labimotion 1.5.0.rc4 → 1.5.0.rc6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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metadata.gz: 1a8123a3e71db321a6b3efef15ecce3cca9e287bce32a268b5447c25dd6ed55d
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data.tar.gz: 36b88fb09d16d5ac4bc2a8eeae2775d20c9197d871e48df5e6dacc34b2934e23
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metadata.gz: 7695e71a516c3fba35fdae8cdb4d4b0081d4ca4da3802eb8703e43189a2dbbdbbe85413650a4d3699f262d9eeb92e6199f87a10a97a52aa7eb0927fab688e536
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data.tar.gz: cb9a7de785d9ddecd6d69d0be45b9323a08c5227cdf7c0e4ed1db2063aaa47b306045534d30a9c5daa5d8c83624b642418badea4810cc9e9fd49a35f6700a753
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@@ -12,5 +12,55 @@ module Labimotion
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def klass_label
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object&.dataset_klass&.label
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end
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def root_element
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object&.element&.root_element
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end
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def properties
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properties = object&.properties || {}
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properties[Labimotion::Prop::LAYERS].keys.each do |key|
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layer = properties[Labimotion::Prop::LAYERS][key] || {}
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return properties if layer.empty? || layer[Labimotion::Prop::FIELDS].nil?
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field_vocs = layer[Labimotion::Prop::FIELDS].select { |ss| ss['is_voc'] == true }
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field_vocs.each do |field|
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idx = properties[Labimotion::Prop::LAYERS][key][Labimotion::Prop::FIELDS].index(field)
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next if idx.nil?
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case field['source']
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when Labimotion::Prop::ELEMENT
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if field['identifier'] == 'element.name'
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byebug
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properties[Labimotion::Prop::LAYERS][key][Labimotion::Prop::FIELDS][idx]['value'] = root_element&.name
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# dic[field.identifier] = currentElement.name
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end
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when Labimotion::Prop::SEGMENT
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segs = root_element&.segments&.select { |ss| field['source_id'] == ss.segment_klass&.identifier }
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next if segs.empty? || field['layer_id'].blank? || field['field_id'].blank?
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seg = segs&.first
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seg_fields = seg.properties.dig(Labimotion::Prop::LAYERS, field['layer_id'], Labimotion::Prop::FIELDS).select { |ff| ff['field'] == field['field_id'] }
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seg_field = seg_fields&.first
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properties[Labimotion::Prop::LAYERS][key][Labimotion::Prop::FIELDS][idx]['value'] = seg_field['value']
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when Labimotion::Prop::DATASET
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byebug
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end
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end
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# layer[Labimotion::Prop::FIELDS].each do |field|
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# end
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end
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# byebug
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# layers = properties['layers']
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# properties['vocabularies'].each_with_object({}) do |v, h|
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# h[v['name']] = v['value']
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# end
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properties
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end
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end
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end
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# end
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expose :voc do |obj|
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-
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## byebug
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voc = (obj[:properties] && obj[:properties]['voc']) || {}
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case voc['source']
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when Labimotion::Prop::ELEMENT
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if voc['identifier'] == 'element.name'
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# byebug
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# voc['source_name'] = ElementKlass.find_by(identifier: voc['source_id'])&.name
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end
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when Labimotion::Prop::SEGMENT
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voc['source_name'] = SegmentKlass.find_by(identifier: voc['source_id'])&.label
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when Labimotion::Prop::DATASET
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voc['source_name'] = DatasetKlass.find_by(identifier: voc['source_id'])&.label
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end
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voc
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end
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expose :ontology do |obj|
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(obj[:properties] && obj[:properties]['ontology']) || {}
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@@ -0,0 +1,22 @@
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[
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{
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"id": 9,
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"identifier": "solvent",
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"name": "Solvent",
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"label": "NMR Solvent",
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"field_type": "text",
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"opid": 7,
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"term_id": "NMR:1000330",
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"source": "Standard"
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},
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{
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"id": 11,
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"identifier": "temperature",
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"name": "Temperature",
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"label": "Temperature",
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"field_type": "text",
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"opid": 0,
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"term_id": "NMR:1400025",
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"source": "Standard"
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}
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]
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[
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{
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"id": 1,
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"identifier": "dateTime.create",
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"name": "Create Time",
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"label": "Create Time",
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"field_type": "datetime",
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"opid": 9,
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"term_id": "NCIT_C164483",
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"ontology": {
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"id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C164483",
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"iri": "http://purl.obolibrary.org/obo/NCIT_C164483",
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"type": "class",
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"label": "Created Date",
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"obo_id": "NCIT:C164483",
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"short_form": "NCIT_C164483",
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"description": [
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"The date on which the activity or entity is created."
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],
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"ontology_name": "ncit",
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"ontology_prefix": "NCIT"
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},
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"source": "System",
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"voc": {
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"source": "System"
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}
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},
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{
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"id": 2,
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"identifier": "dateTime.update",
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"name": "Update Time",
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"label": "Update Time",
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"field_type": "datetime",
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"opid": 9,
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"term_id": "NCIT_C25164",
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"ontology": {
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"id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C25710",
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"iri": "http://purl.obolibrary.org/obo/NCIT_C25710",
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"short_form": "NCIT_C25710",
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"obo_id": "NCIT:C25710",
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"label": "Update",
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"description": [
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"Make current; supply with recent information or technology."
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],
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"ontology_name": "ncit",
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"ontology_prefix": "NCIT",
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"type": "class"
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},
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"source": "System",
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"voc": {
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"source": "System"
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}
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},
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{
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"id": 4,
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"identifier": "user.name",
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"name": "creator",
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"label": "creator",
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"field_type": "text",
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"opid": 9,
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"term_id": "NCIT_C42628",
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"ontology": {
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"id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C42628",
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"iri": "http://purl.obolibrary.org/obo/NCIT_C42628",
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"type": "class",
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"label": "Created By",
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"obo_id": "NCIT:C42628",
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"short_form": "NCIT_C42628",
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"description": [
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"Indicates the person or authoritative body who brought the item into existence."
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],
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"ontology_name": "ncit",
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"ontology_prefix": "NCIT"
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},
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"source": "User",
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"voc": {
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"source": "User"
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}
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},
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{
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"id": 2,
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"identifier": "element.id",
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"name": "Element Id",
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"label": "Element Id",
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"field_type": "text",
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"opid": 9,
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"term_id": "NCIT_C25364",
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"source": "Element",
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"voc": {
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"source": "Element"
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}
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},
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{
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"id": 5,
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"identifier": "element.name",
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"name": "Element Name",
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"label": "Element Name",
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"field_type": "text",
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"opid": 8,
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"term_id": "NCIT_C42694",
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"source": "Element",
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"voc": {
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"source": "Element"
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}
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},
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{
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"id": 3,
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"identifier": "element.short_label",
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"name": "Element Short Label",
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"label": "Element Short Label",
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"field_type": "text",
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"opid": 9,
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"term_id": "NCIT_C45561",
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"source": "Element",
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"voc": {
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"source": "Element"
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}
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}
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]
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data/lib/labimotion/version.rb
CHANGED
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--- !ruby/object:Gem::Specification
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name: labimotion
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version: !ruby/object:Gem::Version
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version: 1.5.0.
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version: 1.5.0.rc6
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platform: ruby
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authors:
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- Chia-Lin Lin
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2024-10-
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date: 2024-10-11 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rails
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- lib/labimotion/helpers/vocabulary_helpers.rb
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- lib/labimotion/libs/attachment_handler.rb
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- lib/labimotion/libs/converter.rb
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- lib/labimotion/libs/data/vocab/Standard.json
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- lib/labimotion/libs/data/vocab/System.json
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- lib/labimotion/libs/export_dataset.rb
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- lib/labimotion/libs/export_element.rb
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- lib/labimotion/libs/nmr_mapper.rb
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