labimotion 1.3.0.rc2 → 1.3.0.rc4
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- checksums.yaml +4 -4
- data/lib/labimotion/apis/generic_element_api.rb +18 -17
- data/lib/labimotion/collection/import.rb +3 -3
- data/lib/labimotion/helpers/element_helpers.rb +0 -5
- data/lib/labimotion/libs/converter.rb +8 -27
- data/lib/labimotion/libs/export_dataset.rb +3 -12
- data/lib/labimotion/libs/export_element.rb +89 -25
- data/lib/labimotion/libs/nmr_mapper.rb +2 -15
- data/lib/labimotion/utils/field_type.rb +2 -0
- data/lib/labimotion/utils/units.rb +465 -0
- data/lib/labimotion/version.rb +1 -2
- metadata +4 -6
- data/lib/labimotion/libs/export_element copy.rb +0 -204
- data/lib/labimotion/libs/export_element2.rb +0 -160
- data/lib/labimotion/libs/export_element_bak1.rb +0 -118
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module Labimotion
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## Converter State
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class Units
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FIELDS = [
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{
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"type": "numeric",
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"field": "acceleration",
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"label": "Acceleration",
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"default": "",
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"position": 10,
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"placeholder": "acceleration",
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"units": [{ "key": "mm_s2", "label": "mm/s<sup>2</sup>" }]
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},
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{
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"type": "numeric",
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"field": "agitation",
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"label": "Agitation",
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"default": "",
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"position": 20,
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"placeholder": "agitation",
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"units": [{ "key": "rpm", "label": "rpm" }]
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},
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{
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"type": "numeric",
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"field": "amount_enzyme",
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"label": "Amount enzyme as μmol/min",
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"default": "",
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"position": 30,
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"placeholder": "amount enzyme as μmol/min",
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"units": [
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{ "key": "u", "label": "U", "nm": 1 },
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{ "key": "mu", "label": "mU", "nm": 1000 },
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{ "key": "kat", "label": "kat", "nm": 1.667e-8 },
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{ "key": "mkat", "label": "mkat", "nm": 1.667e-5 },
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{ "key": "µkat", "label": "µkat", "nm": 0.01667 },
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{ "key": "nkat", "label": "nkat", "nm": 16.67 }
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]
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},
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{
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"type": "numeric",
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"field": "amount_substance",
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"label": "Amount of substance",
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"default": "",
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"position": 35,
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"placeholder": "amount of substance",
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"units": [
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{ "key": "mol", "label": "mol (M)", "nm": 1 },
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{ "key": "mmol", "label": "mmol (mM)", "nm": 1000 },
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{ "key": "umol", "label": "µmol (µM)", "nm": 1000000 },
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{ "key": "nmol", "label": "nmol (nM)", "nm": 1.0e9 },
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{ "key": "pmol", "label": "pmol (pM)", "nm": 1.0e12 }
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]
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},
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{
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"type": "numeric",
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"field": "molarity",
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"label": "Chem. concentration (Molarity)",
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"default": "",
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"position": 40,
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"placeholder": "molarity",
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"units": [
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{ "key": "mol_l", "label": "mol/L (M/L)", "nm": 1 },
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{ "key": "mmol_l", "label": "mmol/L (mM/L)", "nm": 1000 },
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{ "key": "umol_l", "label": "µmol/L (µM/L)", "nm": 1000000 },
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{ "key": "nmol_l", "label": "nmol/L (nM/L)", "nm": 1000000000 },
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{ "key": "pmol_l", "label": "pmol/L (pM/L)", "nm": 1000000000000 }
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]
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},
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{
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"type": "numeric",
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"field": "chem_distances",
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"label": "Chem. distances",
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"default": "",
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"position": 50,
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"placeholder": "Chem. distances",
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"units": [{ "key": "angstrom", "label": "Å" }]
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},
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{
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"type": "numeric",
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"field": "concentration",
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"label": "Concentration",
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"default": "",
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"position": 60,
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"placeholder": "concentration",
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"units": [
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{ "key": "ng_l", "label": "ng/L", "nm": 1000000 },
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{ "key": "mg_l", "label": "mg/L", "nm": 1000 },
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{ "key": "g_l", "label": "g/L", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "conductivity",
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"label": "Conductivity",
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"default": "",
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"position": 66,
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"placeholder": "conductivity",
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"units": [{ "key": "s_m", "label": "S/m", "nm": 1 }]
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},
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{
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"type": "numeric",
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"field": "current",
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"label": "Current",
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"default": "",
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"position": 60,
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"placeholder": "Current",
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"units": [
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{ "key": "A", "label": "A", "nm": 1 },
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{ "key": "mA", "label": "mA", "nm": 1000 },
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{ "key": "uA", "label": "µA", "nm": 1000000 },
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{ "key": "nA", "label": "nA", "nm": 1000000000 }
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]
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},
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{
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"type": "numeric",
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"field": "degree",
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"label": "Degree",
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"default": "",
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"position": 70,
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"placeholder": "degree",
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"units": [{ "key": "degree", "label": "°" }]
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},
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{
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"type": "numeric",
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"field": "density",
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"label": "Density",
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"default": "",
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"position": 75,
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"placeholder": "density",
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"units": [
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{ "key": "g_cm3", "label": "g/cm<sup>3</sup>", "nm": 1 },
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{ "key": "kg_l", "label": "kg/l", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "duration",
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"label": "Duration",
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"default": "",
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"position": 80,
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"placeholder": "duration",
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"units": [
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{ "key": "d", "label": "d", "nm": 1 },
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{ "key": "h", "label": "h", "nm": 24 },
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{ "key": "min", "label": "m", "nm": 1440 },
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{ "key": "s", "label": "s", "nm": 86400 }
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]
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},
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{
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"type": "numeric",
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"field": "elastic_modulus",
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"label": "Elastic modulus",
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"default": "",
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"position": 84,
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"placeholder": "Elastic modulus",
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"units": [
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{ "key": "m_pa", "label": "MPa", "nm": 1 },
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{ "key": "k_pa", "label": "kPa", "nm": 1000 },
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{ "key": "pa", "label": "Pa", "nm": 1000000 }
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]
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},
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{
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"type": "numeric",
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"field": "electric_charge_c",
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"label": "Electric Charge in C",
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"default": "",
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"position": 85,
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"placeholder": "Electric Charge in C",
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"units": [{ "key": "ec_c", "label": "C", "nm": 1 }]
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},
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{
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"type": "numeric",
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"field": "electric_field",
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"label": "Electric field",
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"default": "",
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"position": 86,
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"placeholder": "Electric field",
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"units": [{ "key": "v_m", "label": "V/m", "nm": 1 }]
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},
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{
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"type": "numeric",
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"field": "energy",
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"label": "Energy",
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"default": "",
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"position": 88,
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"placeholder": "Joule",
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"units": [
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{ "key": "eV", "label": "eV", "nm": 6.241509e21 },
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{ "key": "keV", "label": "keV", "nm": 6.241509e18 },
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{ "key": "j", "label": "J", "nm": 1000 },
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{ "key": "k_j", "label": "kJ", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "enzyme_activity",
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"label": "Enzyme activity",
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"default": "",
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"position": 90,
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"placeholder": "Enzyme activity",
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"units": [
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{ "key": "u_l", "label": "U/L", "nm": 1 },
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{ "key": "u_ml", "label": "U/mL", "nm": 1000 }
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]
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},
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{
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"type": "numeric",
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"field": "faraday",
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"label": "Faraday",
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"default": "",
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"position": 95,
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"placeholder": "Faraday",
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"units": [
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{ "key": "faraday", "label": "C/m", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "flow_rate",
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"label": "Flow rate",
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"default": "",
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"position": 100,
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"placeholder": "Flow rate",
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"units": [
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{ "key": "ul_min", "label": "µl/min", "nm": 1000000 },
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{ "key": "ml_min", "label": "ml/min", "nm": 1000 },
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{ "key": "l_m", "label": "l/m", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "frequency",
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"label": "Frequency",
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"default": "",
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"position": 100,
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"placeholder": "frequency",
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"units": [
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{ "key": "mhz", "label": "MHz", "nm": 1000000 },
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{ "key": "hz", "label": "Hz", "nm": 1000 },
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{ "key": "khz", "label": "kHz", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "heating_rate",
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"label": "Heating rate",
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"default": "",
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"position": 106,
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"placeholder": "heating rate",
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"units": [{ "key": "k_min", "label": "K/min", "nm": 1 }]
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},
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{
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"type": "numeric",
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"field": "length",
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"label": "Length",
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"default": "",
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"position": 110,
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"placeholder": "length",
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"units": [
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{ "key": "mm", "label": "mm", "nm": 1000 },
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{ "key": "cm", "label": "cm", "nm": 100 },
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{ "key": "m", "label": "m", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "magnetic_flux_density",
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"label": "Magnetic flux density/inductivity",
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"default": "",
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"position": 120,
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"placeholder": "",
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"units": [{ "key": "T", "label": "T", "nm": 1 }]
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},
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{
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"type": "numeric",
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"field": "mass",
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"label": "Mass",
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"default": "",
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"position": 120,
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"placeholder": "mass",
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"units": [
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{ "key": "g", "label": "g", "nm": 1 },
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{ "key": "mg", "label": "mg", "nm": 1000 },
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{ "key": "ug", "label": "µg", "nm": 1000000 }
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]
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},
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{
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"type": "numeric",
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"field": "mass_molecule",
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"label": "Mass of molecule",
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"default": "",
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"position": 126,
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"placeholder": "mass of molecule",
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"units": [
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{ "key": "dalton", "label": "D", "nm": 1000 },
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{ "key": "kilo_dalton", "label": "kD", "nm": 1 }
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]
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},
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{
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"type": "numeric",
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"field": "molecular_weight",
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"label": "Molecular weight",
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"default": "",
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"position": 130,
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"placeholder": "Molecular weight",
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"units": [{ "key": "g_mol", "label": "g/mol" }]
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},
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{
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"type": "numeric",
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"field": "percentage",
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"label": "Percentage",
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|
+
"default": "",
|
|
313
|
+
"position": 136,
|
|
314
|
+
"placeholder": "percentage",
|
|
315
|
+
"units": [{ "key": "p", "label": "%", "nm": 1 }]
|
|
316
|
+
},
|
|
317
|
+
{
|
|
318
|
+
"type": "numeric",
|
|
319
|
+
"field": "pressure",
|
|
320
|
+
"label": "Pressure",
|
|
321
|
+
"default": "",
|
|
322
|
+
"position": 140,
|
|
323
|
+
"placeholder": "pressure",
|
|
324
|
+
"units": [
|
|
325
|
+
{ "key": "atm", "label": "atm", "nm": 1 },
|
|
326
|
+
{ "key": "pa", "label": "Pa", "nm": 101325 },
|
|
327
|
+
{ "key": "torr", "label": "Torr", "nm": 760 }
|
|
328
|
+
]
|
|
329
|
+
},
|
|
330
|
+
{
|
|
331
|
+
"type": "numeric",
|
|
332
|
+
"field": "reaction_rate",
|
|
333
|
+
"label": "Reaction rate",
|
|
334
|
+
"default": "",
|
|
335
|
+
"position": 150,
|
|
336
|
+
"placeholder": "Reaction rate",
|
|
337
|
+
"units": [
|
|
338
|
+
{ "key": "mol_lmin", "label": "mol/Lmin", "nm": 1 },
|
|
339
|
+
{ "key": "mol_lsec", "label": "mol/Ls", "nm": 60 }
|
|
340
|
+
]
|
|
341
|
+
},
|
|
342
|
+
{
|
|
343
|
+
"type": "numeric",
|
|
344
|
+
"field": "specific_volume",
|
|
345
|
+
"label": "Specific Volume",
|
|
346
|
+
"default": "",
|
|
347
|
+
"position": 160,
|
|
348
|
+
"placeholder": "Specific Volume",
|
|
349
|
+
"units": [{ "key": "cm3_g", "label": "cm<sup>3</sup>/g", "nm": 1 }]
|
|
350
|
+
},
|
|
351
|
+
{
|
|
352
|
+
"type": "numeric",
|
|
353
|
+
"field": "speed",
|
|
354
|
+
"label": "Speed",
|
|
355
|
+
"default": "",
|
|
356
|
+
"position": 165,
|
|
357
|
+
"placeholder": "speed",
|
|
358
|
+
"units": [
|
|
359
|
+
{ "key": "cm_s", "label": "cm/s", "nm": 1 },
|
|
360
|
+
{ "key": "mm_s", "label": "mm/s", "nm": 10 },
|
|
361
|
+
{ "key": "um_m", "label": "µm/min", "nm": 600000 },
|
|
362
|
+
{ "key": "nm_m", "label": "nm/min", "nm": 60000000 },
|
|
363
|
+
{ "key": "cm_h", "label": "cm/h", "nm": 3600 },
|
|
364
|
+
{ "key": "mm_h", "label": "mm/h", "nm": 36000 }
|
|
365
|
+
]
|
|
366
|
+
},
|
|
367
|
+
{
|
|
368
|
+
"type": "numeric",
|
|
369
|
+
"field": "subatomic_length",
|
|
370
|
+
"label": "Subatomic length",
|
|
371
|
+
"default": "",
|
|
372
|
+
"position": 168,
|
|
373
|
+
"placeholder": "Subatomic length",
|
|
374
|
+
"units": [
|
|
375
|
+
{ "key": "um", "label": "µm", "nm": 1 },
|
|
376
|
+
{ "key": "nm", "label": "nm", "nm": 1000 },
|
|
377
|
+
{ "key": "pm", "label": "pm", "nm": 1000000 }
|
|
378
|
+
]
|
|
379
|
+
},
|
|
380
|
+
{
|
|
381
|
+
"type": "numeric",
|
|
382
|
+
"field": "surface",
|
|
383
|
+
"label": "Surface",
|
|
384
|
+
"default": "",
|
|
385
|
+
"position": 170,
|
|
386
|
+
"placeholder": "surface",
|
|
387
|
+
"units": [
|
|
388
|
+
{ "key": "a_2", "label": "A<sup>2</sup>", "nm": 1.0e16 },
|
|
389
|
+
{ "key": "um_2", "label": "µm<sup>2</sup>", "nm": 1.0e8 },
|
|
390
|
+
{ "key": "mm_2", "label": "mm<sup>2</sup>", "nm": 100 },
|
|
391
|
+
{ "key": "cm_2", "label": "cm<sup>2</sup>", "nm": 1 }
|
|
392
|
+
]
|
|
393
|
+
},
|
|
394
|
+
{
|
|
395
|
+
"type": "numeric",
|
|
396
|
+
"field": "temperature",
|
|
397
|
+
"label": "Temperature",
|
|
398
|
+
"default": "",
|
|
399
|
+
"position": 180,
|
|
400
|
+
"placeholder": "temperature",
|
|
401
|
+
"units": [
|
|
402
|
+
{ "key": "C", "label": "°C" },
|
|
403
|
+
{ "key": "F", "label": "°F" },
|
|
404
|
+
{ "key": "K", "label": "K" }
|
|
405
|
+
]
|
|
406
|
+
},
|
|
407
|
+
{
|
|
408
|
+
"type": "numeric",
|
|
409
|
+
"field": "turnover_number",
|
|
410
|
+
"label": "Turnover number",
|
|
411
|
+
"default": "",
|
|
412
|
+
"position": 190,
|
|
413
|
+
"placeholder": "Turnover number",
|
|
414
|
+
"units": [{ "key": "1_s", "label": "1/s", "nm": 1 }, { "key": "1_m", "label": "1/m", "nm": 60 }]
|
|
415
|
+
},
|
|
416
|
+
{
|
|
417
|
+
"type": "numeric",
|
|
418
|
+
"field": "viscosity",
|
|
419
|
+
"label": "Dynamic Viscosity",
|
|
420
|
+
"default": "",
|
|
421
|
+
"position": 200,
|
|
422
|
+
"placeholder": "Dynamic Viscosity",
|
|
423
|
+
"units": [
|
|
424
|
+
{ "key": "pas", "label": "Pas", "nm": 1 },
|
|
425
|
+
{ "key": "mpas", "label": "mPas", "nm": 1000 }
|
|
426
|
+
]
|
|
427
|
+
},
|
|
428
|
+
{
|
|
429
|
+
"type": "numeric",
|
|
430
|
+
"field": "kinematic_viscosity",
|
|
431
|
+
"label": "Kinematic Viscosity",
|
|
432
|
+
"default": "",
|
|
433
|
+
"position": 205,
|
|
434
|
+
"placeholder": "Kinematic Viscosity",
|
|
435
|
+
"units": [{ "key": "m2_s", "label": "m<sup>2</sup>/s", "nm": 1 }]
|
|
436
|
+
},
|
|
437
|
+
{
|
|
438
|
+
"type": "numeric",
|
|
439
|
+
"field": "voltage",
|
|
440
|
+
"label": "Voltage",
|
|
441
|
+
"default": "",
|
|
442
|
+
"position": 200,
|
|
443
|
+
"placeholder": "voltage",
|
|
444
|
+
"units": [
|
|
445
|
+
{ "key": "mv", "label": "mV", "nm": 1000 },
|
|
446
|
+
{ "key": "v", "label": "V", "nm": 1 }
|
|
447
|
+
]
|
|
448
|
+
},
|
|
449
|
+
{
|
|
450
|
+
"type": "numeric",
|
|
451
|
+
"field": "volumes",
|
|
452
|
+
"label": "Volumes",
|
|
453
|
+
"default": "",
|
|
454
|
+
"position": 210,
|
|
455
|
+
"placeholder": "volume",
|
|
456
|
+
"units": [
|
|
457
|
+
{ "key": "l", "label": "l", "nm": 1 },
|
|
458
|
+
{ "key": "ml", "label": "ml", "nm": 1000 },
|
|
459
|
+
{ "key": "ul", "label": "µl", "nm": 1000000 },
|
|
460
|
+
{ "key": "nl", "label": "nl", "nm": 1000000000 }
|
|
461
|
+
]
|
|
462
|
+
}
|
|
463
|
+
]
|
|
464
|
+
end
|
|
465
|
+
end
|
data/lib/labimotion/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: labimotion
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 1.3.0.
|
|
4
|
+
version: 1.3.0.rc4
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- Chia-Lin Lin
|
|
@@ -9,7 +9,7 @@ authors:
|
|
|
9
9
|
autorequire:
|
|
10
10
|
bindir: bin
|
|
11
11
|
cert_chain: []
|
|
12
|
-
date: 2024-
|
|
12
|
+
date: 2024-04-04 00:00:00.000000000 Z
|
|
13
13
|
dependencies:
|
|
14
14
|
- !ruby/object:Gem::Dependency
|
|
15
15
|
name: rails
|
|
@@ -66,10 +66,7 @@ files:
|
|
|
66
66
|
- lib/labimotion/helpers/segment_helpers.rb
|
|
67
67
|
- lib/labimotion/libs/converter.rb
|
|
68
68
|
- lib/labimotion/libs/export_dataset.rb
|
|
69
|
-
- lib/labimotion/libs/export_element copy.rb
|
|
70
69
|
- lib/labimotion/libs/export_element.rb
|
|
71
|
-
- lib/labimotion/libs/export_element2.rb
|
|
72
|
-
- lib/labimotion/libs/export_element_bak1.rb
|
|
73
70
|
- lib/labimotion/libs/nmr_mapper.rb
|
|
74
71
|
- lib/labimotion/libs/properties_handler.rb
|
|
75
72
|
- lib/labimotion/libs/sample_association.rb
|
|
@@ -104,9 +101,10 @@ files:
|
|
|
104
101
|
- lib/labimotion/utils/prop.rb
|
|
105
102
|
- lib/labimotion/utils/search.rb
|
|
106
103
|
- lib/labimotion/utils/serializer.rb
|
|
104
|
+
- lib/labimotion/utils/units.rb
|
|
107
105
|
- lib/labimotion/utils/utils.rb
|
|
108
106
|
- lib/labimotion/version.rb
|
|
109
|
-
homepage: https://
|
|
107
|
+
homepage: https://github.com/LabIMotion/labimotion
|
|
110
108
|
licenses:
|
|
111
109
|
- AGPL-3.0
|
|
112
110
|
metadata: {}
|