join_count_files 0.2.0

checksums.yaml

@@ -0,0 +1,7 @@
+---
+SHA256:
+  metadata.gz: 70cd5605437dea753ba0883494a083e52b4fadd0944b824ad9ec98e8c32d6bbd
+  data.tar.gz: 58e1df54960004daa3226d477b689e8a443383ab520c02302012fc6665a0c6e5
+SHA512:
+  metadata.gz: 357aef087b26c874d099ee9af88180490d3641e51e4b4cdc09270b448305982a1d567a1a2dd4ae6086e65e542c98810bb3c63cfa6d146949f9fca57b4d08ff5f
+  data.tar.gz: 79b2d63ca3b5431cb14c4eaab518f83a0edd8dc58b5ddf4608156f352f36fbe14f8c45a71d21302842bb3b1afe5d31cf5f0d1ad5febff1b0c1cc3f7e01ec3e3d

data/lib/join_count_files.rb

@@ -0,0 +1,86 @@
+#  JOIN COUNTS FROM MULTIPLE FILES (JOINCOUNTFILES)
+
+##############################################################
+# MIT License
+
+# Copyright (c) [2020] [ZACHARY L. DWIGHT]
+
+# Permission is hereby granted, free of charge, to any person obtaining a copy
+# of this software and associated documentation files (the "Software"), to deal
+# in the Software without restriction, including without limitation the rights
+# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+# copies of the Software, and to permit persons to whom the Software is
+# furnished to do so, subject to the following conditions:
+
+# The above copyright notice and this permission notice shall be included in all
+# copies or substantial portions of the Software.
+
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+# SOFTWARE.
+##############################################################
+#
+#
+# Use for merging comma delimited files of sums or totals
+# First column is unique ID or name or label
+# Second column is number
+
+# Example...
+# Sem1-Points.txt
+# Jack, 56
+# Jill, 100
+
+# Sem2-Points.txt
+# Jack, 80
+# Jill, 99
+
+# puts JOINCOUNTFILES::MergeCounts.buildfile('Sem1-Points.txt','Sem2-Points.txt','asc','MergedFile.txt')
+
+# MergedFile.txt
+# Jack, 136
+# Jill, 199
+
+module JOINCOUNTFILES
+class MergeCounts
+	def self.buildfile(majorFile,minorFile,sort,outputfile)
+	
+		mers1 = Hash.new()
+		mers2 = Hash.new()
+		comboHash = Hash.new()
+		
+		 File.foreach(majorFile) {|x| 
+			xarr = x.split(",")
+			mers1.store(xarr[0],xarr[1].to_i)
+			}
+		
+		 File.foreach(minorFile) {|y| 
+			yarr = y.split(",")
+			mers2.store(yarr[0],yarr[1].to_i)
+			}
+			
+		comboHash = mers1.merge(mers2){|key, oldval, newval| newval + oldval}
+		
+		if(sort == 'asc')
+		open(outputfile, 'w') { |f|
+			comboHash.sort{|a,b| a[1]<=>b[1]}.each { |elem|
+			f.puts "#{elem[0]},#{elem[1]}"
+				}
+			}
+		end
+		if(sort == 'desc')
+		open(outputfile, 'w') { |f|
+			comboHash.sort{|a,b| b[1]<=>a[1]}.each { |elem|
+			f.puts "#{elem[0]},#{elem[1]}"
+				}
+			}
+		end
+	return 0
+	end
+
+end
+end
+

metadata

@@ -0,0 +1,50 @@
+--- !ruby/object:Gem::Specification
+name: join_count_files
+version: !ruby/object:Gem::Version
+  version: 0.2.0
+platform: ruby
+authors:
+- Zachary L. Dwight
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2020-11-11 00:00:00.000000000 Z
+dependencies: []
+description: A Ruby Gem used for consolidating files with a unique identifier (such
+  as genetic sequence) and their associated value, count, or sum in asc or desc order.  We've
+  used it for sequencing and genomic searches for assay development in molecular diagnostics
+  to consolidate distributed processes and pipelines.  Also helpful for bioinformatics
+  and NLP applications to summarize occurences of frequency.
+email: zach.dwight@path.utah.edu
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- lib/join_count_files.rb
+homepage: https://dna-utah.org
+licenses:
+- MIT
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ">="
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.7.6
+signing_key: 
+specification_version: 4
+summary: Join two files with unique counts into a single file with sum by ascending
+  or descending order.  Primarily used for genomic sequencing & searches, bioinformatics,
+  and NLP pipelines to quickly consolidate files.
+test_files: []