labimotion 1.4.1 → 2.0.0.rc8

data/lib/labimotion/libs/data/vocab/System.json

@@ -0,0 +1,131 @@
+[
+  {
+    "id": 1,
+    "identifier": "dateTime-create",
+    "name": "create_time",
+    "label": "Create Time",
+    "field_type": "datetime",
+    "opid": 9,
+    "term_id": "NCIT_C164483",
+    "ontology": {
+      "id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C164483",
+      "iri": "http://purl.obolibrary.org/obo/NCIT_C164483",
+      "type": "class",
+      "label": "Created Date",
+      "obo_id": "NCIT:C164483",
+      "short_form": "NCIT_C164483",
+      "description": [
+        "The date on which the activity or entity is created."
+      ],
+      "ontology_name": "ncit",
+      "ontology_prefix": "NCIT"
+    },
+    "source": "System",
+    "voc": {
+      "source": "System"
+    }
+  },
+  {
+    "id": 2,
+    "identifier": "dateTime-update",
+    "name": "update_time",
+    "label": "Update Time",
+    "field_type": "datetime",
+    "opid": 9,
+    "term_id": "NCIT_C25164",
+    "ontology": {
+      "id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C25710",
+      "iri": "http://purl.obolibrary.org/obo/NCIT_C25710",
+      "short_form": "NCIT_C25710",
+      "obo_id": "NCIT:C25710",
+      "label": "Update",
+      "description": [
+        "Make current; supply with recent information or technology."
+      ],
+      "ontology_name": "ncit",
+      "ontology_prefix": "NCIT",
+      "type": "class"
+    },
+    "source": "System",
+    "voc": {
+      "source": "System"
+    }
+  },
+  {
+    "id": 4,
+    "identifier": "user-name",
+    "name": "creator",
+    "label": "Creator",
+    "field_type": "text",
+    "opid": 9,
+    "term_id": "NCIT_C42628",
+    "ontology": {
+      "id": "ncit:class:http://purl.obolibrary.org/obo/NCIT_C42628",
+      "iri": "http://purl.obolibrary.org/obo/NCIT_C42628",
+      "type": "class",
+      "label": "Created By",
+      "obo_id": "NCIT:C42628",
+      "short_form": "NCIT_C42628",
+      "description": [
+        "Indicates the person or authoritative body who brought the item into existence."
+      ],
+      "ontology_name": "ncit",
+      "ontology_prefix": "NCIT"
+    },
+    "source": "User",
+    "voc": {
+      "source": "User"
+    }
+  },
+  {
+    "id": 2,
+    "identifier": "element-id",
+    "name": "element_id",
+    "label": "Element Id",
+    "field_type": "text",
+    "opid": 9,
+    "term_id": "NCIT_C25364",
+    "source": "Element",
+    "voc": {
+      "source": "Element"
+    }
+  },
+  {
+    "id": 5,
+    "identifier": "element-name",
+    "name": "element_name",
+    "label": "Element Name",
+    "field_type": "text",
+    "opid": 8,
+    "term_id": "NCIT_C42694",
+    "source": "Element",
+    "voc": {
+      "source": "Element"
+    }
+  },
+  {
+    "id": 3,
+    "identifier": "element-short_label",
+    "name": "element_short_label",
+    "label": "Element Short Label",
+    "field_type": "text",
+    "opid": 9,
+    "term_id": "NCIT_C45561",
+    "source": "Element",
+    "voc": {
+      "source": "Element"
+    }
+  },
+  {
+    "id": 3,
+    "identifier": "element-class",
+    "name": "element_class",
+    "label": "Element Class",
+    "field_type": "text",
+    "opid": 9,
+    "source": "Element",
+    "voc": {
+      "source": "Element"
+    }
+  }
+]

data/lib/labimotion/libs/dataset_builder.rb

@@ -0,0 +1,70 @@
+# frozen_string_literal: true
+
+require 'labimotion/utils/utils'
+require 'labimotion/version'
+
+module Labimotion
+  class DatasetBuilder
+    def self.build(container, content)
+      return unless valid_input?(container, content)
+
+      create_dataset_with_metadata(container, content)
+    end
+
+    private
+
+    def self.valid_input?(container, content)
+      container.present? &&
+        content.present? &&
+        content[:ols].present? &&
+        content[:metadata].present?
+    end
+
+    def self.create_dataset_with_metadata(container, content)
+      klass = find_dataset_klass(content[:ols])
+      return unless klass
+
+      dataset = create_dataset(container, klass)
+      build_result(dataset, content)
+    end
+
+    def self.find_dataset_klass(ols_term_id)
+      Labimotion::DatasetKlass.find_by(ols_term_id: ols_term_id)
+    end
+
+    def self.create_dataset(container, klass)
+      uuid = SecureRandom.uuid
+      props = prepare_properties(klass, uuid)
+
+      Labimotion::Dataset.create!(
+        uuid: uuid,
+        dataset_klass_id: klass.id,
+        element_type: 'Container',
+        element_id: container.id,
+        properties: props,
+        properties_release: klass.properties_release,
+        klass_uuid: klass.uuid
+      )
+    end
+
+    def self.prepare_properties(klass, uuid)
+      props = klass.properties_release
+      props['uuid'] = uuid
+      props['pkg'] = Labimotion::Utils.pkg(props['pkg'])
+      props['klass'] = 'Dataset'
+      props
+    end
+
+    def self.build_result(dataset, content)
+      {
+        dataset: dataset,
+        metadata: content[:metadata],
+        ols: content[:ols],
+        parameters: content[:parameters]
+      }
+    end
+
+    private_class_method :valid_input?, :create_dataset_with_metadata, :find_dataset_klass, :create_dataset,
+                         :prepare_properties, :build_result
+  end
+end