1.5707963267948966,a.K[a.u]=h+d*(Math.sin(j)*f-Math.cos(j)*e),a.N[a.u]=n+d*(Math.cos(j)*f+Math.sin(j)*e)}function qH(a,b){var c,d;0==b&&(b=a.u);for(c=a.u;c>a.u-b;--c)d=ZE(a,c),0!=d&&(a.K[c]+=6,a.N[c]+=6)}
425
- function oH(a,b,c){var d;for(d=1;d<=a.v;++d)if(a.I[d]==b&&a.J[d]==c||a.I[d]==c&&a.J[d]==b)return d;return 0}function sH(a,b,c){var d,e,f,g;e=lh;for(f=g=0;;){++g;for(d=1;d<=a.u;++d)if(Gt(c[d])){e=c[d];break}for(d=1;d<=a.u;++d)Gt(c[d])&&!ht(c[d],e)&&(e=c[d]);for(d=1;d<=a.u;++d)At(c[d],e)&&(b[d]=g,c[d]=lh,++f);if(f==a.u)break}return g==a.u}
426
- function JD(a){var b,c,d;b=y(HD,s,-1,4,1);d=c=0;a.o&&a.o.D&&0<a.o.D.c&&(c=a.o.D.c-a.o.Z,d=a.o.D.b-3*a.o.Z);if(0>=c||0>=d)a.x=!0;else{ID(a,b);c=~~(c/2)-O(N(Math.round(b[0])));d=~~(d/2)-O(N(Math.round(b[1])));if(!a.o.rb)for(b=1;b<=a.u;++b)a.K[b]+=c,a.N[b]+=d;KD(a)}}
427
- function ID(a,b){var c,d,e,f,g;f=9999;d=-9999;g=9999;e=-9999;for(c=1;c<=a.u;++c)a.K[c]<f&&(f=a.K[c]),a.K[c]>d&&(d=a.K[c]),a.N[c]<g&&(g=a.N[c]),a.N[c]>e&&(e=a.N[c]);b[0]=f+(d-f)/2;b[1]=g+(e-g)/2;b[2]=d-f;b[3]=e-g;25>b[2]&&(b[2]=25);25>b[3]&&(b[3]=25)}
428
- function RE(a,b,c){var d;if(1==c)++a.B[b];else if(-1==c)--a.B[b];else switch(d=tH(a,b),-1==d&&0==c&&(0==a.B[b]?a.B[b]=1:1==a.B[b]?a.B[b]=-1:-1==a.B[b]&&(a.B[b]=0)),a.c[b]){case 2:2<d&&er(a.o,"Charge change not possible on this boron !");0==a.B[b]?a.B[b]=1:1==a.B[b]&&(a.B[b]=0);break;case 3:3<d?er(a.o,"Charge change not possible on this carbon !"):4>d&&(0==a.B[b]?a.B[b]=-1:-1==a.B[b]?a.B[b]=1:1==a.B[b]&&(a.B[b]=0));break;case 4:case 7:3<d?er(a.o,"Charge change not possible on multibonded N or P !"):
429
- 3==d&&0==a.B[b]?a.B[b]=1:3==d&&1==a.B[b]?a.B[b]=0:3>d&&0==a.B[b]?a.B[b]=1:3>d&&1==a.B[b]?a.B[b]=-1:3>d&&-1==a.B[b]&&(a.B[b]=0);break;case 5:case 8:case 13:2<d?er(a.o,"Charge change not possible on multibonded O or S !"):2==d&&0==a.B[b]?a.B[b]=1:2==d&&1==a.B[b]?a.B[b]=0:2>d&&0==a.B[b]?a.B[b]=-1:2>d&&-1==a.B[b]?a.B[b]=1:2>d&&1==a.B[b]&&(a.B[b]=0);break;case 9:case 10:case 11:case 12:0==d&&0==a.B[b]?a.B[b]=-1:0==d&&-1==a.B[b]?a.B[b]=0:er(a.o,"Charge change not possible on the halogen !");break;case 18:er(a.o,
430
- "Use X button to change charge on the X atom !")}}
431
- function tE(a,b){var c,d,e,f,g;f=0;g=!1;for(a.b=y(I,m,-1,a.u+1,1);;){for(e=1;e<=a.u;++e)if(0==a.b[e]){a.b[e]=++f;g=!0;break}if(!g)break;for(;g;){g=!1;for(e=1;e<=a.v;++e)c=a.I[e],d=a.J[e],0<a.b[c]&&0==a.b[d]?(a.b[d]=f,g=!0):0<a.b[d]&&0==a.b[c]&&(a.b[c]=f,g=!0)}}if(2>f||!b)return f;g=y(I,m,-1,f+1,1);for(c=1;c<=a.u;++c)++g[a.b[c]];e=0;for(c=d=1;c<=f;++c)g[c]>e&&(e=g[c],d=c);for(c=a.u;1<=c;--c)a.b[c]!=d&&HE(a,c);JD(a);er(a.o,"Smaller part(s) removed !");return 1}
432
- function ZE(a,b){var c,d,e,f,g;f=51;g=0;for(e=1;e<a.u;++e)b!=e&&(c=a.K[b]-a.K[e],d=a.N[b]-a.N[e],c=c*c+d*d,50>c&&c<f&&(f=c,g=e));return g}
433
- function dF(a){var b,c,d;for(d=1;d<=a.v;++d){b=a.I[d];c=a.J[d];if(1==a.B[b]&&-1==a.B[c]||-1==a.B[b]&&1==a.B[c])if(1==a.t[d]||2==a.t[d]){if(3!=a.c[b]&&3!=a.c[c]&&a.o.zb)continue;if(1==a.c[b]||1==a.c[c])continue;if(2==a.c[b]||2==a.c[c])continue;if(9==a.c[b]||10==a.c[b]||11==a.c[b]||12==a.c[b]||9==a.c[c]||10==a.c[c]||11==a.c[c]||12==a.c[c])continue;a.B[b]=0;a.B[c]=0;++a.t[d];JE(a)}1==a.B[b]&&1==a.B[c]&&(2==a.t[d]?a.t[d]=1:3==a.t[d]&&(a.t[d]=2),JE(a));4==a.t[d]&&(a.t[d]=1)}}
434
- function nH(a,b,c,d){var e,f;f=e=0;0<=a&&0<=b?e=1:0<=a&&0>b?e=2:0>a&&0>b?e=3:0>a&&0<=b&&(e=4);0<=c&&0<=d?f=1:0<=c&&0>d?f=2:0>c&&0>d?f=3:0>c&&0<=d&&(f=4);if(e<f)return 1;if(e>f)return-1;switch(e){case 1:case 4:return a<c?1:-1;case 2:case 3:return a>c?1:-1}return 0}function GE(a){var b;uH(a);b=a.t.length;a.L=y(I,m,-1,b,1);a.O=y(I,m,-1,b,1);KD(a);JE(a)}
435
- function WE(a){var b,c;++a.u;a.u>a.c.length-1&&(c=a.c.length+10,b=y(I,m,-1,c,1),IG(a.c,b,a.c.length),a.c=b,b=y(I,m,-1,c,1),IG(a.B,b,a.B.length),a.B=b,b=y(I,m,-1,c,1),IG(a.y,b,a.y.length),a.y=b,b=y(I,m,-1,c,1),IG(a.e,b,a.e.length),a.e=b,b=y(Os,s,1,c,0),IG(a.d,b,a.d.length),a.d=b,b=y(Os,s,1,c,0),IG(a.p,b,a.p.length),a.p=b,b=y(HD,s,-1,c,1),IG(a.K,b,a.K.length),a.K=b,b=y(HD,s,-1,c,1),IG(a.N,b,a.N.length),a.N=b,b=Ds([c,7]),IG(a.H,b,a.H.length),a.H=b,c=y(I,m,-1,c,1),IG(a.A,c,a.A.length),a.A=c);a.c[a.u]=
436
- 3;a.B[a.u]=0;a.e[a.u]=0;a.d[a.u]=null;a.y[a.u]=0}function jE(a,b,c,d,e,f,g){var j;j=O(N(eE(a.K[c]-d/2)));g||(j-=e-d);a=O(N(eE(a.N[c]-~~(f/2))));return new Cz(j-1-b,a-b,e+1+2*b,f+2*b)}
437
- function cF(a){var b,c;++a.v;a.v>a.t.length-1&&(b=a.t.length+10,c=y(I,m,-1,b,1),IG(a.I,c,a.I.length),a.I=c,c=y(I,m,-1,b,1),IG(a.J,c,a.J.length),a.J=c,c=y(I,m,-1,b,1),IG(a.t,c,a.t.length),a.t=c,c=y(I,m,-1,b,1),IG(a.C,c,a.C.length),a.C=c,c=y(I,m,-1,b,1),IG(a.L,c,a.L.length),a.L=c,c=y(I,m,-1,b,1),IG(a.O,c,a.O.length),a.O=c,b=y(Os,s,1,b,0),IG(a.f,b,a.f.length),a.f=b);a.t[a.v]=1;a.C[a.v]=0;a.f[a.v]=null}
438
- function ME(a,b){var c,d,e,f,g,j,h;if(0==a.u)return l;j=b;79<b.length&&(j=b.substr(0,76)+"...");j+=(fD(),aa);j+="JME 2013-10-12 "+new WG+"\n \n";j+=LE(a.u,3)+LE(a.v,3);j+=" 0 0 0 0 0 0 0 0999 V2000\n";g=-1.7976931348623157E308;c=1.7976931348623157E308;for(e=1;e<=a.u;++e)a.N[e]>g&&(g=a.N[e]),a.K[e]<c&&(c=a.K[e]);for(e=1;e<=a.u;++e){j+=iF(0.055999999999999994*(a.K[e]-c),10,4)+iF(0.055999999999999994*(g-a.N[e]),10,4)+iF(0,10,4);h=iE(a,e);1==h.length?h+=" ":2==h.length?h+=ba:3<h.length&&(h="Q ");
439
- j+=ba+h;d=0;0<a.B[e]&&4>a.B[e]?d=4-a.B[e]:0>a.B[e]&&-4<a.B[e]&&(d=4-a.B[e]);h=" 0"+LE(d,3)+" 0 0 0 0 0 0 0";f=-1;for(d=1;d<=a.z;++d)if(a.r[d][0]==e){f=a.r[d][1];break}-1<f?h+=LE(f,3):h+=" 0";j+=h+" 0 0\n"}for(e=1;e<=a.v;++e)g=a.t[e],1==a.t[e]?g=1:vH(a,e)&&(g=2),c=LE(a.I[e],3)+LE(a.J[e],3),d=0,1==a.t[e]&&1==a.C[e]?d=1:1==a.t[e]&&2==a.C[e]&&(d=6),1==a.t[e]&&3==a.C[e]&&(d=1,c=LE(a.J[e],3)+LE(a.I[e],3)),1==a.t[e]&&4==a.C[e]&&(d=6,c=LE(a.J[e],3)+LE(a.I[e],3)),j+=c+LE(g,3)+LE(d,3)+" 0 0 0\n";
440
- for(e=1;e<=a.u;++e)0!=a.B[e]&&(j+="M CHG 1"+LE(e,4)+LE(a.B[e],4)+aa);return j+"M END\n"}
441
- function kF(a){var b,c,d,e,f,g,j,h,n,o,q,r,u,v,D,E,J,R,sb,W,M,da,Jc,fg,zb,Md,Nd,Od,Xa,Kc;q=y(I,m,-1,a.u+10,1);r=y(I,m,-1,a.u+10,1);n=y(I,m,-1,a.u+1,1);o=y(I,m,-1,7,1);zb=y(I,m,-1,a.u+1,1);v=y(wH,s,-1,a.u+1,2);D=y(wH,s,-1,a.v+1,2);da=0;if(0==a.u)return l;tE(a,!0);fg=!0;for(h=1;h<=a.v;++h)if(9==a.t[h]){fg=!1;break}if(a.o.t&&fg){xH(a);dF(a);yH(a,D);zH(a,v,D);var Jb,ud,hf,dc,ye,vd,wd,fb,DI,Ud,w,Aa,Om,Pm,kt,of,Pa,Qm,Rm,Nc,Sm;Jb=y(I,m,-1,a.u+1,1);ud=y(I,m,-1,a.u+1,1);fb=y(AH,s,-1,a.u+1,3);var lt=a.u,Tm,
442
- vh,mt,rg,Dj,Fe,pf;Dj=y(AH,s,-1,lt+2,3);Fe=y(I,m,-1,100,1);pf=5;rg=0;Fe[0]=3;Dj[1]=nh;Dj[2]=oh;mt=2;if(!(3>lt))for(;pf<Fe[rg]*Fe[rg];){vh=0;for(Tm=!0;Tm&&vh<=rg&&pf>=Fe[vh]*Fe[vh];)0==pf%Fe[vh]?Tm=!1:++vh;if(Tm){Dj[++mt]=Dt(pf);if(mt>=lt)break;rg<Fe.length-1&&(++rg,Fe[rg]=pf)}pf+=2}for(w=1;w<=a.u;++w){for(Aa=Rm=1;Aa<=a.v;++Aa)(a.I[Aa]==w||a.J[Aa]==w)&&(Rm*=a.i[Aa]);Qm=a.c[w];18==Qm&&(Sm=a.p[w],vd=Sm.charCodeAt(0)-65+1,wd=0,1<Sm.length&&(wd=Sm.charCodeAt(1)-97),0>vd&&(vd=0),0>wd&&(wd=0),Qm=28*vd+wd);
443
- of=0;-2>a.B[w]?of=1:-2==a.B[w]?of=2:-1==a.B[w]?of=3:1==a.B[w]?of=4:2==a.B[w]?of=5:2<a.B[w]&&(of=6);Nc=1;fb[w]=Dt(Rm);Nc*=126;fb[w]=yt(fb[w],Dt(a.y[w]*Nc));Nc*=7;fb[w]=yt(fb[w],Dt(of*Nc));Nc*=7;fb[w]=yt(fb[w],Dt(Qm*Nc));Nc*=783;fb[w]=yt(fb[w],Dt(a.A[w]*Nc))}for(ye=0;!sH(a,Jb,fb);){kt=!1;for(w=1;w<=a.u;++w)Jb[w]!=ud[w]&&(ud[w]=Jb[w],kt=!0);if(kt){for(w=1;w<=a.u;++w){fb[w]=mh;for(Aa=1;Aa<=a.A[w];++Aa)fb[w]=Ht(fb[w],Dj[Jb[a.H[w][Aa]]])}ye=0}else if(0<ye){for(w=1;w<=a.u;++w)fb[w]=mh;w=1;a:for(;w<=a.u-
444
- 1;++w)for(Aa=w+1;Aa<=a.u;++Aa)if(Jb[w]==Jb[Aa]){fb[w]=nh;break a}}else{for(w=1;w<=a.u;++w){fb[w]=mh;for(Aa=1;Aa<=a.A[w];++Aa)hf=a.H[w][Aa],fb[w]=Ht(fb[w],Dt(a.c[hf]*a.i[oH(a,w,hf)]))}ye=1}sH(a,Jb,fb);for(w=1;w<=a.u;++w)fb[w]=Dt(ud[w]*a.u+Jb[w])}for(w=1;w<=a.u;++w)ud[w]=Jb[w];for(Pa=1;Pa<=a.u;++Pa)for(w=1;w<=a.u;++w)if(ud[w]==Pa){a.c[0]=a.c[w];a.B[0]=a.B[w];a.K[0]=a.K[w];a.N[0]=a.N[w];a.A[0]=a.A[w];a.c[w]=a.c[Pa];a.B[w]=a.B[Pa];a.K[w]=a.K[Pa];a.N[w]=a.N[Pa];a.A[w]=a.A[Pa];a.c[Pa]=a.c[0];a.B[Pa]=a.B[0];
445
- a.K[Pa]=a.K[0];a.N[Pa]=a.N[0];a.A[Pa]=a.A[0];ud[w]=ud[Pa];ud[Pa]=Pa;a.p[0]=a.p[w];a.p[w]=a.p[Pa];a.p[Pa]=a.p[0];a.e[0]=a.e[w];a.e[w]=a.e[Pa];a.e[Pa]=a.e[0];a.d[0]=a.d[w];a.d[w]=a.d[Pa];a.d[Pa]=a.d[0];a.y[0]=a.y[w];a.y[w]=a.y[Pa];a.y[Pa]=a.y[0];break}for(w=1;w<=a.z;++w)a.r[w][0]=Jb[a.r[w][0]];for(w=1;w<=a.v;++w)a.I[w]=Jb[a.I[w]],a.J[w]=Jb[a.J[w]],a.I[w]>a.J[w]&&(Ud=a.I[w],a.I[w]=a.J[w],a.J[w]=Ud,1==a.C[w]?a.C[w]=3:2==a.C[w]?a.C[w]=4:3==a.C[w]?a.C[w]=1:4==a.C[w]&&(a.C[w]=2));for(w=1;w<a.v;++w){Pm=Om=
446
- a.u;dc=0;for(Aa=w;Aa<=a.v;++Aa)a.I[Aa]<Om?(Om=a.I[Aa],Pm=a.J[Aa],dc=Aa):a.I[Aa]==Om&&a.J[Aa]<Pm&&(Pm=a.J[Aa],dc=Aa);Ud=a.I[w];a.I[w]=a.I[dc];a.I[dc]=Ud;Ud=a.J[w];a.J[w]=a.J[dc];a.J[dc]=Ud;Ud=a.t[w];a.t[w]=a.t[dc];a.t[dc]=Ud;Ud=a.C[w];a.C[w]=a.C[dc];a.C[dc]=Ud;DI=a.f[w];a.f[w]=a.f[dc];a.f[dc]=DI}GE(a);JE(a);yH(a,D);zH(a,v,D)}else{yH(a,D);a.i=y(I,m,-1,a.v+1,1);for(u=1;u<=a.v;++u)a.i[u]=a.t[u]}c=1;a.b=y(I,m,-1,a.u+1,1);Kc=1;a.b[1]=1;for(W=0;;){M=0;for(u=1;u<=a.A[c];++u)if(g=a.H[c][u],0<a.b[g]){if(!(a.b[g]>
447
- a.b[c])&&g!=zb[c]){Jc=!0;for(J=1;J<=da;++J)if(q[J]==c&&r[J]==g||q[J]==g&&r[J]==c){Jc=!1;break}Jc&&(++da,q[da]=c,r[da]=g)}}else o[++M]=g;if(0==M){if(Kc==a.u)break;c=n[W--]}else if(1==M)zb[o[1]]=c,c=o[1],a.b[c]=++Kc;else{n[++W]=c;e=0;for(u=1;u<=M;++u)if(h=oH(a,o[u],c),!D[h]){e=o[u];break}if(0==e)for(u=1;u<=M;++u)if(h=oH(a,o[u],c),2==a.i[h]||3==a.i[h]){e=o[u];break}0==e&&(e=o[1]);zb[e]=c;c=e;a.b[e]=++Kc}}zb=y(I,m,-1,a.u+1,1);b=y(I,m,-1,a.u+1,1);R=y(wH,s,-1,a.u+1,2);Md=y(wH,s,-1,a.u+1,2);f=Kc=W=0;for(u=
448
- 1;u<=a.u;++u)if(1==a.b[u]){c=u;break}a:for(;;){0<f&&(zb[c]=f);b[++Kc]=c;for(a.b[c]=0;;){M=e=0;sb=a.u+1;u=1;b:for(;u<=a.A[c];++u){g=a.H[c][u];for(E=1;E<=da;++E)if(q[E]==g&&r[E]==c||q[E]==c&&r[E]==g)continue b;0<a.b[g]&&(++M,a.b[g]<sb&&(e=g,sb=a.b[g]))}if(0==e){if(0==W)break a;Md[c]=!0;c=n[W--]}else break}f=c;c=e;1<M&&(n[++W]=f,R[e]=!0)}Nd=y(I,m,-1,a.v+1,1);Od=y(I,m,-1,a.u+1,1);if(a.o.Pb){var FI=zb,SM=da,nt,GI,wh,Ge,ot,pt,Oa,Ej,qt;wh=y(I,m,-1,a.u+1,1);for(Oa=1;Oa<=a.u;++Oa)wh[b[Oa]]=Oa;ot=y(wH,s,-1,
449
- a.v+1,2);for(Oa=1;Oa<=a.u;++Oa)nt=b[Oa],GI=FI[nt],Ge=oH(a,nt,GI),0!=Ge&&(BH(a,Ge,wh,Nd,D),ot[Ge]=!0);for(Oa=1;Oa<=a.v;++Oa)ot[Oa]||BH(a,Oa,wh,Nd,D);Oa=1;a:for(;Oa<=a.u;++Oa)if(!(2>a.A[Oa]||4<a.A[Oa])){pt=qt=0;for(Ej=1;Ej<=a.A[Oa];++Ej){Ge=oH(a,Oa,a.H[Oa][Ej]);if(5==a.i[Ge])continue a;1==a.t[Ge]&&0!=CH(a,Ge,Oa)&&++qt;2==a.t[Ge]&&(pt=a.H[Oa][Ej])}if(0!=qt)if(0<pt){var ka=a,II=Oa,qf=wh,Zc=Od,sc=void 0,Fj=void 0,Oc=void 0,He=void 0,Pc=void 0,Um=void 0,Vm=void 0,Wm=void 0,Vd=void 0,$c=void 0,ad=void 0,
450
- rt=void 0,Gj=void 0,Wd=void 0,Hj=void 0,Ie=void 0,Ij=void 0,st=void 0,Jj=void 0,Je=void 0,JI=void 0,rf=void 0,KI=void 0,tt=void 0,Kj=void 0,sf=void 0,ad=1,Fj=II,sc=y(I,m,-1,ka.u+1,1);for(sc[1]=II;;){rt=!1;for($c=1;$c<=ka.A[Fj];++$c)if(Oc=ka.H[Fj][$c],!(Oc==sc[1]||Oc==sc[ad-1]))if(He=oH(ka,Fj,Oc),2==ka.t[He]&&5!=ka.i[He]){Fj=sc[++ad]=Oc;rt=!0;break}if(!rt)break}if(!(0==ad%2||2>ka.A[sc[ad]]||3<ka.A[sc[ad]])){sf=sc[1];Pc=sc[~~((ad+1)/2)];Vd=sc[ad];rf=Je=Ie=Wd=0;tt=st=!1;for($c=1;$c<=ka.A[sf];++$c)Oc=
451
- ka.H[sf][$c],He=oH(ka,sf,Oc),1!=ka.t[He]||5==ka.i[He]||(0==Wd?Wd=Oc:Ie=Oc);0<qf[Ie]&&qf[Wd]>qf[Ie]&&(Um=Wd,Wd=Ie,Ie=Um);Gj=Wd;0==Wd&&(Gj=Ie,st=!0);for($c=1;$c<=ka.A[Vd];++$c)Oc=ka.H[Vd][$c],He=oH(ka,Vd,Oc),1!=ka.t[He]||5==ka.i[He]||(0==Je?Je=Oc:rf=Oc);0<qf[rf]&&qf[Je]>qf[rf]&&(Um=Je,Je=rf,rf=Um);Jj=Je;0==Je&&(Jj=rf,tt=!0);Hj=CH(ka,oH(ka,sf,Wd),sf);Ij=CH(ka,oH(ka,sf,Ie),sf);JI=CH(ka,oH(ka,Vd,Je),Vd);KI=CH(ka,oH(ka,Vd,rf),Vd);1<(0>Hj+Ij?-(Hj+Ij):Hj+Ij)||0!=JI||0!=KI?er(ka.o,"Bad stereoinfo on allene !"):
452
- (Vm=ka.K[sc[ad-1]]-ka.K[Vd],Wm=ka.N[sc[ad-1]]-ka.N[Vd],Kj=Math.sqrt(Vm*Vm+Wm*Wm),0.001>Kj&&(Kj=0.001),0<(ka.N[Jj]-ka.N[sc[ad-1]])*(Vm/Kj)-(ka.K[Jj]-ka.K[sc[ad-1]])*(Wm/Kj)?Zc[Pc]=1:Zc[Pc]=-1,st&&(Zc[Pc]*=-1),tt&&(Zc[Pc]*=-1),Gj==Wd&&0>Hj&&(Zc[Pc]*=-1),Gj==Ie&&0>Ij&&(Zc[Pc]*=-1),qf[Gj]>qf[Jj]&&(Zc[Pc]*=-1))}}else b:{var ub=a,$a=Oa,ut=FI,LI=wh,MI=q,NI=r,TM=SM,Xm=Od,Ym=void 0,bd=void 0,vt=void 0,xh=void 0,Ea=void 0,yh=void 0,yd=void 0,Lj=void 0,Xd=void 0,Qb=void 0,ha=void 0,fa=void 0,Ke=void 0,Zm=void 0,
453
- cd=void 0,K=void 0,$m=void 0,fa=y(I,m,-1,4,1),Zm=y(I,m,-1,4,1),Mj=void 0,dd=void 0,an=void 0,bn=void 0,wt=void 0,Nj=void 0,Nj=-1;0<ut[$a]&&(fa[++Nj]=ut[$a]);for(dd=1;dd<=TM;++dd)MI[dd]==$a&&(fa[++Nj]=NI[dd]),NI[dd]==$a&&(fa[++Nj]=MI[dd]);for(dd=Nj+1;dd<ub.A[$a];++dd){wt=ub.u+1;an=1;c:for(;an<=ub.A[$a];++an){Mj=ub.H[$a][an];for(bn=0;bn<dd;++bn)if(Mj==fa[bn])continue c;LI[Mj]<wt&&(wt=LI[Mj],fa[dd]=Mj)}}0==ut[$a]&&0<ub.y[$a]?(fa[3]=fa[2],fa[2]=fa[1],fa[1]=fa[0],fa[0]=-1):0<ub.y[$a]&&(fa[3]=fa[2],fa[2]=
454
- fa[1],fa[1]=-1);for(Ea=Lj=yh=xh=$m=yd=Qb=0;4>Ea;++Ea)0>=fa[Ea]||(Ym=oH(ub,$a,fa[Ea]),Zm[Ea]=CH(ub,Ym,$a),0<Zm[Ea]?(++Qb,$m=fa[Ea],yh=fa[Ea]):0>Zm[Ea]?(++yd,xh=fa[Ea],yh=fa[Ea]):Lj=fa[Ea]);Xd=Qb+yd;K=y(I,m,-1,4,1);cd=0;if(3==ub.A[$a]){if(1==Qb&&1==yd||3==Xd&&0<Qb&&0<yd){er(ub.o,"Error in C3H stereospecification !");break b}Ke=fa[0];1==Xd?Ke=yh:2==Xd&&(Ke=Lj);ha=mH(ub,$a,Ke,fa);K[0]=yh;K[1]=-1;K[2]=ha[2];K[3]=ha[1];0<Qb?cd=1:cd=-1}else if(4==ub.A[$a])if(1==Xd)ha=mH(ub,$a,yh,fa),K[0]=ha[0],K[1]=ha[3],
455
- K[2]=ha[2],K[3]=ha[1],0<Qb?cd=1:cd=-1;else{Ke=fa[0];1<Lj&&(Ke=Lj);1==Qb?Ke=$m:1==yd&&(Ke=xh);ha=mH(ub,$a,Ke,fa);bd=y(I,m,-1,4,1);for(Ea=0;4>Ea;++Ea)Ym=oH(ub,$a,ha[Ea]),bd[Ea]=CH(ub,Ym,$a);if(4==Xd){if(0==Qb||0==yd){er(ub.o,"Error in C4 stereospecification !");break b}if(1==Qb||1==yd)K[0]=ha[0],K[1]=ha[3],K[2]=ha[2],K[3]=ha[1],cd=bd[0];else{for(Ea=0;4>Ea;++Ea)-1==bd[Ea]&&(bd[Ea]=0);Xd=2}}else if(3==Xd)if(3==Qb||3==yd)K[0]=ha[0],K[1]=ha[3],K[2]=ha[2],K[3]=ha[1],0<Qb?cd=-1:cd=1;else{1==Qb?Qb=vt=1:yd=
456
- vt=-1;for(Ea=0;4>Ea;++Ea)bd[Ea]==vt&&(bd[Ea]=0);Xd=2}if(2==Xd)if(1==Qb&&1==yd)ha[1]==xh?(ha[1]=ha[2],ha[2]=ha[3]):ha[2]==xh&&(ha[2]=ha[3]),K[0]=$m,K[1]=xh,K[2]=ha[2],K[3]=ha[1],cd=1;else{if(bd[0]==bd[1]||bd[1]==bd[2]){er(ub.o,"Error in C4 stereospecification ! 2/0r");break b}0!=bd[0]?(K[0]=ha[0],K[1]=ha[2],K[2]=ha[1],K[3]=ha[3]):(K[0]=ha[1],K[1]=ha[3],K[2]=ha[2],K[3]=ha[0]);1<Qb?cd=1:cd=-1}}var ob=void 0;fa[0]==K[1]?(ob=K[0],K[0]=K[1],K[1]=ob,ob=K[2],K[2]=K[3],K[3]=ob):fa[0]==K[2]?(ob=K[2],K[2]=K[0],
457
- K[0]=ob,ob=K[1],K[1]=K[3],K[3]=ob):fa[0]==K[3]&&(ob=K[3],K[3]=K[0],K[0]=ob,ob=K[1],K[1]=K[2],K[2]=ob);fa[1]==K[2]?(ob=K[1],K[1]=K[2],K[2]=ob,ob=K[2],K[2]=K[3],K[3]=ob):fa[1]==K[3]&&(ob=K[1],K[1]=K[3],K[3]=ob,ob=K[2],K[2]=K[3],K[3]=ob);K[2]==fa[2]?Xm[$a]=1:K[2]==fa[3]?Xm[$a]=-1:er(ub.o,"Error in stereoprocessing ! - t30");Xm[$a]*=cd}}}Xa=new HG;j=y(I,m,-1,a.u+1,1);for(u=1;u<=a.u;++u)j[b[u]]=u;for(u=1;u<=a.u;++u){c=b[u];R[c]&&(Xa.b.b+=ua);0<zb[u]&&DH(a,c,zb[c],Xa,Nd);var zh=v[c],Lb=void 0,Oj=void 0,
458
- Ah=void 0,U=void 0,U=Mc,Lb=!1;0!=a.B[c]&&(Lb=!0);0!=Od[c]&&(Lb=!0);Ah=-1;for(Oj=1;Oj<=a.z;++Oj)if(a.r[Oj][0]==c){Ah=a.r[Oj][1];break}-1<Ah&&(Lb=!0);a.o.Ob&&0<a.e[c]&&(Lb=!0,Ah=1);switch(a.c[c]){case 2:U=Db;break;case 3:zh?U="c":U=Hb;break;case 4:zh?(U=Ef,0<a.y[c]&&(Lb=!0)):U=hc;break;case 5:zh?U="o":U=oc;break;case 7:zh?(U="p",0<a.y[c]&&(Lb=!0)):U=qc;break;case 8:zh?U=sg:U=Cc;break;case 13:zh?U=wg:U=Ec;Lb=!0;break;case 6:U=Fc;Lb=!0;break;case 9:U=Tb;break;case 10:U=Nb;break;case 11:U=Gb;break;case 12:U=
459
- Zb;break;case 1:U=Xb;Lb=!0;break;case 19:U=rc;Lb=!0;break;case 20:U=tc;Lb=!0;break;case 21:U=uc;Lb=!0;break;case 22:U=vc;Lb=!0;break;case 18:Lb=!0,U=a.p[c],(G(U,wa)||G(U,Wc)||G(U,yb))&&(Lb=!1)}Lb&&(U=Qc+U,1==Od[c]?U+=wb:-1==Od[c]&&(U+=xb),1==a.y[c]?U+=Xb:1<a.y[c]&&(U+=Xb+a.y[c]),0!=a.B[c]&&(0<a.B[c]?U+=xa:U+=Ba,1<Yj(a.B[c])&&(U+=Yj(a.B[c]))),-1<Ah&&(U+=mb+Ah),U+=Tc);xn(Xa.b,U);for(E=1;E<=da;++E)if(q[E]==c||r[E]==c)d=r[E],d==c&&(d=q[E]),j[c]<j[d]&&DH(a,q[E],r[E],Xa,Nd),9<E&&(Xa.b.b+="%"),wn(Xa,l+(new T(E)).b);
460
- Md[c]&&(Xa.b.b+=va)}return Xa.b.b}function jF(a){a=new uD(a);GE(a);return a}
461
- function HE(a,b){var c,d,e,f;f=0;for(e=1;e<=a.v;++e)c=a.I[e],d=a.J[e],c!=b&&d!=b&&(++f,a.I[f]=c,c>b&&--a.I[f],a.J[f]=d,d>b&&--a.J[f],a.t[f]=a.t[e],a.C[f]=a.C[e],a.L[f]=a.L[e],a.O[f]=a.O[e],a.f[f]=a.f[e]);a.v=f;for(e=b;e<a.u;++e){a.c[e]=a.c[e+1];a.B[e]=a.B[e+1];a.K[e]=a.K[e+1];a.N[e]=a.N[e+1];a.y[e]=a.y[e+1];a.e[e]=a.e[e+1];a.d[e]=a.d[e+1];a.A[e]=a.A[e+1];a.p[e]=a.p[e+1];for(f=1;f<=a.A[e];++f)a.H[e][f]=a.H[e+1][f]}--a.u;if(0==a.u)LD(a.o);else{for(e=1;e<=a.u;++e){d=0;for(f=1;f<=a.A[e];++f)c=a.H[e][f],
462
- c==b?++a.y[e]:(c>b&&--c,a.H[e][++d]=c);a.A[e]=d}e=1;a:for(;e<=a.z;++e)if(a.r[e][0]==b){for(f=e;f<a.z;++f)a.r[f][0]=a.r[f+1][0],a.r[f][1]=a.r[f+1][1];--a.z;break a}for(e=1;e<=a.z;++e)a.r[e][0]>b&&--a.r[e][0]}}
463
- function IE(a,b){var c,d,e,f;c=a.I[b];d=a.J[b];for(e=b;e<a.v;++e)a.I[e]=a.I[e+1],a.J[e]=a.J[e+1],a.t[e]=a.t[e+1],a.C[e]=a.C[e+1],a.L[e]=a.L[e+1],a.O[e]=a.O[e+1],a.f[e]=a.f[e+1];--a.v;f=0;for(e=1;e<=a.A[c];++e)a.H[c][e]!=d&&(a.H[c][++f]=a.H[c][e]);a.A[c]=f;f=0;for(e=1;e<=a.A[d];++e)a.H[d][e]!=c&&(a.H[d][++f]=a.H[d][e]);a.A[d]=f;c<d&&(f=c,c=d,d=f);0==a.A[c]&&HE(a,c);0==a.A[d]&&HE(a,d)}
464
- function xH(a){var b,c,d;if(!a.o.O){c=a.u;a:for(;1<=c;--c)if(d=a.H[c][1],1==a.c[c]&&1==a.A[c]&&0==a.B[c]&&1!=a.c[d]&&18>a.c[d]){for(b=1;b<=a.z;++b)if(a.r[b][0]==c)continue a;b=oH(a,c,d);1==a.t[b]&&(0==a.C[b]||!a.o.Pb)&&HE(a,c)}}}function uH(a){var b;b=a.c.length;a.H=Ds([b,7]);a.A=y(I,m,-1,b,1);for(b=1;b<=a.u;++b)a.A[b]=0;for(b=1;b<=a.v;++b)6>a.A[a.I[b]]&&(a.H[a.I[b]][++a.A[a.I[b]]]=a.J[b]),6>a.A[a.J[b]]&&(a.H[a.J[b]][++a.A[a.J[b]]]=a.I[b])}
465
- function zH(a,b,c){var d,e,f,g,j,h,n,o,q;a.i=y(I,m,-1,a.v+1,1);q=y(wH,s,-1,a.u+1,2);for(h=1;h<=a.u;++h){q[h]=!1;b[h]=!1;a:{d=void 0;for(d=1;d<=a.A[h];++d)if(c[oH(a,h,a.H[h][d])]){d=!0;break a}d=!1}if(d&&!(3<a.A[h]+a.y[h]))switch(a.c[h]){case 3:case 4:case 7:case 5:case 8:case 13:q[h]=!0;break;case 18:0==a.p[h].indexOf(yb)?q[h]=!1:q[h]=!0}}if(a.n){var r;d=y(wH,s,-1,a.u+1,2);e=!1;for(h=1;h<=a.v;++h)f=a.I[h],g=a.J[h],d[f]=!0,d[g]=!0,(18==a.c[f]||18==a.c[g])&&(e=!0);if(e){h=1;a:for(;h<=a.v;++h)if(c[h]){f=
466
- a.I[h];g=a.J[h];e=y(wH,s,-1,a.u+1,2);for(n=1;n<=a.A[f];++n)j=a.H[f][n],j!=g&&d[j]&&(e[j]=!0);for(r=!1;;){for(n=1;n<=a.u;++n){r=!1;if(e[n]&&d[n]&&n!=f)for(o=1;o<=a.A[n];++o){j=a.H[n][o];if(j==g){for(f=1;f<=a.u;++f)e[f]&&(5==a.c[f]&&(a.c[f]=18,a.p[f]="#8"),4==a.c[f]&&(a.c[f]=18,a.p[f]="#7"),8==a.c[f]&&(a.c[f]=18,a.p[f]="#16"));continue a}!e[j]&&d[j]&&(r=e[j]=!0)}if(r)break}if(!r)break}}}}for(j=1;j<=a.v;++j)1==a.t[j]?a.i[j]=1:vH(a,j)?a.i[j]=2:3==a.t[j]&&(a.i[j]=3);j=1;a:for(;j<=a.v;++j)if(c[j]&&(f=a.I[j],
467
- g=a.J[j],q[f]&&q[g])){d=y(wH,s,-1,a.u+1,2);for(h=1;h<=a.A[f];++h)e=a.H[f][h],e!=g&&q[e]&&(d[e]=!0);for(o=!1;;){for(h=1;h<=a.u;++h){o=!1;if(d[h]&&q[h]&&h!=f)for(n=1;n<=a.A[h];++n){e=a.H[h][n];if(e==g){b[f]=!0;b[g]=!0;a.i[j]=5;continue a}!d[e]&&q[e]&&(o=d[e]=!0)}if(o)break}if(!o)break}}}function KD(a){var b,c,d;for(d=1;d<=a.v;++d)b=a.I[d],c=a.J[d],a.L[d]=O(N(eE((a.K[b]+a.K[c])/2))),a.O[d]=O(N(eE((a.N[b]+a.N[c])/2)))}function yH(a,b){var c;for(c=1;c<=a.v;++c)kE(a,a.I[c],a.J[c])?b[c]=!1:b[c]=!0}
468
- function iE(a,b){var c;c=(fD(),lD)[a.c[b]];18==a.c[b]&&(c=a.p[b]);return c}function vH(a,b){return 2==a.t[b]?!0:!1}function kE(a,b,c){var d,e,f,g;g=1;a.b=y(I,m,-1,a.u+1,1);for(d=1;d<=a.u;++d)a.b[d]=0;for(d=a.b[b]=1;d<=a.A[b];++d)a.H[b][d]!=c&&(a.b[a.H[b][d]]=++g);for(f=!1;;){for(d=1;d<=a.u;++d){f=!1;if(0<a.b[d]&&d!=b)for(e=1;e<=a.A[d];++e)0==a.b[a.H[d][e]]&&(a.b[a.H[d][e]]=++g,f=!0);if(f)break}if(!f)break}return 0==a.b[c]}
469
- function UE(a){var b,c;a.o.S=!0;if(a.o.Ob)a.k=-1,0==a.e[a.E]?a.e[a.E]=4:a.e[a.E]=0;else{for(b=1;b<=a.z;++b)if(a.E==a.r[b][0]){if(-1==a.o.z){for(;b<a.z;++b)a.r[b][0]=a.r[b+1][0],a.r[b][1]=a.r[b+1][1];--a.z}else c=a.o.z,a.o.r&&(a.o.hb||++a.s,c=a.s),a.r[b][1]=c;return}b=a.r.length;++a.z>b-1&&(b=Ds([b+5,2]),IG(a.r,b,a.r.length),a.r=b);a.r[a.z][0]=a.E;c=a.o.z;a.o.r&&(a.o.hb||++a.s,c=a.s);a.r[a.z][1]=c}}function EE(a){var b;a.z=0;a.s=0;kF(a);for(b=1;b<=a.u;++b)a.E=b,UE(a);a.E=0}
470
- function FE(a){var b,c;b=y(HD,s,-1,4,1);ID(a,b);c=a.o.D.c;a.o.A||(c-=a.o.Z);return b[0]<~~(c/2)-24?1:b[0]>~~(c/2)+24?3:2}function BD(a,b){var c,d,e,f,g,j,h,n;c=y(HD,s,-1,4,1);ID(a,c);d=c[0];e=c[1];j=Math.sin(3.141592653589793*b/180);f=Math.cos(3.141592653589793*b/180);for(g=1;g<=a.u;++g)h=a.K[g]*f+a.N[g]*j,n=-a.K[g]*j+a.N[g]*f,a.K[g]=h,a.N[g]=n;ID(a,c);for(g=1;g<=a.u;++g)a.K[g]+=d-c[0],a.N[g]+=e-c[1]}
471
- function gF(a){var b,c,d,e,f;e=f=0;for(d=1;d<=a.v;++d)b=a.K[a.I[d]]-a.K[a.J[d]],c=a.N[a.I[d]]-a.N[a.J[d]],f+=Math.sqrt(b*b+c*c);0<a.v?(f/=a.v,e=25*a.o.C/f):1<a.u&&(e=75*a.o.C/Math.sqrt((a.K[1]-a.K[2])*(a.K[1]-a.K[2])+(a.N[1]-a.N[2])*(a.N[1]-a.N[2])));for(d=1;d<=a.u;++d)a.K[d]*=e,a.N[d]*=e}
472
- function KE(a,b,c){var d,e,f,g,j;if(0==c.indexOf(Qc)&&CG(c,Tc))c=c.substr(1,c.length-1-1),a.c[b]=18,a.p[b]=c,a.y[b]=0;else{f=!1;-1<c.indexOf(ya)&&(f=!0);-1<c.indexOf(pb)&&(f=!0);-1<c.indexOf(ma)&&(f=!0);-1<c.indexOf("!")&&(f=!0);d=c.indexOf(mb);e=c.indexOf(Xb);g=Xj(c.indexOf(xa),c.indexOf(Ba));if(-1<d){j=qo(c,d+1);try{a.o.z=FC(j,10)}catch(h){if(h=Si(h),A(h,123))a.o.z=0;else throw h;}a.E=b;UE(a);c=c.substr(0,d-0);a.E=0}if(f)a.p[b]=c,a.c[b]=18,a.y[b]=0;else{d=c;0<e?d=c.substr(0,e-0):0<g&&(d=c.substr(0,
473
- g-0));a.c[b]=G(d,Hb)?3:G(d,Db)?2:G(d,hc)?4:G(d,oc)?5:G(d,qc)?7:G(d,Cc)?8:G(d,Tb)?9:G(d,Nb)?10:G(d,Gb)?11:G(d,Zb)?12:G(d,Xb)?1:G(d,Ec)?13:G(d,Fc)?6:G(d,rc)?19:G(d,tc)?20:G(d,uc)?21:G(d,vc)?22:18;18==a.c[b]&&(a.p[b]=d);c+=ba;d=0;0<e&&(d=1,e=mG(c,++e),48<=e&&57>=e&&(d=e-48));18==a.c[b]&&(a.y[b]=d);d=0;if(0<g&&(e=mG(c,g++),43==e?d=1:45==e&&(d=-1),0!=d&&(e=mG(c,g++),!(48<=e&&57>=e)))){for(;43==e;)++d,e=mG(c,g++);for(;45==e;)--d,e=mG(c,g++)}a.B[b]=d}}}
474
- function sE(a,b,c){var d,e;a.k=1;c&&(a.k=-1);b=new aD(b);try{for(;b.k=UC(b,b.b),b.k<b.j;)d=qE(FC(XC(b),10)).b,c=e=qE(FC(XC(b),10)).b,(0>c||6<c)&&(c=0),a.e[d]=c}catch(f){if(f=Si(f),A(f,123))un(f);else throw f;}}function DH(a,b,c,d,e){b=oH(a,b,c);5!=a.i[b]&&vH(a,b)?d.b.b+=rb:3==a.t[b]?d.b.b+=ma:9==a.t[b]?(e=vb,a=a.f[b],null!=a&&(e=a),xn(d.b,e)):1==e[b]?d.b.b+=Ya:-1==e[b]&&(d.b.b+=Sc)}
475
- function VE(a,b){var c,d;if(1==a.t[b])if(c=a.I[b],d=a.J[b],2>a.A[c]&&2>a.A[d])a.C[b]=0,er(a.o,"Stereomarking meaningless on this bond !");else switch(a.C[b]){case 0:a.A[d]<=a.A[c]?a.C[b]=1:a.C[b]=3;break;case 1:a.C[b]=2;break;case 2:2<a.A[d]?a.C[b]=3:a.C[b]=1;break;case 3:a.C[b]=4;break;case 4:2<a.A[c]?a.C[b]=1:a.C[b]=3}else 2==a.t[b]?10==a.C[b]?a.C[b]=0:a.C[b]=10:er(a.o,"Stereomarking allowed only on single and double bonds!")}
476
- function BH(a,b,c,d,e){var f,g,j,h,n,o,q,r,u;if(!(2!=a.t[b]||5==a.i[b])&&(10==a.C[b]||a.o.q&&!e[b]))if(e=a.I[b],f=a.J[b],!(2>a.A[e]||2>a.A[f]||3<a.A[e]||3<a.A[f])){c[e]>c[f]&&(g=e,e=f,f=g);q=o=b=0;r=!1;for(n=1;n<=a.A[e];++n)g=a.H[e][n],g!=f&&(0==o?o=g:q=g);0<q&&c[o]>c[q]&&(g=o,o=q,q=g);h=oH(a,e,o);0!=d[h]?b=o:1==a.t[h]&&5!=a.i[h]&&(b=o);0==b&&(h=oH(a,e,q),0!=d[h]?b=q:1==a.t[h]&&5!=a.i[h]&&(b=q));c[b]>c[e]&&(r=!0);j=q=o=0;for(n=1;n<=a.A[f];++n)g=a.H[f][n],g!=e&&(0==q?q=g:j=g);0<j&&c[q]<c[j]&&(g=q,
477
- q=j,j=g);h=oH(a,f,q);1==a.t[h]&&5!=a.i[h]&&0==d[h]&&(o=q);0==o&&(h=oH(a,f,j),1==a.t[h]&&5!=a.i[h]&&(o=j));if(!(0==b||0==o))if(h=a.K[f]-a.K[e],g=a.N[f]-a.N[e],n=Math.sqrt(h*h+g*g),0.001>n&&(n=0.001),g/=n,h/=n,q=(a.N[b]-a.N[e])*h-(a.K[b]-a.K[e])*g,u=(a.N[o]-a.N[e])*h-(a.K[o]-a.K[e])*g,2>(0>=q?0-q:q)||2>(0>=u?0-u:u))er(a.o,"Not unique E/Z geometry !");else{j=oH(a,b,e);f=oH(a,o,f);o=1;if(0==d[j]){for(n=1;n<=a.A[b];++n)if(g=a.H[b][n],g!=e&&(h=oH(a,b,g),0!=d[h])){c[g]>c[b]?o=-d[h]:o=d[h];break}d[j]=o}0==
478
- d[f]&&(0<q&&0<u||0>q&&0>u?d[f]=-d[j]:d[f]=d[j],r&&(d[f]=-d[f]))}}}function tH(a,b){var c,d,e;e=0;for(d=1;d<=a.A[b];++d)if(c=oH(a,b,a.H[b][d]),1==a.t[c])e+=1;else if(vH(a,c))e+=2;else if(3==a.t[c])e+=3;else if(9==a.t[c])return-1;return e}function CH(a,b,c){var d;d=a.C[b];return 1>d||4<d?0:1==d&&a.I[b]==c?1:2==d&&a.I[b]==c?-1:3==d&&a.J[b]==c?1:4==d&&a.J[b]==c?-1:0}
479
- function JE(a){var b;for(b=1;b<=a.u;++b){var c=a,d=b,e=void 0,e=tH(c,d);if(-1==e)c.y[d]=0;else{switch(c.c[d]){case 1:2==e?c.B[d]=1:c.B[d]=0;c.y[d]=0;break;case 2:3==e||5==e?(c.y[d]=0,c.B[d]=0):3>e?c.y[d]=3-e-c.B[d]:4==e?(c.B[d]=-1,c.y[d]=0):5<e&&(c.B[d]=e-5,c.y[d]=0);break;case 3:case 6:4>e?0<c.B[d]?c.y[d]=2-e+c.B[d]:0>c.B[d]?c.y[d]=2-e-c.B[d]:c.y[d]=4-e:(c.B[d]=e-4,c.y[d]=4-e+c.B[d]);break;case 4:case 7:3>e?c.y[d]=3-e+c.B[d]:3==e?0>c.B[d]?(c.B[d]=0,c.y[d]=0):0<c.B[d]?c.y[d]=c.B[d]:c.y[d]=0:(c.B[d]=
480
- 4==e?1:6==e?-1:e-5,c.y[d]=0);break;case 5:2==e&&(0>c.B[d]?(c.B[d]=0,c.y[d]=0):0<c.B[d]?c.y[d]=c.B[d]:c.y[d]=0);2<e&&(c.B[d]=e-2);c.y[d]=2-e+c.B[d];break;case 8:case 13:2>e?c.y[d]=2-e+c.B[d]:2==e?0>c.B[d]?(c.B[d]=0,c.y[d]=0):0<c.B[d]?c.y[d]=c.B[d]:c.y[d]=0:3==e?2==c.A[d]?(c.B[d]=0,c.y[d]=1):(c.B[d]=1,c.y[d]=0):4==e?(c.B[d]=0,c.y[d]=0):5==e?(c.B[d]=0,c.y[d]=1):(c.B[d]=e-6,c.y[d]=0);break;case 9:case 10:case 11:case 12:1<=e&&(c.B[d]=e-1);c.y[d]=1-e+c.B[d];2<e&&(c.B[d]=0,c.y[d]=0);break;case 19:case 18:c.y[d]=
481
- 0}0>c.y[d]&&(c.y[d]=0)}}}function MD(a){lH(this);this.o=a;this.z=this.v=this.u=0}
482
- function rE(a,b){var c,d,e,f,g,j,h;MD.call(this,a);f=l;j=oE(b);if(null!=j){h=new $C(b,j,!0);for(e=1;4>=e;++e)f=pE(h,j);g=qE(FC(io(f.substr(0,3)),10)).b;c=qE(FC(io(f.substr(3,3)),10)).b;for(e=1;e<=g;++e)WE(this),f=pE(h,j),this.K[e]=(new zG(wG(io(f.substr(0,10))))).b,this.N[e]=-(new zG(wG(io(f.substr(10,10))))).b,d=34,34>f.length&&(d=f.length),d=io(f.substr(31,d-31)),KE(this,e,d),62<=f.length&&(f=io(f.substr(60,3)),0<f.length&&(f=qE(FC(f,10)).b,0<f&&(this.E=e,a.z=f,UE(this),this.E=0)));for(e=1;e<=c;++e)cF(this),
483
- f=pE(h,j),this.I[e]=qE(FC(io(f.substr(0,3)),10)).b,this.J[e]=qE(FC(io(f.substr(3,3)),10)).b,g=qE(FC(io(f.substr(6,3)),10)).b,1==g?this.t[e]=1:2==g?this.t[e]=2:3==g?this.t[e]=3:this.t[e]=9,d=0,11<f.length&&(d=qE(FC(io(f.substr(9,3)),10)).b),1==g&&1==d&&(this.t[e]=1,this.C[e]=1),1==g&&6==d&&(this.t[e]=1,this.C[e]=2);uH(this);gF(this);JD(this);for(GE(this);(h.k=UC(h,h.b),h.k<h.j)&&!(null==(f=XC(h)));){if(0==f.indexOf("M END"))break;if(0==f.indexOf("M CHG")){g=new ZC(f);XC(g);XC(g);j=qE(FC(XC(g),10)).b;
484
- for(e=1;e<=j;++e)c=qE(FC(XC(g),10)).b,this.B[c]=qE(FC(XC(g),10)).b}if(0==f.indexOf("M APO")){g=new ZC(f);XC(g);XC(g);j=qE(FC(XC(g),10)).b;for(e=1;e<=j;++e)c=qE(FC(XC(g),10)).b,f=qE(FC(XC(g),10)).b,this.E=c,Z(this,0),KE(this,this.u,rc+f),this.E=0}}xH(this);GE(this)}}
485
- function nF(a,b){var c,d,e,f,g;MD.call(this,a);0==b.indexOf(ea)&&(b=b.substr(1,b.length-1));CG(b,ea)&&(b=b.substr(0,b.length-1-0));if(1>b.length)this.u=0;else{try{f=new ZC(b);d=qE(FC(XC(f),10)).b;e=qE(FC(XC(f),10)).b;for(c=1;c<=d;++c)g=XC(f),WE(this),KE(this,this.u,g),this.K[c]=(new zG(wG(XC(f)))).b,this.N[c]=-(new zG(wG(XC(f)))).b;for(c=1;c<=e;++c)if(cF(this),this.I[c]=qE(FC(XC(f),10)).b,this.J[c]=qE(FC(XC(f),10)).b,this.t[c]=qE(FC(XC(f),10)).b,-1==this.t[c])this.t[c]=1,this.C[c]=1;else if(-2==this.t[c])this.t[c]=
486
- 1,this.C[c]=2;else if(-5==this.t[c])this.t[c]=2,this.C[c]=10;else if(11==this.t[c]||12==this.t[c]||13==this.t[c]||14==this.t[c])this.C[c]=this.t[c],this.t[c]=9;uH(this);gF(this);JD(this)}catch(j){j=Si(j);if(A(j,123)){j.Ic();this.u=0;return}throw j;}xH(this);GE(this)}}
487
- function uE(a,b,c){var d,e,f;MD.call(this,a);f=y(I,m,-1,b.u+1,1);for(a=1;a<=b.u;++a)b.b[a]==c&&(WE(this),this.c[this.u]=b.c[a],this.K[this.u]=b.K[a],this.N[this.u]=b.N[a],this.B[this.u]=b.B[a],this.y[this.u]=b.y[a],this.e[this.u]=b.e[a],this.d[this.u]=b.d[a],this.p[this.u]=b.p[a],f[a]=this.u);for(a=1;a<=b.v;++a)if(d=b.I[a],e=b.J[a],!(b.b[d]!=c&&b.b[e]!=c)&&!(b.b[d]!=c||b.b[e]!=c))cF(this),this.t[this.v]=b.t[a],this.C[this.v]=b.C[a],this.I[this.v]=f[d],this.J[this.v]=f[e],this.f[this.v]=b.f[a];for(a=
488
- 1;a<=b.z;++a)d=b.r[a][0],d==c&&(++this.z,this.r[this.z][0]=f[d],this.r[this.z][1]=b.r[a][1]);this.k=b.k;GE(this);JD(this)}
489
- function NE(a,b,c){var d,e,f,g,j;MD.call(this,a);for(a=1;a<=c;++a)this.u+=b[a].u,this.v+=b[a].v,this.z+=b[a].z;this.c=y(I,m,-1,this.u+1,1);this.B=y(I,m,-1,this.u+1,1);this.y=y(I,m,-1,this.u+1,1);this.e=y(I,m,-1,this.u+1,1);this.d=y(Os,s,1,this.u+1,0);this.K=y(HD,s,-1,this.u+1,1);this.N=y(HD,s,-1,this.u+1,1);this.p=y(Os,s,1,this.u+1,0);this.I=y(I,m,-1,this.v+1,1);this.J=y(I,m,-1,this.v+1,1);this.t=y(I,m,-1,this.v+1,1);this.f=y(Os,s,1,this.v+1,0);this.C=y(I,m,-1,this.v+1,1);this.r=Ds([this.z+1,2]);
490
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503
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506
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