labimotion 2.4.0.rc1 → 2.4.0.rc2

data/lib/labimotion/models/cellline.rb

@@ -0,0 +1,47 @@
+# frozen_string_literal: true
+
+# This file extends the existing CelllineSample model in the consuming app
+# and defines a Labimotion::CellLine wrapper for convenient access.
+# NB: the ELN host model is ::CelllineSample, but the wrapper is named
+# Labimotion::CellLine so that "cell_line".camelize == "CellLine" resolves
+# to it in the search_basic_by_like endpoint.
+
+# rubocop:disable Style/RedundantConstantBase
+
+ActiveSupport.on_load(:active_record) do
+  if defined?(::CelllineSample)
+    ::CelllineSample.class_eval do
+      include Labimotion::ElementFetchable
+
+      def self.element_klass_name
+        'cell_line'
+      end
+    end
+  else
+    warn '[Labimotion] CelllineSample is not defined when Labimotion extension was loaded.'
+  end
+end
+
+# Namespace wrapper to keep your preferred call style
+module Labimotion
+  module CellLine
+    class << self
+      # Delegate class methods to ::CelllineSample.
+      # ruby2_keywords is required so keyword arguments survive the *args
+      # round-trip on Ruby >= 3.0 (e.g. fetch_for_user(id, name:, limit:)).
+      ruby2_keywords def method_missing(method, *args, &block)
+        if ::CelllineSample.respond_to?(method)
+          ::CelllineSample.public_send(method, *args, &block)
+        else
+          super
+        end
+      end
+
+      def respond_to_missing?(method, include_private = false)
+        ::CelllineSample.respond_to?(method, include_private) || super
+      end
+    end
+  end
+end
+
+# rubocop:enable Style/RedundantConstantBase

data/lib/labimotion/models/concerns/element_fetchable.rb

@@ -26,9 +26,10 @@ module Labimotion
           joins(collections: :user).where(collections: { user_id: user_id })
         )
 
-        # Shared records
+        # Shared records — collection_shares hangs off Collection, not off the
+        # element models themselves, so join through the collections association.
         shared = apply_filters.call(
-          left_joins(:collection_shares).where(collection_shares: { shared_with_id: user_id })
+          left_joins(collections: :collection_shares).where(collection_shares: { shared_with_id: user_id })
         )
 
         # Combine (remove duplicates), order, and limit

data/lib/labimotion/models/concerns/segmentable.rb

@@ -96,6 +96,8 @@ module Labimotion
     end
 
     def touch_analyses_properties(current_user)
+      return unless respond_to?(:analyses)
+
       analyses.each do |analysis|
         analysis.children.each do |child|
           dataset = child.dataset

data/lib/labimotion/models/element.rb

@@ -141,9 +141,10 @@ module Labimotion
         joins(collections: :user).where(collections: { user_id: user_id })
       )
 
-      # Shared elements
+      # Shared elements — collection_shares hangs off Collection, not off
+      # Element itself, so join through the collections association.
       shared = apply_filters.call(
-        left_joins(:collection_shares).where(collection_shares: { shared_with_id: user_id })
+        left_joins(collections: :collection_shares).where(collection_shares: { shared_with_id: user_id })
       )
 
       # Combine (remove duplicates), order, and limit

data/lib/labimotion/models/user_klass_setting.rb

@@ -0,0 +1,12 @@
+# frozen_string_literal: true
+
+module Labimotion
+  # Per-user, per-klass UI settings (e.g. toolbar Overview/Arrange visibility).
+  # Scoped to the owning user via created_by; at most one row per
+  # (created_by, klass, klass_identifier) — see the unique index. Keyed on the
+  # stable klass identifier so it applies to every instance of that klass,
+  # across template versions.
+  class UserKlassSetting < ApplicationRecord
+    self.table_name = :user_klass_settings
+  end
+end

data/lib/labimotion/version.rb

@@ -2,5 +2,5 @@
 
 ## Labimotion Version
 module Labimotion
-  VERSION = '2.4.0.rc1'
+  VERSION = '2.4.0.rc2'
 end

data/lib/labimotion.rb

@@ -28,6 +28,7 @@ module Labimotion
   autoload :StandardLayerAPI, 'labimotion/apis/standard_layer_api'
   autoload :VocabularyAPI, 'labimotion/apis/vocabulary_api'
   autoload :UserAPI, 'labimotion/apis/user_api'
+  autoload :UserKlassSettingsAPI, 'labimotion/apis/user_klass_settings_api'
   autoload :MttAPI, 'labimotion/apis/mtt_api'
   autoload :ElementVariationAPI, 'labimotion/apis/element_variation_api'
   autoload :LabimotionDoiAPI, 'labimotion/apis/labimotion_doi_api'
@@ -56,6 +57,7 @@ module Labimotion
   ## autoload :DatasetRevisionEntity, 'labimotion/entities/dataset_revision_entity'
   autoload :VocabularyEntity, 'labimotion/entities/vocabulary_entity'
   autoload :UserEntity, 'labimotion/entities/user_entity'
+  autoload :UserKlassSettingEntity, 'labimotion/entities/user_klass_setting_entity'
   autoload :ElementVariationEntity, 'labimotion/entities/element_variation_entity'
   autoload :LabimotionTemplateDoiEntity, 'labimotion/entities/labimotion_template_doi_entity'
 
@@ -93,6 +95,10 @@ module Labimotion
   autoload :AttachmentHandler, 'labimotion/libs/attachment_handler'
   autoload :VocabularyHandler, 'labimotion/libs/vocabulary_handler'
   autoload :XlsxExporter, 'labimotion/libs/xlsx_exporter'
+  autoload :ElementVariationColumnSet, 'labimotion/libs/element_variation_column_set'
+  autoload :ElementVariationHeader, 'labimotion/libs/element_variation_header'
+  autoload :ExportElementVariations, 'labimotion/libs/export_element_variations'
+  autoload :ImportElementVariations, 'labimotion/libs/import_element_variations'
 
   ######## Utils
   autoload :Prop, 'labimotion/utils/prop'
@@ -130,7 +136,9 @@ module Labimotion
 
   autoload :StdLayer, 'labimotion/models/std_layer'
   autoload :StdLayersRevision, 'labimotion/models/std_layers_revision'
+  autoload :UserKlassSetting, 'labimotion/models/user_klass_setting'
 
+  autoload :CellLine, 'labimotion/models/cellline'
   autoload :DeviceDescription, 'labimotion/models/device_description'
   autoload :DoseRespRequest, 'labimotion/models/dose_resp_request'
   autoload :DoseRespOutput, 'labimotion/models/dose_resp_output'

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: labimotion
 version: !ruby/object:Gem::Version
-  version: 2.4.0.rc1
+  version: 2.4.0.rc2
 platform: ruby
 authors:
 - Chia-Lin Lin
@@ -9,7 +9,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2026-07-03 00:00:00.000000000 Z
+date: 2026-07-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: caxlsx
@@ -45,6 +45,20 @@ dependencies:
     - - "<"
       - !ruby/object:Gem::Version
         version: '8.0'
+- !ruby/object:Gem::Dependency
+  name: roo
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.10'
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: '2.10'
 description: 
 email:
 - chia-lin.lin@kit.edu
@@ -72,6 +86,7 @@ files:
 - lib/labimotion/apis/standard_api.rb
 - lib/labimotion/apis/standard_layer_api.rb
 - lib/labimotion/apis/user_api.rb
+- lib/labimotion/apis/user_klass_settings_api.rb
 - lib/labimotion/apis/vocabulary_api.rb
 - lib/labimotion/apis/wellplate_api.rb
 - lib/labimotion/collection/export.rb
@@ -96,6 +111,7 @@ files:
 - lib/labimotion/entities/segment_klass_entity.rb
 - lib/labimotion/entities/segment_revision_entity.rb
 - lib/labimotion/entities/user_entity.rb
+- lib/labimotion/entities/user_klass_setting_entity.rb
 - lib/labimotion/entities/vocabulary_entity.rb
 - lib/labimotion/helpers/converter_helpers.rb
 - lib/labimotion/helpers/dataset_helpers.rb
@@ -116,8 +132,12 @@ files:
 - lib/labimotion/libs/data/vocab/Standard.json
 - lib/labimotion/libs/data/vocab/System.json
 - lib/labimotion/libs/dataset_builder.rb
+- lib/labimotion/libs/element_variation_column_set.rb
+- lib/labimotion/libs/element_variation_header.rb
 - lib/labimotion/libs/export_dataset.rb
 - lib/labimotion/libs/export_element.rb
+- lib/labimotion/libs/export_element_variations.rb
+- lib/labimotion/libs/import_element_variations.rb
 - lib/labimotion/libs/linked_element.rb
 - lib/labimotion/libs/nmr_mapper.rb
 - lib/labimotion/libs/properties_handler.rb
@@ -126,6 +146,7 @@ files:
 - lib/labimotion/libs/template_matcher.rb
 - lib/labimotion/libs/vocabulary_handler.rb
 - lib/labimotion/libs/xlsx_exporter.rb
+- lib/labimotion/models/cellline.rb
 - lib/labimotion/models/collections_element.rb
 - lib/labimotion/models/concerns/attachment_converter.rb
 - lib/labimotion/models/concerns/datasetable.rb
@@ -165,6 +186,7 @@ files:
 - lib/labimotion/models/std_layer.rb
 - lib/labimotion/models/std_layers_revision.rb
 - lib/labimotion/models/template_submission.rb
+- lib/labimotion/models/user_klass_setting.rb
 - lib/labimotion/models/vocabulary.rb
 - lib/labimotion/models/wellplate.rb
 - lib/labimotion/usecases/build_template_doi_xml.rb