labimotion 0.1.15 → 0.1.16
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/labimotion/apis/generic_dataset_api.rb +4 -3
- data/lib/labimotion/apis/generic_element_api.rb +4 -3
- data/lib/labimotion/apis/segment_api.rb +4 -3
- data/lib/labimotion/helpers/dataset_helpers.rb +14 -6
- data/lib/labimotion/helpers/element_helpers.rb +19 -7
- data/lib/labimotion/helpers/generic_helpers.rb +9 -8
- data/lib/labimotion/helpers/segment_helpers.rb +20 -8
- data/lib/labimotion/libs/template_hub.rb +8 -4
- data/lib/labimotion/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 95752e2c3001d5de57f899a05dc5e348611cd3408a7fe1a1448ee426edf56437
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data.tar.gz: b8715b44806c7586c71c05534e83147ec33a0648f771bd3867b0212440cdaa69
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 45faeec9d12b78dec9838b47ac863f4492ae1808f84e4777f38d9a3137e60b74c238827ceff45639a003535906e6ec9a339d669cbc935eba62bbcb0e1157533f
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data.tar.gz: a19c0cd0422952d57e1151ffe87ddc032e1e18f2029ab860284a094f6ad5d645665771f7705dd7a39bfd139d524ab67a0635c936f1a46f981f55ef16b7188ed1
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@@ -30,7 +30,7 @@ module Labimotion
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namespace :fetch_repo do
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desc 'fetch Generic Dataset Klass from Chemotion Repository'
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get do
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fetch_repo('DatasetKlass')
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fetch_repo('DatasetKlass', current_user)
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end
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end
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@@ -40,8 +40,9 @@ module Labimotion
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requires :identifier, type: String, desc: 'Identifier'
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end
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post do
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create_repo_klass(params, current_user)
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msg = create_repo_klass(params, current_user, request.headers['Origin'])
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klass = Labimotion::DatasetKlassEntity.represent(DatasetKlass.all)
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{ status: msg[:status], message: msg[:message], klass: klass }
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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{ error: e.message }
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@@ -196,7 +196,7 @@ module Labimotion
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namespace :fetch_repo do
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desc 'fetch Generic Element Klass from Chemotion Repository'
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get do
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fetch_repo('ElementKlass')
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fetch_repo('ElementKlass', current_user)
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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[]
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@@ -209,8 +209,9 @@ module Labimotion
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requires :identifier, type: String, desc: 'Identifier'
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end
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post do
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create_repo_klass(params, current_user)
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msg = create_repo_klass(params, current_user, request.headers['Origin'])
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klass = Labimotion::ElementKlassEntity.represent(ElementKlass.all)
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{ status: msg[:status], message: msg[:message], klass: klass }
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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{ error: e.message }
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@@ -118,7 +118,7 @@ module Labimotion
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namespace :fetch_repo do
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desc 'fetch Generic Segment Klass from Chemotion Repository'
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get do
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fetch_repo('SegmentKlass')
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fetch_repo('SegmentKlass', current_user)
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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{ error: e.message }
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@@ -131,8 +131,9 @@ module Labimotion
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requires :identifier, type: String, desc: 'Identifier'
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end
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post do
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create_repo_klass(params, current_user)
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msg = create_repo_klass(params, current_user, request.headers['Origin'])
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klass = Labimotion::SegmentKlassEntity.represent(SegmentKlass.all)
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{ status: msg[:status], message: msg[:message], klass: klass }
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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## { error: e.message }
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@@ -13,8 +13,8 @@ module Labimotion
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end
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end
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def create_repo_klass(params, current_user)
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response = Labimotion::TemplateHub.fetch_identifier('DatasetKlass', params[:identifier])
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def create_repo_klass(params, current_user, origin)
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response = Labimotion::TemplateHub.fetch_identifier('DatasetKlass', params[:identifier], origin)
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attributes = response.slice('ols_term_id', 'label', 'desc', 'uuid', 'identifier', 'properties_release', 'version') # .except(:id, :is_active, :place, :created_by, :created_at, :updated_at)
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attributes['properties_release']['identifier'] = attributes['identifier']
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attributes['properties_template'] = attributes['properties_release']
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@@ -23,14 +23,22 @@ module Labimotion
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attributes['updated_by'] = current_user.id
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attributes['sync_by'] = current_user.id
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attributes['sync_time'] = DateTime.now
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dataset_klass = Labimotion::DatasetKlass.find_by(ols_term_id: attributes['ols_term_id'])
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if dataset_klass.present?
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if dataset_klass['uuid'] == attributes['uuid'] && dataset_klass['version'] == attributes['version']
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{ status: 'success', message: "This dataset: #{attributes['label']} has the latest version!" }
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else
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ds = Labimotion::DatasetKlass.find_by(ols_term_id: attributes['ols_term_id'])
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ds.update!(attributes)
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ds.create_klasses_revision(current_user)
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{ status: 'success', message: "This dataset: [#{attributes['label']}] has been upgraded to the version: #{attributes['version']}!" }
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end
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else
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attributes['created_by'] = current_user.id
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ds = Labimotion::DatasetKlass.create!(attributes)
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ds.create_klasses_revision(current_user)
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{ status: 'success', message: "The dataset: #{attributes['label']} has been created using version: #{attributes['version']}!" }
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end
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ds.create_klasses_revision(current_user)
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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# { error: e.message }
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raise e
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end
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def create_repo_klass(params, current_user)
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response = Labimotion::TemplateHub.fetch_identifier('ElementKlass', params[:identifier])
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attributes = response.slice('name', 'label', 'desc', 'icon_name', 'klass_prefix', 'is_generic', 'identifier', 'properties_release', 'version')
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def create_repo_klass(params, current_user, origin)
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response = Labimotion::TemplateHub.fetch_identifier('ElementKlass', params[:identifier], origin)
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attributes = response.slice('name', 'label', 'desc', 'icon_name', 'uuid', 'klass_prefix', 'is_generic', 'identifier', 'properties_release', 'version')
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attributes['properties_release']['identifier'] = attributes['identifier']
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attributes['properties_template'] = attributes['properties_release']
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attributes['place'] = ((Labimotion::DatasetKlass.all.length * 10) || 0) + 10
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element_klass = Labimotion::ElementKlass.find_by(identifier: attributes['identifier'])
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if element_klass.present?
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element_klass
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if element_klass['uuid'] == attributes['uuid'] && element_klass['version'] == attributes['version']
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{ status: 'success', message: "This element: #{attributes['name']} has the latest version!" }
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else
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element_klass.update!(attributes)
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element_klass.create_klasses_revision(current_user)
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{ status: 'success', message: "This element: [#{attributes['name']}] has been upgraded to the version: #{attributes['version']}!" }
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end
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else
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attributes['
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exist_klass = Labimotion::ElementKlass.find_by(name: attributes['name'])
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if exist_klass.present?
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{ status: 'error', message: "The name [#{attributes['name']}] is already in use." }
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else
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attributes['created_by'] = current_user.id
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element_klass = Labimotion::ElementKlass.create!(attributes)
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element_klass.create_klasses_revision(current_user)
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{ status: 'success', message: "The element: #{attributes['name']} has been created using version: #{attributes['version']}!" }
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end
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end
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element_klass.create_klasses_revision(current_user)
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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# { error: e.message }
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Chemotion::Generic::Fetch::Template.list(API::TARGET, name)
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end
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def fetch_repo(name)
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current_klasses = "Labimotion::#{name}".constantize.where.not(identifier: nil)&.pluck(:identifier) || []
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def fetch_repo(name, current_user)
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# current_klasses = "Labimotion::#{name}".constantize.where.not(identifier: nil)&.pluck(:identifier) || []
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response = Labimotion::TemplateHub.list(name)
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if response && response['list'].present? && response['list'].length.positive?
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filter_list = response['list']&.reject do |ds|
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end || []
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end
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filter_list || []
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# if response && response['list'].present? && response['list'].length.positive?
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# filter_list = response['list']&.reject do |ds|
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# current_klasses.include?(ds['identifier'])
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# end || []
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# end
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# filter_list || []
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(response && response['list']) || []
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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{ error: 'Cannot connect to Chemotion Repository' }
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raise e
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end
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def create_repo_klass(params, current_user)
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response = Labimotion::TemplateHub.fetch_identifier('SegmentKlass', params[:identifier])
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def create_repo_klass(params, current_user, origin)
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response = Labimotion::TemplateHub.fetch_identifier('SegmentKlass', params[:identifier], origin)
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attributes = response.slice('label', 'desc', 'uuid', 'identifier', 'released_at', 'properties_release', 'version')
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attributes['properties_release']['identifier'] = attributes['identifier']
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attributes['properties_template'] = attributes['properties_release']
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attributes['sync_time'] = DateTime.now
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element_klass = Labimotion::ElementKlass.find_by(identifier: response['element_klass']['identifier'])
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element_klass = Labimotion::ElementKlass.find_by(name: response['element_klass']['name']) if element_klass.nil?
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return { error: '
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element_klass = Labimotion::ElementKlass.find_by(name: response['element_klass']['name'], is_generic: false) if element_klass.nil?
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return { status: 'error', message: "The element [#{response['element_klass']['name']}] does not exist in this instance" } if element_klass.nil?
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# el_attributes = response['element_klass'].slice('name', 'label', 'desc', 'uuid', 'identifier', 'icon_name', 'klass_prefix', 'is_generic', 'released_at')
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# el_attributes['properties_template'] = response['element_klass']['properties_release']
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attributes['element_klass_id'] = element_klass.id
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segment_klass = Labimotion::SegmentKlass.find_by(identifier: attributes['identifier'])
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if segment_klass.present?
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segment_klass
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if segment_klass['uuid'] == attributes['uuid'] && segment_klass['version'] == attributes['version']
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{ status: 'success', message: "This segment: #{attributes['label']} has the latest version!" }
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else
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segment_klass.update!(attributes)
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segment_klass.create_klasses_revision(current_user)
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{ status: 'success', message: "This segment: [#{attributes['label']}] has been upgraded to the version: #{attributes['version']}!" }
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end
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else
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attributes['
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exist_klass = Labimotion::SegmentKlass.find_by(label: attributes['label'], element_klass_id: element_klass.id)
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if exist_klass.present?
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{ status: 'error', message: "The segment [#{attributes['label']}] is already in use." }
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else
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attributes['created_by'] = current_user.id
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segment_klass = Labimotion::SegmentKlass.create!(attributes)
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segment_klass.create_klasses_revision(current_user)
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{ status: 'success', message: "The segment: #{attributes['label']} has been created using version: #{attributes['version']}!" }
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end
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end
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segment_klass.create_klasses_revision(current_user)
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rescue StandardError => e
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Labimotion.log_exception(e, current_user)
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raise e
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@@ -43,11 +43,15 @@ module Labimotion
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error!('Cannot connect to Chemotion Repository', 401)
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end
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def self.fetch_identifier(klass, identifier)
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response = HTTParty.
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def self.fetch_identifier(klass, identifier, origin)
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body = { klass: klass, identifier: identifier, origin: origin }
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response = HTTParty.post(
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uri('fetch'),
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body: body,
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timeout: 10
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)
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# response.parsed_response if response.code == 200
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JSON.parse(response.body) if response.code ==
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JSON.parse(response.body) if response.code == 201
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rescue StandardError => e
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Labimotion.log_exception(e)
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error!('Cannot connect to Chemotion Repository', 401)
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data/lib/labimotion/version.rb
CHANGED