labimotion 2.2.0.rc18 → 2.3.0.rc3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/labimotion/apis/converter_api.rb +98 -23
- data/lib/labimotion/utils/units.rb +177 -20
- data/lib/labimotion/version.rb +1 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: b0961f712ff20e446cf716475b209f77990f76aceb5c96865fe0c499346e8e9c
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data.tar.gz: f2e699a236095280fed0a264da3ec973e189a1e97721a641132e107bab030b3d
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 65b886fcb89fc1eec184337c0ab4779b40a3cac97f2f3c801ff6d8479d1dd80195c738fe0a07241edb1cc3cae50061920c52c7e43f8f07036887f69bf117e58a
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data.tar.gz: aa4a29222063fa59aeb2e2f9c06e1d64c481c58b9e4c9ff33d334718531225ca091986d573e3caec03ac42022240a170224d1af4f7619475edbc0b6ad65246bb
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@@ -2,39 +2,103 @@
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module Labimotion
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class ConverterAPI < Grape::API
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helpers Labimotion::DatasetHelpers
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helpers do
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def load_converter_config!
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@conf = Rails.configuration.converter&.url
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@profile = Rails.configuration.converter&.profile
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error!(406) unless @conf && @profile
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end
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def require_converter_admin!
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error!(401) unless current_user.profile&.data&.fetch('converter_admin', false)
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end
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def uploaded_file
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params[:file].is_a?(Array) ? params[:file][0] : params[:file]
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end
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end
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resource :converter do
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resource :datasets do
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desc 'list Generic Dataset Klass'
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get do
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list = klass_list(true, false)
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list.map do |kl|
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pr = kl.properties_release
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pr['name'] = kl.label
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pr['ols'] = kl.ols_term_id
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pr
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end || []
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end
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end
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resource :datasets_units do
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desc 'list Generic Dataset Klass'
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get do
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Labimotion::Units::FIELDS
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end
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end
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resource :profiles do
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before do
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@profile = Rails.configuration.try(:converter).try(:profile)
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error!(406) unless @conf && @profile
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load_converter_config!
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end
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-
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desc 'Fetch profiles (no admin required)'
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get do
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profiles = Labimotion::Converter.fetch_profiles
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{ profiles: profiles, client: @profile }
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end
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-
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desc 'Create profile'
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post do
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require_converter_admin!
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Labimotion::Converter.create_profile(params)
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end
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-
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route_param :id do
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desc 'Update profile'
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put do
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require_converter_admin!
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Labimotion::Converter.update_profile(params)
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end
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route_param :id do
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desc 'Delete profile'
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delete do
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Labimotion::Converter.delete_profile(id)
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require_converter_admin!
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Labimotion::Converter.delete_profile(params[:id])
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end
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end
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end
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resource :restore do
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route_param :profile_id,
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requirements: {
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profile_id: /[0-9a-fA-F]{8}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{4}-[0-9a-fA-F]{12}/
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} do
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route_param :profile_version,
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requirements: {
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profile_version: /\d+\.\d+/
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} do
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get do
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{test_version: params[:profile_id], version: params[:profile_version]}
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end
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desc 'Restore profile'
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post do
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require_converter_admin!
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Labimotion::Converter.restore(
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params[:profile_id],
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params[:profile_version],
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params[:hard]
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)
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end
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end
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end
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end
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end
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resource :structure do
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helpers do
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def convert_structure(molfile)
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@@ -66,10 +130,8 @@ module Labimotion
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resource :options do
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before do
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@profile = Rails.configuration.try(:converter).try(:profile)
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error!(406) unless @conf && @profile
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load_converter_config!
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require_converter_admin!
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end
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desc 'fetch options'
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get do
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@@ -80,18 +142,31 @@ module Labimotion
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resource :tables do
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before do
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@profile = Rails.configuration.try(:converter).try(:profile)
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error!(406) unless @conf && @profile
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load_converter_config!
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require_converter_admin!
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end
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desc 'create tables'
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post do
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res
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file = uploaded_file
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res = Labimotion::Converter.create_tables(file['tempfile']) unless file.nil?
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res['metadata']['file_name'] = file['filename']
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res
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end
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end
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resource :conversions do
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before do
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load_converter_config!
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require_converter_admin!
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end
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desc 'convert file'
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post do
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file = uploaded_file
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res = Labimotion::Converter.test_conversions(file['tempfile'], params[:format]) unless file.nil?
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res
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end
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end
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end
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end
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end
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end
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@@ -51,6 +51,20 @@ module Labimotion
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{ "key": "pmol", "label": "pmol", "nm": 1.0e12 }
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]
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},
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{
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"type": "numeric",
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"field": "areal_density",
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"label": "Areal density",
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"default": "",
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"position": 38,
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"placeholder": "areal density",
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"units": [
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{ "key": "kg_m2", "label": "kg m<sup>-2</sup>", "nm": 1 },
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{ "key": "t_m2", "label": "t m<sup>-2</sup>", "nm": 0.001 },
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{ "key": "kg_cm2", "label": "kg cm<sup>-2</sup>", "nm": 1e-4 },
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{ "key": "g_m2", "label": "g m<sup>-2</sup>", "nm": 1000 }
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]
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},
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{
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"type": "numeric",
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"field": "molarity",
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"field": "conductivity",
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"label": "Conductivity",
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"default": "",
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"position":
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"position": 62,
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"placeholder": "conductivity",
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"units": [
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"units": [
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{ "key": "s_m", "label": "S/m", "nm": 1 },
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{ "key": "ms_cm", "label": "mS/cm", "nm": 10 }
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]
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},
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{
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"type": "numeric",
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"field": "currency",
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"label": "Currency",
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"default": "",
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"position": 64,
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"placeholder": "Currency",
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"units": [
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{ "key": "eur", "label": "EUR", "nm": 1, "unit_type": "eur" },
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{ "key": "chf", "label": "CHF", "nm": 1, "unit_type": "chf" },
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{ "key": "gbp", "label": "GBP", "nm": 1, "unit_type": "gbp" },
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{ "key": "usd", "label": "USD", "nm": 1, "unit_type": "usd" },
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{ "key": "jpy", "label": "JPY", "nm": 1, "unit_type": "jpy" }
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]
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},
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{
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"type": "numeric",
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"field": "current",
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"label": "Current",
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"default": "",
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"position":
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"position": 67,
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"placeholder": "Current",
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"units": [
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{ "key": "A", "label": "A", "nm": 1 },
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{ "key": "k_j", "label": "kJ", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "free_energy",
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"label": "Free Energy/enthalpy",
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"default": "",
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"position": 89,
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"placeholder": "Free Energy/enthalpy",
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"units": [
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{ "key": "kj_mol", "label": "kJ/mol", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "enzyme_activity",
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"placeholder": "Enzyme activity",
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"units": [
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{ "key": "u_l", "label": "U/L", "nm": 1 },
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{ "key": "u_ml", "label": "U/mL", "nm":
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{ "key": "u_g", "label": "U/g", "nm":
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{ "key": "u_mg", "label": "U/mg", "nm":
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{ "key": "u_ml", "label": "U/mL", "nm": 1e-3 },
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{ "key": "u_g", "label": "U/g", "nm": 1e-3 },
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{ "key": "u_mg", "label": "U/mg", "nm": 1e-6 }
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]
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},
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{
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"position": 100,
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"placeholder": "Flow rate",
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"units": [
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{ "key": "
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{ "key": "ml_min", "label": "
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{ "key": "
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{ "key": "l_m", "label": "L/min", "nm": 1 },
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{ "key": "ml_min", "label": "mL/min", "nm": 1000 },
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{ "key": "ul_min", "label": "µL/min", "nm": 1000000 },
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{ "key": "ml_h", "label": "mL/h", "nm": 60000 }
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]
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},
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"position": 103,
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"placeholder": "frequency",
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"units": [
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{ "key": "
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{ "key": "
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{ "key": "
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{ "key": "hz", "label": "Hz", "nm": 1 },
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{ "key": "khz", "label": "kHz", "nm": 1e-3 },
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{ "key": "mhz", "label": "MHz", "nm": 1e-6 }
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]
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},
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{
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"type": "numeric",
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"field": "heating_rate",
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"label": "Heating rate",
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"label": "Heating rate (Temperature ramp)",
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"default": "",
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"position": 106,
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"placeholder": "heating rate",
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"units": [
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"units": [
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{ "key": "k_min", "label": "K/min", "nm": 1 },
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{ "key": "k_s", "label": "K/s", "nm": 0.016666666666667 },
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{ "key": "k_h", "label": "K/h", "nm": 60 },
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{ "key": "degc_min", "label": "°C min<sup>-1</sup>", "nm": 1 },
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{ "key": "degc_s", "label": "°C s<sup>-1</sup>", "nm": 0.016666666666667 },
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{ "key": "degc_h", "label": "°C h<sup>-1</sup>", "nm": 60 }
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]
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},
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{
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"type": "numeric",
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@@ -346,6 +397,29 @@ module Labimotion
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{ "key": "ug", "label": "µg", "nm": 1000000 }
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]
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},
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{
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"type": "numeric",
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"field": "mass_fraction",
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"label": "Mass fraction",
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"default": "",
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"position": 123,
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|
+
"placeholder": "mass fraction",
|
|
407
|
+
"units": [
|
|
408
|
+
{ "key": "wt_p", "label": "wt.%", "nm": 1 }
|
|
409
|
+
]
|
|
410
|
+
},
|
|
411
|
+
{
|
|
412
|
+
"type": "numeric",
|
|
413
|
+
"field": "mass_loading",
|
|
414
|
+
"label": "Mass loading",
|
|
415
|
+
"default": "",
|
|
416
|
+
"position": 125,
|
|
417
|
+
"placeholder": "mass loading",
|
|
418
|
+
"units": [
|
|
419
|
+
{ "key": "g_cm2", "label": "g cm<sup>-2</sup>", "nm": 1 },
|
|
420
|
+
{ "key": "mg_cm2", "label": "mg cm<sup>-2</sup>", "nm": 1000 }
|
|
421
|
+
]
|
|
422
|
+
},
|
|
349
423
|
{
|
|
350
424
|
"type": "numeric",
|
|
351
425
|
"field": "mass_molecule",
|
|
@@ -358,6 +432,28 @@ module Labimotion
|
|
|
358
432
|
{ "key": "kilo_dalton", "label": "kD", "nm": 1 }
|
|
359
433
|
]
|
|
360
434
|
},
|
|
435
|
+
{
|
|
436
|
+
"type": "numeric",
|
|
437
|
+
"field": "molar_conductivity",
|
|
438
|
+
"label": "Molar conductivity",
|
|
439
|
+
"default": "",
|
|
440
|
+
"position": 127,
|
|
441
|
+
"placeholder": "molar conductivity",
|
|
442
|
+
"units": [
|
|
443
|
+
{ "key": "s_cm2_mol", "label": "S cm<sup>2</sup> mol<sup>-1</sup>", "nm": 1 }
|
|
444
|
+
]
|
|
445
|
+
},
|
|
446
|
+
{
|
|
447
|
+
"type": "numeric",
|
|
448
|
+
"field": "molar_entropy",
|
|
449
|
+
"label": "Molar Entropy",
|
|
450
|
+
"default": "",
|
|
451
|
+
"position": 128,
|
|
452
|
+
"placeholder": "Molar Entropy",
|
|
453
|
+
"units": [
|
|
454
|
+
{ "key": "j_mol_k", "label": "J/(mol*K)", "nm": 1 }
|
|
455
|
+
]
|
|
456
|
+
},
|
|
361
457
|
{
|
|
362
458
|
"type": "numeric",
|
|
363
459
|
"field": "molecular_weight",
|
|
@@ -402,6 +498,30 @@ module Labimotion
|
|
|
402
498
|
{ "key": "mbar", "label": "mbar", "nm": 1013.25 }
|
|
403
499
|
]
|
|
404
500
|
},
|
|
501
|
+
{
|
|
502
|
+
"type": "numeric",
|
|
503
|
+
"field": "process_rate",
|
|
504
|
+
"label": "Process rate",
|
|
505
|
+
"default": "",
|
|
506
|
+
"position": 143,
|
|
507
|
+
"placeholder": "Process rate",
|
|
508
|
+
"units": [
|
|
509
|
+
{ "key": "1_s", "label": "1/s", "nm": 1 },
|
|
510
|
+
{ "key": "1_min", "label": "1/min", "nm": 60 },
|
|
511
|
+
{ "key": "1_h", "label": "1/h", "nm": 3600 }
|
|
512
|
+
]
|
|
513
|
+
},
|
|
514
|
+
{
|
|
515
|
+
"type": "numeric",
|
|
516
|
+
"field": "rate_constant",
|
|
517
|
+
"label": "Rate constant",
|
|
518
|
+
"default": "",
|
|
519
|
+
"position": 146,
|
|
520
|
+
"placeholder": "Rate constant",
|
|
521
|
+
"units": [
|
|
522
|
+
{ "key": "1_m_s", "label": "1/(M*s)", "nm": 1 }
|
|
523
|
+
]
|
|
524
|
+
},
|
|
405
525
|
{
|
|
406
526
|
"type": "numeric",
|
|
407
527
|
"field": "reaction_rate",
|
|
@@ -410,8 +530,8 @@ module Labimotion
|
|
|
410
530
|
"position": 150,
|
|
411
531
|
"placeholder": "Reaction rate",
|
|
412
532
|
"units": [
|
|
413
|
-
{ "key": "mol_lmin", "label": "mol
|
|
414
|
-
{ "key": "mol_lsec", "label": "mol
|
|
533
|
+
{ "key": "mol_lmin", "label": "mol L<sup>-1</sup> min<sup>-1</sup>", "nm": 1 },
|
|
534
|
+
{ "key": "mol_lsec", "label": "mol L<sup>-1</sup> s<sup>-1</sup>", "nm": 0.016666666666667 }
|
|
415
535
|
]
|
|
416
536
|
},
|
|
417
537
|
{
|
|
@@ -448,8 +568,9 @@ module Labimotion
|
|
|
448
568
|
"units": [
|
|
449
569
|
{ "key": "ma_g", "label": "mA/g", "nm": 1000, "unit_type": "mass" },
|
|
450
570
|
{ "key": "a_g", "label": "A/g", "nm": 1, "unit_type": "mass" },
|
|
571
|
+
{ "key": "ma_cm2", "label": "mA/cm<sup>2</sup>", "nm": 1000, "unit_type": "area" },
|
|
451
572
|
{ "key": "a_cm2", "label": "A/cm<sup>2</sup>", "nm": 1, "unit_type": "area" },
|
|
452
|
-
{ "key": "
|
|
573
|
+
{ "key": "a_mm2", "label": "A/mm<sup>2</sup>", "nm": 0.01, "unit_type": "area" }
|
|
453
574
|
]
|
|
454
575
|
},
|
|
455
576
|
{
|
|
@@ -495,7 +616,7 @@ module Labimotion
|
|
|
495
616
|
{ "key": "cm_s", "label": "cm/s", "nm": 1 },
|
|
496
617
|
{ "key": "mm_s", "label": "mm/s", "nm": 10 },
|
|
497
618
|
{ "key": "um_m", "label": "µm/min", "nm": 600000 },
|
|
498
|
-
{ "key": "nm_m", "label": "nm/min", "nm":
|
|
619
|
+
{ "key": "nm_m", "label": "nm/min", "nm": 600000000 },
|
|
499
620
|
{ "key": "cm_h", "label": "cm/h", "nm": 3600 },
|
|
500
621
|
{ "key": "mm_h", "label": "mm/h", "nm": 36000 }
|
|
501
622
|
]
|
|
@@ -540,6 +661,31 @@ module Labimotion
|
|
|
540
661
|
{ "key": "K", "label": "K" }
|
|
541
662
|
]
|
|
542
663
|
},
|
|
664
|
+
{
|
|
665
|
+
"type": "numeric",
|
|
666
|
+
"field": "tensile_force",
|
|
667
|
+
"label": "Tensile force",
|
|
668
|
+
"default": "",
|
|
669
|
+
"position": 185,
|
|
670
|
+
"placeholder": "tensile force",
|
|
671
|
+
"units": [
|
|
672
|
+
{ "key": "n", "label": "N", "nm": 1 },
|
|
673
|
+
{ "key": "kn", "label": "kN", "nm": 0.001 },
|
|
674
|
+
{ "key": "mn", "label": "mN", "nm": 1000 }
|
|
675
|
+
]
|
|
676
|
+
},
|
|
677
|
+
{
|
|
678
|
+
"type": "numeric",
|
|
679
|
+
"field": "tensile_stress",
|
|
680
|
+
"label": "Tensile stress",
|
|
681
|
+
"default": "",
|
|
682
|
+
"position": 186,
|
|
683
|
+
"placeholder": "tensile stress",
|
|
684
|
+
"units": [
|
|
685
|
+
{ "key": "n_cm2", "label": "N cm<sup>-2</sup>", "nm": 1 },
|
|
686
|
+
{ "key": "n_mm2", "label": "N mm<sup>-2</sup>", "nm": 0.01 }
|
|
687
|
+
]
|
|
688
|
+
},
|
|
543
689
|
{
|
|
544
690
|
"type": "numeric",
|
|
545
691
|
"field": "turnover_number",
|
|
@@ -575,7 +721,7 @@ module Labimotion
|
|
|
575
721
|
"field": "voltage",
|
|
576
722
|
"label": "Voltage",
|
|
577
723
|
"default": "",
|
|
578
|
-
"position":
|
|
724
|
+
"position": 206,
|
|
579
725
|
"placeholder": "voltage",
|
|
580
726
|
"units": [
|
|
581
727
|
{ "key": "mv", "label": "mV", "nm": 1000 },
|
|
@@ -597,6 +743,17 @@ module Labimotion
|
|
|
597
743
|
{ "key": "nl", "label": "nl", "nm": 1000000000 }
|
|
598
744
|
]
|
|
599
745
|
},
|
|
746
|
+
{
|
|
747
|
+
"type": "numeric",
|
|
748
|
+
"field": "volume_fraction",
|
|
749
|
+
"label": "Volume fraction",
|
|
750
|
+
"default": "",
|
|
751
|
+
"position": 218,
|
|
752
|
+
"placeholder": "volume fraction",
|
|
753
|
+
"units": [
|
|
754
|
+
{ "key": "vol_p", "label": "vol.%", "nm": 1 }
|
|
755
|
+
]
|
|
756
|
+
},
|
|
600
757
|
{
|
|
601
758
|
"type": "numeric",
|
|
602
759
|
"field": "volumes_metric",
|
|
@@ -610,6 +767,6 @@ module Labimotion
|
|
|
610
767
|
{ "key": "m3", "label": "m³", "nm": 0.000001 }
|
|
611
768
|
]
|
|
612
769
|
}
|
|
613
|
-
|
|
770
|
+
]
|
|
614
771
|
end
|
|
615
772
|
end
|
data/lib/labimotion/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: labimotion
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 2.
|
|
4
|
+
version: 2.3.0.rc3
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Chia-Lin Lin
|
|
@@ -9,7 +9,7 @@ authors:
|
|
|
9
9
|
autorequire:
|
|
10
10
|
bindir: bin
|
|
11
11
|
cert_chain: []
|
|
12
|
-
date: 2026-07-
|
|
12
|
+
date: 2026-07-07 00:00:00.000000000 Z
|
|
13
13
|
dependencies:
|
|
14
14
|
- !ruby/object:Gem::Dependency
|
|
15
15
|
name: caxlsx
|