knartform 0.6.0

data/lib/knartform.rb

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+module Knartform
+end
+
+require_relative 'knartform/action_group'
+require_relative 'knartform/knart'

data/lib/knartform/action_group.rb

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+module Knartform
+    class ActionGroup
+		attr_accessor	:knart
+		attr_accessor	:level
+        attr_accessor	:document
+        attr_accessor	:node
+
+		def initialize(level = 0)
+			self.level = level
+		end
+
+        def to_html
+            path = File.expand_path('../../views/action_group.slim', __FILE__)
+            html = Slim::Template.new(path, pretty: true, disable_escape: true).render(self)
+        end
+  end
+end

data/lib/knartform/knart.rb

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+require 'nokogiri'
+require 'slim'
+
+require_relative 'action_group'
+
+module Knartform
+    class Knart
+        attr_accessor :document
+        attr_accessor :type
+        HTML_OPTIONS = {}.freeze
+
+        def initialize(file)
+            load(file)
+    end
+
+        def load(file)
+            self.document = nil
+            self.type = nil
+            begin
+                puts "Loading #{file.path}..."
+                self.document = Nokogiri::XML(file) { |config| config.options = Nokogiri::XML::ParseOptions::STRICT }
+                self.type = document.xpath('//knart:knowledgeDocument/knart:metadata/knart:artifactType', knart: 'urn:hl7-org:knowledgeartifact:r1').first['value']
+                puts "Detected 'artifactType' of '#{type}'."
+            rescue Nokogiri::XML::SyntaxError => e
+                puts "Issue in KNART document: #{e}"
+            end
+        end
+
+        def loaded?
+            !document.nil?
+        end
+
+        def to_html(options = {})
+            opts = HTML_OPTIONS.merge(options)
+            html = nil
+            case type
+            when 'Documentation Template'
+                path = File.expand_path('../../views/documentation_template.slim', __FILE__)
+                html = Slim::Template.new(path, pretty: true, disable_escape: true).render(self)
+            else
+                path = File.expand_path('../../views/unsupported.slim', __FILE__)
+                html = Slim::Template.new(path, pretty: true).render(self)
+            end
+            html
+        end
+
+        def first_attribute(nodes, name)
+            nodes.empty? ? '' : nodes.first[name]
+        end
+
+        def dummy_edit_and_delete
+            path = File.expand_path('../../views/dummy_edit_and_delete.slim', __FILE__)
+            html = Slim::Template.new(path, pretty: true).render(self)
+        end
+
+        def dummy_add_button
+            path = File.expand_path('../../views/dummy_add_button.slim', __FILE__)
+            html = Slim::Template.new(path, pretty: true).render(self)
+        end
+
+        def dummy_edit_button
+            path = File.expand_path('../../views/dummy_edit_button.slim', __FILE__)
+            html = Slim::Template.new(path, pretty: true).render(self)
+          end
+
+        def dummy_drag_control
+            path = File.expand_path('../../views/dummy_drag_control.slim', __FILE__)
+            html = Slim::Template.new(path, pretty: true).render(self)
+            end
+    end
+end

data/lib/metadata.slim

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+h4 Metadata Items Section
+table.table.table-sm.table-striped
+	thead
+	tr
+		th(scope="col") Item
+		th(scope="col") Count
+	tbody
+	- result[:metadata].each do |k, count|
+		/ tr(class="#{result[:metadata][k] > 0 ? '': 'text-warning'}")
+		tr(class="#{result[:metadata][k] > 0 ? '': 'text-danger'}")
+		td = k
+		td = count

data/lib/spot_check.slim

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+doctype html
+html(lang="en")
+  head
+    meta(charset="utf-8")
+    meta(name="viewport" content="width=device-width, initial-scale=0.5, shrink-to-fit=no")
+    meta(name="description" content="")
+    meta(name="author" content="")
+    //- link(rel="icon" href="../../../../favicon.ico")
+    title Repository Spot Check Report
+
+
+    / Bootstrap
+    script(src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous")
+    script(src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.3/umd/popper.min.js" integrity="sha384-ZMP7rVo3mIykV+2+9J3UJ46jBk0WLaUAdn689aCwoqbBJiSnjAK/l8WvCWPIPm49" crossorigin="anonymous")
+    script(src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.1/js/bootstrap.min.js" integrity="sha384-smHYKdLADwkXOn1EmN1qk/HfnUcbVRZyYmZ4qpPea6sjB/pTJ0euyQp0Mk8ck+5T" crossorigin="anonymous")
+
+    // Bootstrap core CSS
+    link(href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.1/css/bootstrap.min.css" rel="stylesheet")
+    link(href="https://blackrockdigital.github.io/startbootstrap-clean-blog/css/clean-blog.min.css" rel="stylesheet")
+    / script(src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.1/js/bootstrap.bundle.min.js")
+
+    / DataTables support: https://datatables.net/examples/styling/bootstrap4
+    / link(href="//cdn.datatables.net/1.10.16/css/dataTables.bootstrap4.min.css" rel="stylesheet")
+    link(href="https://cdn.datatables.net/1.10.16/css/jquery.dataTables.min.css" rel="stylesheet")
+    / script(href="https://cdn.datatables.net/1.10.16/js/jquery.dataTables.min.js")
+    script(src="https://cdn.datatables.net/1.10.16/js/jquery.dataTables.min.js")
+
+
+
+    css:
+      	.card-columns {
+          column-count: 2;
+          column-gap: 30px;
+          padding-left: 30px;
+          padding-right: 30px;
+        }
+
+        .card {
+          position: relative;
+          display: inline-block;
+          width: 100%;
+        }
+
+        body {
+          font-size: 12px;
+        }
+    javascript:
+      $(document).ready(function() {
+        $('#identifiers').DataTable();
+        $('#resources').DataTable();
+        $('#publishers').DataTable();
+        $('#contributors').DataTable();
+        $('#supportingEvidence').DataTable();
+        $('#eventHistory').DataTable();
+        $('#applicability').DataTable();
+        $('#validations').DataTable();
+      } );
+
+  body
+    .container-fluid
+      .jumbotron
+        h1 Generated Spot Check Report
+        p.lead
+          | Summary information extracted from KNART XML documents.
+        h4 Table of Contents
+        h5 Composites
+        ol
+          - composites.each do |file, result|
+            li
+              a(href="##{file}") = result[:title]
+
+        h5 KNARTs
+        ol
+          - knarts.each do |file, result|
+            li
+              a(href="##{file}") = result[:title]
+        h5
+          a(href="#validations") Validations
+        h5 Cross-Document Consistency
+        ol
+          li
+            a(href="#identifiers") Identifiers
+          li
+            a(href="#resources") Resources
+          li
+            a(href="#publishers") Publishers
+          li
+            a(href="#contributors") Contributors
+          li
+            a(href="#supportingEvidence") Supporting Evidence
+          li
+            a(href="#eventHistory") Event History
+          li
+            a(href="#applicability") Applicability
+          li
+            a(href="#validations") Validations
+            
+
+      section
+        h1 Composites
+        .card-columns
+          - composites.each do |file, result|
+            .card(id="#{file}")
+              .card-body
+                h2.card-title = result[:title]
+                .card-subtitle = result[:artifactType]
+                small.text-muted = file
+
+                section
+                  == render_partial('metadata.slim', {result: result})
+
+                section
+                  h4
+                    | Artifacts (
+                    = result[:artifacts].length
+                    | )
+                  table.table.table-sm.table-striped
+                    thead
+                      tr
+                        th Name
+                        th Trigger
+                    tbody
+                      - result[:artifacts].each do |a|
+                        tr
+                          td
+                            = a.dig(:name, :value)
+                            |  (
+                            = a.dig(:artifactType, :value)
+                            | )
+                            br
+                            = a.dig(:reference, :url, :address)
+                            - if name = a.dig(:reference, :identifiers, :identifier, :identifierName)
+                              |  (
+                              small = name
+                              | )
+                            = a[:knowledgeDocument] ? '(embedded)' : nil
+                          td
+                            = a.dig(:eventBinding, :triggers, :trigger, :onEventName)
+                            / - a.dig(:eventBinding, :triggers)&.each do |t|
+                            /   = a.dig(:trigger, :onEventName)
+                  section
+                    / - svg = root + '/' + file + '.svg'
+                    - svg = file + '.svg'
+                    / - if File.exist?(File.dirname(__FILE__) + '/' + svg)
+                    h4 Flow Diagram
+                    small = svg
+                    br
+                    a(href="#{svg}" target="_blank")
+                      img(src="#{svg}" alt="Composite KNART Flow Diagram")
+
+      section
+        h1 KNARTs
+        .card-columns
+          - knarts.each do |file, result|
+            .card(id="#{file}")
+              .card-body
+                h4.card-title = result[:title]
+                .card-subtitle = result[:artifactType]
+                small.text-muted = file
+                hr
+                == render_partial('metadata.slim', {result: result})
+
+      section
+        h1 XML Validation
+        hr
+        table#validations.table.table-sm.table-striped
+          thead
+            tr
+              th File
+              th Result
+              th Errors
+              th Run At
+          tbody
+            - manifest['groups'].each do |group|
+              - group['items'].select{|n| n['validation']}.each do |item|
+                tr
+                  td = item['path']
+                  / item.dig('validation', 'passed')
+                  td
+                    = item.dig('validation', 'display')
+                    / | (
+                    / = item.dig('validation', 'code')
+                    / | )
+                  td = item.dig('validation', 'errors')
+                  td = item.dig('validation', 'run_at')
+
+
+      section
+        h1 KNART Consistency
+        hr
+
+        h2 Identifiers
+        table#identifiers.table.table-sm.table-striped
+          thead
+            tr
+              th Root
+              th Extension
+              th Name
+              th Version
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:identifiers/xmlns:identifier').each do |c|
+                tr
+                  td = c.xpath('./@root')
+                  td = c.xpath('./@extension')
+                  td = c.xpath('./@identifierName')
+                  td = c.xpath('./@version')
+                  td = file
+
+        h2 Resources
+        table#resources.table.table-sm.table-striped
+          thead
+            tr
+              th Title
+              th Identifiers
+              th Description
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:relatedResources//xmlns:resource').each do |c|
+                tr
+                  td = c.xpath('./xmlns:title/@value')
+                  td 
+                    - c.xpath('.//xmlns:identifier/@extension').collect{|n|n.to_s}.each do |n|
+                      = n
+                      br
+                  td = c.xpath('./xmlns:description/@value').to_s
+                  td = file
+
+        h2 Publishers
+        table#publishers.table.table-sm.table-striped
+          thead
+            tr
+              th Type
+              th Name
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:publishers/xmlns:publisher').each do |n|
+                tr
+                  td = n.xpath('./@xsi:type')
+                  td = n.xpath('./xmlns:name/@value')
+                  td = file
+
+        h2 Contributors
+        table#contributors.table.table-sm.table-striped
+          thead
+            tr
+              th Given
+              th Family
+              th Title
+              th Affiliation
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:contributions//xmlns:contributor').each do |c|
+                tr
+                  td = c.xpath('./xmlns:name/dt:part[@type="GIV"]/@value')
+                  td = c.xpath('./xmlns:name/dt:part[@type="FAM"]/@value')
+                  td
+                    - c.xpath('./xmlns:name/dt:part[@type="TITLE"]/@value').collect{|n|n.to_s}.each do |n|
+                      = n
+                      br
+                  td = c.xpath('./xmlns:affiliation/xmlns:name/@value')
+                  td = file
+
+        h2 Supporting Evidence
+        table#supportingEvidence.table.table-sm.table-striped
+          thead
+            tr
+              th Title
+              th Identifiers
+              th Description
+              th Location
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:metadata/xmlns:supportingEvidence//xmlns:resource').each do |n|
+                tr
+                  td = n.xpath('./xmlns:title/@value')
+                  td
+                    - n.xpath('.//xmlns:identifier/@extension').collect{|n|n.to_s}.each do |n|
+                      = n
+                      br
+                  td = n.xpath('./xmlns:description/@value')
+                  td = n.xpath('./xmlns:location/@value')
+                  td = file
+
+
+        h2 Event History
+        table#eventHistory.table.table-sm.table-striped
+          thead
+            tr
+              th Type
+              th Date/Time
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:eventHistory/xmlns:artifactLifeCycleEvent').each do |n|
+                tr
+                  td = n.xpath('./xmlns:eventType/@value')
+                  td = n.xpath('./xmlns:eventDateTime/@value')
+                  td = file
+
+        h2 Applicability
+        table#applicability.table.table-sm.table-striped
+          thead
+            tr
+              th Focus
+              th Description
+              th Code
+              th System
+              th File
+          tbody
+            - knarts.each do |file, result|
+              - result[:doc].xpath('//xmlns:applicability/xmlns:coverage').each do |n|
+                tr
+                  td = n.xpath('./xmlns:focus/@value')
+                  td = n.xpath('./xmlns:description/@value')
+                  td = n.xpath('./xmlns:value/@code')
+                  td = n.xpath('./xmlns:value/@codeSystem')
+                  td = file
+

data/lib/views/action_group.slim

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+.action_group
+	- title = node.xpath('./knart:title', knart: 'urn:hl7-org:knowledgeartifact:r1').first['value']
+	- case self.level
+	- when 0
+		h1.title = title
+	- when 1
+		h2.title = title
+	- when 2
+		h3.title = title
+	- when 3
+		h4.title = title
+	- when 4
+		h5.title = title
+	- else
+		p.title = title
+	/ span.glyphicon.glyphicon-align-justify
+	/ = knart.dummy_drag_control
+	- node.xpath('./knart:subElements/knart:simpleAction', knart: 'urn:hl7-org:knowledgeartifact:r1').each do |sa|
+		- sa.xpath('./knart:documentationConcept', knart: 'urn:hl7-org:knowledgeartifact:r1').each do |dc|
+			- sa.xpath('./knart:documentationConcept', knart: 'urn:hl7-org:knowledgeartifact:r1').each do |dc|
+				.row
+					.col-md-5
+						.form-group
+							label = dc.xpath('./knart:prompt', knart: 'urn:hl7-org:knowledgeartifact:r1').first['value']
+							- dataType = dc.xpath('./knart:responseDataType', knart: 'urn:hl7-org:knowledgeartifact:r1').first['value']
+							- cardinality = dc.xpath('./knart:responseCardinality', knart: 'urn:hl7-org:knowledgeartifact:r1').first['value']
+							- enumeration = dc.xpath('./knart:responseRange[@xsi:type="EnumerationConstraint"]', knart: 'urn:hl7-org:knowledgeartifact:r1', xsi: 'http://www.w3.org/2001/XMLSchema-instance').length > 0
+							- other = dc.xpath('./knart:responseRange[strictSelection="false"]', knart: 'urn:hl7-org:knowledgeartifact:r1').length > 0
+							/ - if cardinality == "Single" && enumeration
+							select
+								- dc.xpath('./knart:responseRange/knart:item', knart: 'urn:hl7-org:knowledgeartifact:r1').each do |item|
+									- value = item.xpath('./knart:value', knart: 'urn:hl7-org:knowledgeartifact:r1').first
+									option value="#{value['value']}" #{value['value']}
+									- if other
+										option value="other" Other (Please Specify)
+							- if other
+								input type="text" class="form-control input-lg"
+					.col-md-7
+						= knart.dummy_add_button
+						- itemCodes = dc.xpath('./knart:itemCodes/knart:itemCode', knart: 'urn:hl7-org:knowledgeartifact:r1')
+						h4 Item Codes
+						table.table.table-condensed.table-striped
+							thead
+								tr
+									th Code
+									th System
+							tbody
+								- itemCodes.each do |itemCode|
+									tr
+										td = itemCode['code']
+										td = itemCode['codeSystem']
+
+						= knart.dummy_add_button
+						- items = dc.xpath('./knart:responseRange[@xsi:type="EnumerationConstraint"]/knart:item', knart: 'urn:hl7-org:knowledgeartifact:r1', xsi: 'http://www.w3.org/2001/XMLSchema-instance')
+						h4 Responses
+						table.table.table-condensed.table-striped
+							thead
+								tr
+									th Display
+									th Type
+									th Value
+									th Codes
+									th Actions
+							tbody
+								- items.each do |item|
+									tr
+										- value = item.xpath('./knart:value', knart: 'urn:hl7-org:knowledgeartifact:r1').first
+										td = value['value']
+										td = value['xsi:type']
+										td = value['valueType']
+										td
+											- codes = item.xpath('./knart:codes/knart:code', knart: 'urn:hl7-org:knowledgeartifact:r1')
+											- if codes.length > 0
+												ul
+													- codes.each do |code|
+														li
+															a href="http://www.snomedbrowser.com/Codes/Details/#{code['code']}" = code['code']
+															br
+															small #{code['codeSystemName']} (#{code['codeSystem']})
+										td = knart.dummy_edit_and_delete
+						/ node..xpath('//knart:knowledgeDocument/knart:metadata/knart:applicability/knart:coverage', knart: 'urn:hl7-org:knowledgeartifact:r1').each do 
+						
+
+	/ Child recursion
+	- node.xpath('./knart:subElements/knart:actionGroup', knart: 'urn:hl7-org:knowledgeartifact:r1').each do |ag|
+		- child = Knartform::ActionGroup.new(self.level + 1)
+		- child.knart = self.knart
+		- child.document = document
+		- child.node = ag
+		= child.to_html