isi 1.2.2 → 1.2.3
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- data/README +10 -3
- data/Rakefile +2 -2
- data/index.en.html +346 -0
- data/index.ja.html +10 -10
- data/lib/isi.rb +10 -4
- metadata +4 -4
data/README
CHANGED
@@ -5,7 +5,7 @@
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"isi2html" generates a list of articles in an HTML file.
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The package also includes "isi2kakenhi" and "isi2tohoku".
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-
(
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(Thomson Reuters Web of Science http://webofknowledge.com provides their bibliographic
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information in ISI Export Format. You can get the tagged Marked List in
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Web of Science by clicking the [SAVE TO FILE] button.)
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@@ -187,10 +187,17 @@ http://images.webofknowledge.com/WOKRS52B10/help/ja/WOS/hs_wos_fieldtags.html
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* none.
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== TODO
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-
* lib/isi.rb combine
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-
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* In lib/isi.rb, combine
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ISI_record#and_separated_authors() and
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ISI_record#comma_and_separated_authors() into
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ISI_record#separated_authors().
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* Write papers, not tools for writing papers.
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* tests/isi_test.rb
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* Move output formats from lib/isi.rb to isi2html, isi2tohoku and isi2kakenhi.
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Leave that for isi2bibtex in lib/isi.rb.
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* We do not need journaltitleabbreviation.rb any more.
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* Daemon for Linux. Automatic ~/Desktop/savedrecs.txt -> savedrecs.bib
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using inotify().
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# Local variables:
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# mode: RD
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data/Rakefile
CHANGED
@@ -1,6 +1,6 @@
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#! /usr/bin/env rake
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# -*-Ruby-*-
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-
# Time-stamp: <
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# Time-stamp: <2011-07-21 17:20:12 takeshi>
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# Author: Takeshi Nishimatsu
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##
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$LOAD_PATH.unshift('lib')
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@@ -49,7 +49,7 @@ task :package => [ :isi_version_rb, "index.en.html" ]
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desc "Create index.en.html"
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file "index.en.html" => ["style.css", "README"] do |t|
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-
sh "
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sh "ulmul2html5 -m 1 -s #{t.prerequisites[0]} #{t.prerequisites[1]} | sed -e 's%</h1>%</h1><div class=\"navi\">[<a href=\"index.en.html\">English</a>/<a href=\"index.ja.html\">Japanese</a>]</div>%' > #{t.name}"
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end
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desc "Copy lib/isi.rb ../isi-X.Y.Z.rb"
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data/index.en.html
CHANGED
@@ -0,0 +1,346 @@
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<!DOCTYPE html>
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<html lang="en">
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<head>
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<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
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<title>isi = Ruby Scripts and Libraries for ISI Export Format</title>
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<meta name="author" content="takeshi" />
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<meta name="copyright" content="Copyright © 2011 takeshi" />
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<script type="text/x-mathjax-config">
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MathJax.Hub.Config({
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tex2jax: {
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inlineMath: [ ['$','$'] ]
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}
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});
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</script>
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<link rel="stylesheet" href="style.css" type="text/css" />
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<link rel="shortcut icon" href="favicon.ico" />
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</head>
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<body onload="prettyPrint()">
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<div class="slide cover">
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<h1 id="LABEL-1">isi = Ruby Scripts and Libraries for ISI Export Format</h1><div class="navi">[<a href="index.en.html">English</a>/<a href="index.ja.html">Japanese</a>]</div>
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<!-- Contents -->
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</div>
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<div class="slide">
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<h2 id="LABEL-2">What is isi?</h2>
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<p>
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"isi" is a package of Ruby libraries and scripts for ISI Export Format.
|
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"isi2bibtex" converts ISI Export Format to BibTeX Format.
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"isi2html" generates a list of articles in an HTML file.
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The package also includes "isi2kakenhi" and "isi2tohoku".
|
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</p>
|
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<p>
|
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(Thomson Reuters Web of Science <a href="http://webofknowledge.com">http://webofknowledge.com</a> provides their bibliographic
|
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information in ISI Export Format. You can get the tagged Marked List in
|
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Web of Science by clicking the [SAVE TO FILE] button.)
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</p>
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</div>
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<div class="slide">
|
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<h2 id="LABEL-3">Where is the homepage of isi?</h2>
|
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<p>
|
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<a href="http://isi-rb.rubyforge.org/">http://isi-rb.rubyforge.org/</a>
|
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</p>
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</div>
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|
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<div class="slide">
|
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<h2 id="LABEL-4">Where can I download isi?</h2>
|
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<p>
|
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Go to <a href="http://rubyforge.org/projects/isi-rb">http://rubyforge.org/projects/isi-rb</a> or <a href="http://rubygems.org/gems/isi">http://rubygems.org/gems/isi</a> .
|
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</p>
|
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</div>
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|
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<div class="slide">
|
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<h2 id="LABEL-5">How can I install isi?</h2>
|
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<p>
|
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There are three different ways to install isi.
|
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</p>
|
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<h3 id="LABEL-6">I. Conservative way; use setup.rb</h3>
|
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<p>
|
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isi-X.Y.Z.tgz package can be installed as:
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</p>
|
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<pre>
|
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$ tar zxf isi-X.Y.Z.tgz
|
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$ cd isi-X.Y.Z
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$ su
|
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# ruby setup.rb
|
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</pre>
|
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<p>
|
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Note that the text-format and text-hyphen libraries <a href="http://rubyforge.org/projects/text-format">http://rubyforge.org/projects/text-format</a> is required.
|
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</p>
|
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<h3 id="LABEL-7">II. RubyGems users can take an easy way</h3>
|
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<p>
|
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There is an easy way, if you are a RubyGems user:
|
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</p>
|
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<pre>
|
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$ su
|
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# gem install isi
|
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</pre>
|
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<p>
|
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If you do not have the text-format and text-hyphen libraries,
|
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gem will download and install the libraries automatically.
|
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</p>
|
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<h3 id="LABEL-8">III. Simple way; just copy isi.rb and journaltitleabbreviation.rb</h3>
|
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<p>
|
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Just copy lib/isi.rb (isi-X.Y.Z.rb) and
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lib/journaltitleabbreviation.rb (journaltitleabbreviation-X.Y.Z.rb)
|
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into your working directory which contains your saved "Marked List",
|
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e.g. savedrecs.txt.
|
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</p>
|
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<pre>
|
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$ cp lib/isi.rb lib/journaltitleabbreviation.rb ~/your/working/directory/
|
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($ cp isi-X.Y.Z.rb ~/your/working/directory/isi.rb)
|
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$ cp lib/journaltitleabbreviation.rb ~/your/working/directory/
|
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($ cp journaltitleabbreviation-X.Y.Z.rb ~/your/working/directory/journaltitleabbreviation.rb)
|
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$ cd ~/your/working/directory/
|
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$ ruby isi.rb savedrecs1.txt savedrecs2.txt
|
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$ ruby isi.rb < savedrecs.txt > savedrecs.bib
|
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</pre>
|
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<p>
|
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Last two lines are examples of usage for this installation way.
|
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</p>
|
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<p>
|
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Note that the text-format and text-hyphen libraries <a href="http://rubyforge.org/projects/text-format">http://rubyforge.org/projects/text-format</a> is required.
|
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</p>
|
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</div>
|
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|
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|
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<div class="slide">
|
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<h2 id="LABEL-9">How can I use it?</h2>
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<h3 id="LABEL-10">Save the marked records to an output file in ISI Web of Science</h3>
|
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<p>
|
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Mark the articles in ISI Web of Science. Then, view and save the
|
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marked records to an output file (savedrecs.txt). I recommend to
|
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check "Author(s)", "Title", "Source", "abstract*", "keywords",
|
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"times cited" and "source abbreviation" as the fields to include
|
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in the output file.
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</p>
|
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<h3 id="LABEL-11">Here are some examples</h3>
|
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<pre>
|
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$ isi2bibtex savedrecs.txt
|
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$ isi2bibtex savedrecs1.txt savedrecs2.txt > savedrecs.bib
|
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$ isi2bibtex < savedrecs.txt > savedrecs.bib
|
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$ cat savedrecs.txt | isi2bibtex > savedrecs.bib
|
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</pre>
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<h3 id="LABEL-12">Some other useful executables</h3>
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<p>
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For KakenhiLaTeX <a href="http://osksn2.hep.sci.osaka-u.ac.jp/~taku/kakenhiLaTeX/">http://osksn2.hep.sci.osaka-u.ac.jp/~taku/kakenhiLaTeX/</a>
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</p>
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<pre>
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$ isi2kakenhi --help
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$ isi2kakenhi --name-regexp='(H\. Yukawa|Hideki Yukawa)' savedrecs.txt > papers.tex
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</pre>
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<p>
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For the database of "Academic Research Staff at Tohoku University" <a href="http://db.tohoku.ac.jp/whois/TunvTopE.html">http://db.tohoku.ac.jp/whois/TunvTopE.html</a>
|
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</p>
|
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<pre>
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$ isi2tohoku --help
|
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$ isi2tohoku --id 12345678 --name 'Example Name' savedrecs.txt
|
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</pre>
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<p>
|
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To convert ISI Export Format to HTML
|
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</p>
|
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<pre>
|
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$ isi2html --help
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$ isi2html --full-name='Hideki Yukawa' --name-regexp='(H\. Yukawa|Hideki Yukawa)' savedrecs.txt > index.html
|
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</pre>
|
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<h3 id="LABEL-13">You can use isi as a library.</h3>
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<p>
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Here is an example:
|
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</p>
|
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<pre>
|
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#!/usr/bin/env ruby
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##
|
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require 'rubygems' # You may not need this line.
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require 'isi'
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|
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class ISI_record
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def to_title_author
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"#{@hash['TI']} - #{and_separated_authors}\n"
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end
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end
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|
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while rec = ARGF.read_an_ISI_record
|
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print rec.to_title_author
|
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end
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</pre>
|
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</div>
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<div class="slide">
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<h2 id="LABEL-14">Copying</h2>
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<p>
|
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isi is distributed in the hope that
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it will be useful, but WITHOUT ANY WARRANTY.
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You can copy, modify and redistribute isi,
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but only under the conditions described in
|
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the GNU General Public License (the "GPL").
|
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For more detail, see COPYING.
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</p>
|
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</div>
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|
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<div class="slide">
|
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<h2 id="LABEL-15">Thanks to contributor(s)!</h2>
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<p>
|
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* Marcin Dulak
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</p>
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</div>
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<div class="slide">
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<h2 id="LABEL-16">Who is the author?</h2>
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<p>
|
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NISHIMATSU Takeshi t-nissie{at}imr.tohoku.ac.jp
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</p>
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</div>
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+
|
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|
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<div class="slide">
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<h2 id="LABEL-17">Why did he write it?</h2>
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<p>
|
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Because he do not like the output format of the Perl version.
|
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</p>
|
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</div>
|
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+
|
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|
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<div class="slide">
|
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<h2 id="LABEL-18">Is there a Perl version?</h2>
|
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<p>
|
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Yes.
|
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You can find the Perl version by Jonathan Swinton, Ben Bolker, Anthony Stone, John J. Lee
|
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in CTAN <a href="http://www.ctan.org/tex-archive/biblio/bibtex/utils/isi2bibtex">http://www.ctan.org/tex-archive/biblio/bibtex/utils/isi2bibtex</a> .
|
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</p>
|
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</div>
|
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+
|
220
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+
|
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<div class="slide">
|
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<h2 id="LABEL-19">I do not like the output format of isi2bibtex, neither!</h2>
|
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<p>
|
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The output format is defined in the source code WYSIWYGly.
|
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So you can easily change the output format by yourself.
|
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</p>
|
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</div>
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+
|
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+
|
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<div class="slide">
|
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<h2 id="LABEL-20">How can I get the latest source tree of isi?</h2>
|
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<p>
|
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You can checkout the latest source tree of isi anonymously from
|
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RubyForge with svn(1) command:
|
235
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</p>
|
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+
<pre>
|
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+
$ svn checkout svn://rubyforge.org/var/svn/isi-rb/isi
|
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</pre>
|
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</div>
|
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+
|
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|
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<div class="slide">
|
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<h2 id="LABEL-21">Meanings of tags in ISI Export Format</h2>
|
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<h3 id="LABEL-22">file-unique tags</h3>
|
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<pre>
|
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FN: File type. The file starts with 'FN ISI Export Format' or 'FN Thomson Reuters Web of Knowledge'
|
247
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+
VR: Version number of ISI export file format
|
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+
EF: End of file
|
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+
</pre>
|
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<h3 id="LABEL-23">normal tags</h3>
|
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<pre>
|
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AB: Abstract
|
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AF: Authors Full (AU Foo, BAR -> AF Foo, B. A. R.; AU Nishimatsu, T -> AF Nishimatsu Takeshi)
|
254
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+
AP: Article number of new APS journals (in ISI Web of Knowledge, 2008-)
|
255
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+
AR: Article number of new APS journals
|
256
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+
AU: Authors
|
257
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+
BE: Editors of Proceedings ???
|
258
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+
BN: ISBN
|
259
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+
BP: Beginning page
|
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+
C1: Research addresses
|
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CA: Group authors
|
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CL: Conference location
|
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CR: Cited references
|
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CT: Conference title
|
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CY: Conference Date
|
266
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DE: Original keywords
|
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DI: DOI
|
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DT: Document type
|
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ED: Editors
|
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EM: E-mail address
|
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EP: Ending page
|
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ER: end of a record
|
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FN: File name
|
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FU: Funding agency and grant number
|
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FX: Funding text
|
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GA: IDS number (ISI original)
|
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HO: Conference host
|
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ID: New keywords given by ISI
|
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IS: issue
|
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J9: 29-character journal title abbreviation
|
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JI: ISO journal title abbreviation
|
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+
LA: Language
|
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NR: Cited reference count
|
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PD: Publication date e.g. "JUN 8" or "JUL"
|
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PA: Publisher Address
|
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PG: the number of pages
|
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+
PI: Publisher city
|
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PN: Part number
|
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PT: Publication type (e.g., book, journal, book in series)
|
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PU: Publisher
|
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PY: Publication year
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RID: Researcher ID
|
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RP: Reprint address
|
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SE: Book series title
|
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SI: Special issue
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|
+
SN: ISSN
|
297
|
+
SO: journal title, in full
|
298
|
+
SP: Conference Sponsors
|
299
|
+
SU: Supplement
|
300
|
+
TC: Times cited
|
301
|
+
TI: Title
|
302
|
+
UT: ISI unique article identifier
|
303
|
+
VL: Volume
|
304
|
+
WC: Research field
|
305
|
+
WP: Publisher web address
|
306
|
+
Z9: Total times cited ???
|
307
|
+
</pre>
|
308
|
+
<h3 id="LABEL-24">isi original tags</h3>
|
309
|
+
<pre>
|
310
|
+
UR: URL
|
311
|
+
</pre>
|
312
|
+
<h3 id="LABEL-25">See also</h3>
|
313
|
+
<p>
|
314
|
+
<a href="http://images.webofknowledge.com/WOKRS52B10/help/ja/WOS/hs_wos_fieldtags.html">http://images.webofknowledge.com/WOKRS52B10/help/ja/WOS/hs_wos_fieldtags.html</a>
|
315
|
+
</p>
|
316
|
+
</div>
|
317
|
+
|
318
|
+
|
319
|
+
<div class="slide">
|
320
|
+
<h2 id="LABEL-26">Known bugs</h2>
|
321
|
+
|
322
|
+
<ul>
|
323
|
+
<li>none.</li>
|
324
|
+
</ul>
|
325
|
+
</div>
|
326
|
+
|
327
|
+
|
328
|
+
<div class="slide">
|
329
|
+
<h2 id="LABEL-27">TODO</h2>
|
330
|
+
|
331
|
+
<ul>
|
332
|
+
<li>In lib/isi.rb, combine
|
333
|
+
ISI_record#and_separated_authors() and
|
334
|
+
ISI_record#comma_and_separated_authors() into
|
335
|
+
ISI_record#separated_authors().</li>
|
336
|
+
<li>Write papers, not tools for writing papers.</li>
|
337
|
+
<li>tests/isi_test.rb</li>
|
338
|
+
<li>Move output formats from lib/isi.rb to isi2html, isi2tohoku and isi2kakenhi.
|
339
|
+
Leave that for isi2bibtex in lib/isi.rb.</li>
|
340
|
+
<li>We do not need journaltitleabbreviation.rb any more.</li>
|
341
|
+
<li>Daemon for Linux. Automatic ~/Desktop/savedrecs.txt -> savedrecs.bib
|
342
|
+
using inotify().</li>
|
343
|
+
</ul>
|
344
|
+
</div>
|
345
|
+
</body>
|
346
|
+
</html>
|
data/index.ja.html
CHANGED
@@ -15,7 +15,7 @@
|
|
15
15
|
</div>
|
16
16
|
|
17
17
|
<p>
|
18
|
-
「isi」はISI
|
18
|
+
「isi」はISI社(現トムソン・ロイター)の巨大な学術論文データベース
|
19
19
|
<a href="http://www.isiknowledge.com/">Web of Science</a>
|
20
20
|
のタグのついた出力ファイル(ISI形式)
|
21
21
|
をBibTeX形式やHTMLなどに変換するRubyスクリプトとライブラリのパッケージです.
|
@@ -82,25 +82,25 @@ gem install isi -p http://proxy.example.com:8080
|
|
82
82
|
|
83
83
|
|
84
84
|
<p>
|
85
|
-
★ 変換したいISI形式のファイルを用意します. ここでは
|
86
|
-
なお,<a href="http://www.isiknowledge.com/">Web of Science</a>でセーブのときに
|
87
|
-
|
85
|
+
★ 変換したいISI形式のファイルを用意します. ここではsavedrecs.txtとします.
|
86
|
+
なお,<a href="http://www.isiknowledge.com/">Web of Science</a>でセーブのときに
|
87
|
+
「ジャーナル省略形」や「抄録」にもチェックを付けておくとよいでしょう.
|
88
88
|
</p>
|
89
89
|
|
90
90
|
<p>
|
91
|
-
・
|
91
|
+
・ savedrecs.txtをBibTeX形式のfoo.bibに変換する方法:
|
92
92
|
</p>
|
93
93
|
|
94
94
|
<pre>
|
95
|
-
isi2bibtex
|
95
|
+
isi2bibtex savedrecs.txt > foo.bib
|
96
96
|
</pre>
|
97
97
|
|
98
98
|
<p>
|
99
|
-
・
|
99
|
+
・savedrecs.txtを「論文一括登録ファイル」形式のfoo.xlcに変換したいなら:
|
100
100
|
</p>
|
101
101
|
|
102
102
|
<pre>
|
103
|
-
isi2tohoku --id 12345678 --name 'Example Name'
|
103
|
+
isi2tohoku --id 12345678 --name 'Example Name' savedrecs.txt > foo.xlc
|
104
104
|
</pre>
|
105
105
|
|
106
106
|
<p>
|
@@ -116,12 +116,12 @@ isi2tohoku --help
|
|
116
116
|
</p>
|
117
117
|
|
118
118
|
<p>
|
119
|
-
・
|
119
|
+
・savedrecs.txtをHTML形式のfoo.htmlに変換したいなら:
|
120
120
|
</p>
|
121
121
|
|
122
122
|
<pre>
|
123
123
|
isi2html --help
|
124
|
-
isi2html --name-regexp='(H\. Yukawa|Hideki Yukawa)' --full-name='Hideki Yukawa'
|
124
|
+
isi2html --name-regexp='(H\. Yukawa|Hideki Yukawa)' --full-name='Hideki Yukawa' savedrecs.txt > foo.html
|
125
125
|
</pre>
|
126
126
|
|
127
127
|
<p>
|
data/lib/isi.rb
CHANGED
@@ -1,11 +1,17 @@
|
|
1
1
|
#!/usr/bin/env ruby
|
2
|
-
# Time-stamp: <2011-07-
|
2
|
+
# Time-stamp: <2011-07-21 17:09:44 takeshi>
|
3
3
|
# Author: Takeshi Nishimatsu
|
4
4
|
# Project homepage: http://isi-rb.rubyforge.org/
|
5
5
|
# Usage: ruby isi.rb savedrecs.txt > savedrecs.bib
|
6
6
|
##
|
7
|
-
ISI_RB_VERSION = '1.2.
|
7
|
+
ISI_RB_VERSION = '1.2.3'
|
8
8
|
require 'text/format' # http://rubyforge.org/projects/text-format/
|
9
|
+
|
10
|
+
# For m17n of Ruby 1.9.x. Thanks, Masayoshi Takahashi-san [ruby-list:47159].
|
11
|
+
if defined?(Encoding) && Encoding.respond_to?("default_external")
|
12
|
+
Encoding.default_external = "UTF-8"
|
13
|
+
end
|
14
|
+
|
9
15
|
class ISI_record
|
10
16
|
public
|
11
17
|
@@order = 0
|
@@ -212,7 +218,7 @@ def ARGF.read_an_ISI_record
|
|
212
218
|
while line = gets
|
213
219
|
#===== a few special cases
|
214
220
|
return ISI_record.new(hash) if line =~ /^ER/
|
215
|
-
next if line =~ /^(EF|FN
|
221
|
+
next if line =~ /^(EF|FN|.FN|...FN|VR)/ # ignore file-unique tags
|
216
222
|
next if line =~ /^\s*$/ # ignore blank lines
|
217
223
|
while line =~ /\!$/
|
218
224
|
line.chomp!.chop! # continued to next line if the line ends with "!"
|
@@ -236,7 +242,7 @@ def ARGF.read_an_ISI_record
|
|
236
242
|
else
|
237
243
|
hash[$1] = $2
|
238
244
|
end
|
239
|
-
when /^(AB|AP|AR|BN|BP|C1|CA|CL|CT|CY|DE|DI|DT|ED|EM|EP|
|
245
|
+
when /^(AB|AP|AR|BN|BP|C1|CA|CL|CT|CY|DE|DI|DT|ED|EM|EP|FU|FX|GA|HO|ID|IS|J9|JI|LA|PA|PD|PI|PN|PT|PU|RP|SC|SE|SI|SN|SO|SP|SU|TI|UT|VL|WC) (.*)$/
|
240
246
|
tag = $1
|
241
247
|
str = $2
|
242
248
|
while (line = gets) =~ /^ /
|
metadata
CHANGED
@@ -1,13 +1,13 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: isi
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
4
|
+
hash: 25
|
5
5
|
prerelease:
|
6
6
|
segments:
|
7
7
|
- 1
|
8
8
|
- 2
|
9
|
-
-
|
10
|
-
version: 1.2.
|
9
|
+
- 3
|
10
|
+
version: 1.2.3
|
11
11
|
platform: ruby
|
12
12
|
authors:
|
13
13
|
- Takeshi Nishimatsu
|
@@ -15,7 +15,7 @@ autorequire: lib/isi.rb
|
|
15
15
|
bindir: bin
|
16
16
|
cert_chain: []
|
17
17
|
|
18
|
-
date: 2011-07-
|
18
|
+
date: 2011-07-21 00:00:00 +09:00
|
19
19
|
default_executable: isi2bibtex
|
20
20
|
dependencies:
|
21
21
|
- !ruby/object:Gem::Dependency
|