iqvoc 4.7.0 → 4.8.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +16 -0
- data/Gemfile +11 -11
- data/Gemfile.lock +178 -122
- data/README.md +39 -24
- data/{test/performance/browsing_test.rb → app/aides/inline_data_helper.rb} +23 -6
- data/app/aides/maker.rb +139 -0
- data/{lib → app/aides}/multi_logger.rb +0 -0
- data/app/aides/origin.rb +47 -0
- data/app/aides/rdfapi.rb +59 -0
- data/app/aides/skos_exporter.rb +151 -0
- data/app/aides/skos_importer.rb +348 -0
- data/app/assets/javascripts/iqvoc/entityselect.js.erb +7 -9
- data/app/controllers/application_controller.rb +1 -3
- data/app/controllers/collections/versions_controller.rb +1 -3
- data/app/controllers/concepts/versions_controller.rb +9 -3
- data/app/controllers/concerns/controller_extensions.rb +109 -0
- data/app/{concerns → controllers/concerns}/reverse_match_errors.rb +0 -0
- data/app/controllers/hierarchy_controller.rb +7 -3
- data/app/controllers/instance_configuration_controller.rb +1 -1
- data/app/controllers/pages_controller.rb +10 -0
- data/app/controllers/search_results_controller.rb +2 -2
- data/app/controllers/triplestore_sync_controller.rb +2 -4
- data/app/helpers/application_helper.rb +1 -1
- data/app/helpers/widget_helper.rb +3 -3
- data/app/jobs/export_job.rb +1 -3
- data/app/jobs/import_job.rb +1 -3
- data/app/models/ability.rb +59 -0
- data/app/models/abstract_user.rb +1 -1
- data/app/models/collection/base.rb +12 -3
- data/app/models/collection/member/skos/base.rb +1 -1
- data/app/models/concept/base.rb +15 -8
- data/app/models/concept/relation/base.rb +1 -1
- data/app/models/concept/relation/skos/base.rb +1 -1
- data/app/models/concept/skos/scheme.rb +1 -1
- data/app/models/concept/validations.rb +1 -1
- data/app/models/concerns/deep_cloning.rb +92 -0
- data/app/models/concerns/first_level_object_scopes.rb +9 -0
- data/app/{concerns → models/concerns}/first_level_object_validations.rb +9 -2
- data/app/models/concerns/rankable.rb +31 -0
- data/app/models/{search_extension.rb → concerns/search_extension.rb} +0 -0
- data/app/{concerns → models/concerns}/versioning.rb +0 -6
- data/app/models/configuration_setting.rb +1 -1
- data/app/models/labeling/skos/base.rb +2 -2
- data/app/models/match/skos/base.rb +2 -2
- data/app/models/note/skos/base.rb +7 -6
- data/app/models/note/skos/change_note.rb +1 -1
- data/{lib/iqvoc/rdf_sync.rb → app/services/rdf_sync_service.rb} +3 -3
- data/app/view_models/concept_view.rb +1 -1
- data/app/views/collections/_form.html.erb +2 -2
- data/app/views/concepts/scheme/edit.html.erb +1 -1
- data/app/views/pages/components.html.erb +45 -0
- data/app/views/pages/version.html.erb +6 -0
- data/app/views/partials/concept/_reverse_match_notice.html.erb +0 -1
- data/app/views/search_results/_sidebar.html.erb +3 -3
- data/config/application.rb +4 -1
- data/config/boot.rb +1 -2
- data/config/database.yml.postgresql +23 -0
- data/config/engine.rb +0 -2
- data/config/environments/heroku.rb +1 -1
- data/config/initializers/inflections.rb +9 -3
- data/config/initializers/iqvoc.rb +1 -7
- data/config/initializers/mime_types.rb +0 -1
- data/config/locales/de.yml +2 -1
- data/config/locales/en.yml +11 -10
- data/config/routes.rb +2 -0
- data/config/travis/database.yml.mysql +9 -0
- data/config/travis/database.yml.postgresql +7 -0
- data/config/travis/database.yml.sqlite +5 -0
- data/db/migrate/20141204151558_add_foreign_key_constraints.rb +23 -0
- data/iqvoc.gemspec +2 -2
- data/lib/generators/app/template.rb +15 -7
- data/lib/iqvoc.rb +2 -1
- data/lib/iqvoc/configuration/core.rb +18 -4
- data/lib/iqvoc/configuration/instance_configuration.rb +125 -0
- data/lib/iqvoc/configuration/navigation.rb +63 -0
- data/lib/iqvoc/environments/development.rb +4 -0
- data/lib/iqvoc/environments/production.rb +11 -12
- data/lib/iqvoc/environments/test.rb +4 -1
- data/lib/iqvoc/version.rb +2 -2
- data/lib/tasks/exporter.rake +1 -4
- data/lib/tasks/importer.rake +1 -5
- data/lib/tasks/sync.rake +1 -2
- data/test/controllers/concept_movement_test.rb +11 -11
- data/test/controllers/hierarchy_test.rb +83 -79
- data/test/controllers/reverse_match_test.rb +2 -2
- data/test/integration/alphabetical_test.rb +2 -3
- data/test/integration/browse_concepts_and_labels_test.rb +2 -2
- data/test/integration/collection_circularity_test.rb +6 -6
- data/test/integration/concept_scheme_browsing_test.rb +2 -2
- data/test/integration/edit_concepts_test.rb +1 -1
- data/test/integration/export_test.rb +5 -3
- data/test/integration/import_test.rb +4 -1
- data/test/integration/instance_configuration_browsing_test.rb +2 -2
- data/test/integration/navigation_test.rb +2 -2
- data/test/integration/note_annotations_test.rb +12 -11
- data/test/integration/reverse_match_job_test.rb +19 -10
- data/test/integration/search_test.rb +6 -6
- data/test/integration/tree_test.rb +3 -3
- data/test/integration/untranslated_test.rb +1 -1
- data/test/models/concept_test.rb +13 -14
- data/test/models/inline_data_test.rb +9 -9
- data/test/models/instance_configuration_test.rb +7 -3
- data/test/models/origin_test.rb +9 -59
- data/test/models/rdf_sync_test.rb +2 -4
- data/test/models/rdfapi_test.rb +0 -2
- data/test/models/skos_collection_import_test.rb +3 -4
- data/test/models/skos_export_test.rb +3 -5
- data/test/models/skos_import_test.rb +12 -10
- data/test/test_helper.rb +0 -1
- data/vendor/assets/stylesheets/{jquery-ui.css.scss → jquery-ui.scss} +0 -0
- data/vendor/assets/stylesheets/{jquery-ui.structure.css.scss → jquery-ui.structure.scss} +0 -0
- data/vendor/assets/stylesheets/{jquery-ui.theme.css.scss → jquery-ui.theme.scss} +0 -0
- metadata +34 -28
- data/lib/iqvoc/ability.rb +0 -60
- data/lib/iqvoc/controller_extensions.rb +0 -111
- data/lib/iqvoc/deep_cloning.rb +0 -90
- data/lib/iqvoc/inline_data_helper.rb +0 -45
- data/lib/iqvoc/instance_configuration.rb +0 -123
- data/lib/iqvoc/maker.rb +0 -141
- data/lib/iqvoc/navigation.rb +0 -61
- data/lib/iqvoc/origin.rb +0 -111
- data/lib/iqvoc/rankable.rb +0 -33
- data/lib/iqvoc/rdfapi.rb +0 -60
- data/lib/iqvoc/skos_exporter.rb +0 -153
- data/lib/iqvoc/skos_importer.rb +0 -337
data/lib/iqvoc/navigation.rb
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# encoding: UTF-8
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# Copyright 2011-2013 innoQ Deutschland GmbH
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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##
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# Provides a basic API wrapping low-level iQvoc config operations
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# on Iqvoc.navigation_items
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module Iqvoc
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module Navigation
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def self.items
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Iqvoc.navigation_items
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end
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def self.add(item, position = nil)
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if position
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else
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items << item
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end
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end
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def self.add_grouped(item, position = nil)
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index = setup_extension_group(position)
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items[index][:items] << item
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end
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private
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# Setup an empty navigation group for extensions
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# Returns index for the new (or existing) group, so add_grouped
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# can use the index to insert it's item under the group
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def self.setup_extension_group(position)
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group = {
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text: proc { t('txt.views.navigation.extensions') },
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items: []
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}
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if position && !items[position][:items]
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items.insert(position, group)
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elsif position && items[position][:items]
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return position
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else
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items << group
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end
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items.index(group)
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end
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end
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end
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data/lib/iqvoc/origin.rb
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# encoding: UTF-8
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# Copyright 2011-2013 innoQ Deutschland GmbH
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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# Provides utilities to replace special chars etc in
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# texts to generate a valid turtle compatible id (an url slug):
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# Iqvoc::Origin.new("fübar").to_s # => "fuebar"
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#
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# Note that .to_s respects eventually previously executed method chains
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# Just calling "to_s" runs all registered filters.
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# Prepending "to_s" with a specific filter method only runs the given filter:
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# Iqvoc::Origin.new("fübar").replace_umlauts.to_s # => "fuebar"
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#
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# Adding your own filter classes is easy:
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# class FoobarStripper < Iqvoc::Origin::Filters::GenericFilter
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# def call(obj, str)
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# str = str.gsub("foobar", "")
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# run(obj, str)
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# end
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# end
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# Iqvoc::Origin::Filters.register(:strip_foobars, FoobarStripper)
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#
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module Iqvoc
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class Origin
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module Filters
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class GenericFilter
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def call(obj, str)
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# do what has to be done with str
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# afterwards: make sure to pass "obj" and your modified "str" to "run()"
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run(obj, str)
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end
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def run(obj, str)
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obj.tap do |obj|
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obj.value = str
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end
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end
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end
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class UriConformanceFilter < GenericFilter
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def call(obj, str)
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str = str.parameterize # basic url conformance
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# prefix with '_' if origin starts with digit
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str = str.gsub(/^[0-9].*$/) do |match|
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"_#{match}"
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end
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run(obj, str)
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end
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end
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@filters = {}
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@filters[:uri_conformance_filter] = UriConformanceFilter
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@filters[name.to_sym] = klass
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end
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def self.registered
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@filters
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end
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attr_accessor :initial_value, :value, :filters
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def initialize(value)
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self.initial_value = value.to_s
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self.value = initial_value
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end
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def touched?
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value != initial_value
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def run_filters!
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filter_class.new.call(self, value)
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end
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def method_missing(meth, *args)
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Filters.registered[meth.to_sym].new.call(self, value)
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super
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def to_s
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return value if touched?
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run_filters!
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value
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end
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def inspect
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'#<Iqvoc::Origin:0x%08x>' % object_id
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end
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end
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end
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data/lib/iqvoc/rankable.rb
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require 'active_support/concern'
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module Iqvoc
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module Rankable
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extend ActiveSupport::Concern
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def build_rdf(document, subject, suppress_extra_labels = false)
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super
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predicate = "ranked#{rdf_predicate.titleize}"
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subject.Schema.build_predicate(predicate) do |blank_node|
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blank_node.Schema.relationWeight(rank)
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blank_node.Schema.relationTarget(IqRdf.build_uri(target.origin))
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end
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end
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end
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module ClassMethods
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def rankable?
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true
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end
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def partial_name(obj)
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'partials/concept/relation/ranked'
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end
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def edit_partial_name(obj)
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'partials/concept/relation/edit_ranked'
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end
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end
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end
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end
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data/lib/iqvoc/rdfapi.rb
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# encoding: UTF-8
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# Copyright 2011-2013 innoQ Deutschland GmbH
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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module Iqvoc
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module RDFAPI
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FIRST_LEVEL_OBJECT_CLASSES = [Iqvoc::Concept.base_class, Iqvoc::Collection.base_class]
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SECOND_LEVEL_OBJECT_CLASSES = Iqvoc::Concept.labeling_classes.keys +
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Iqvoc::Concept.note_classes +
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Iqvoc::Concept.relation_classes +
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Iqvoc::Concept.match_classes +
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Iqvoc::Concept.notation_classes +
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Iqvoc::Concept.additional_association_classes.keys +
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[Iqvoc::Collection.member_class]
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OBJECT_DICTIONARY = FIRST_LEVEL_OBJECT_CLASSES.inject({}) do |hash, klass|
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hash["#{klass.rdf_namespace}:#{klass.rdf_class}"] = klass
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hash
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end
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PREDICATE_DICTIONARY = SECOND_LEVEL_OBJECT_CLASSES.inject({}) do |hash, klass|
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hash["#{klass.rdf_namespace}:#{klass.rdf_predicate}"] = klass
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hash
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end
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URI_REGEXP = /^https?:\/\/[^\s]+$/
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LITERAL_REGEXP = /^"(.+)"(@(.+))?$/
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def self.devour(rdf_subject, rdf_predicate, rdf_object)
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case rdf_predicate
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when 'a', 'rdf:type'
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case rdf_object
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when String
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target = OBJECT_DICTIONARY[rdf_object] || rdf_object.constantize
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else
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target = rdf_object
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end
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target.find_or_initialize_by(origin: rdf_subject)
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when String
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# dictionary lookup
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target = PREDICATE_DICTIONARY[rdf_predicate] || rdf_predicate.constantize
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target.build_from_rdf(rdf_subject, target, rdf_object)
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else # is a class
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rdf_predicate.build_from_rdf(rdf_subject, rdf_predicate, rdf_object)
|
57
|
-
end
|
58
|
-
end
|
59
|
-
end
|
60
|
-
end
|
data/lib/iqvoc/skos_exporter.rb
DELETED
@@ -1,153 +0,0 @@
|
|
1
|
-
require 'iq_rdf'
|
2
|
-
require 'uri'
|
3
|
-
require 'fileutils'
|
4
|
-
|
5
|
-
module Iqvoc
|
6
|
-
class SkosExporter
|
7
|
-
include RdfHelper # necessary to use render_concept helper
|
8
|
-
include RdfNamespacesHelper
|
9
|
-
include Rails.application.routes.url_helpers
|
10
|
-
|
11
|
-
def initialize(file_path, type, default_namespace_url, logger = Rails.logger)
|
12
|
-
default_url_options[:port] = URI.parse(default_namespace_url).port
|
13
|
-
default_url_options[:host] = URI.parse(default_namespace_url).to_s.gsub(/\/$/, '')
|
14
|
-
|
15
|
-
@file_path = file_path
|
16
|
-
@type = type
|
17
|
-
@logger = logger
|
18
|
-
@document = IqRdf::Document.new
|
19
|
-
|
20
|
-
unless ['ttl', 'nt', 'xml'].include? @type
|
21
|
-
raise "Iqvoc::SkosExporter: Unknown rdf serialization. Parameter 'type' should be 'ttl' (Turtle), 'nt' (N-Triples) or 'xml' (RDF-XML)."
|
22
|
-
end
|
23
|
-
|
24
|
-
unless @file_path.is_a?(String)
|
25
|
-
raise "Iqvoc::SkosExporter#export: Parameter 'file' should be a String."
|
26
|
-
end
|
27
|
-
end
|
28
|
-
|
29
|
-
def run
|
30
|
-
export
|
31
|
-
end
|
32
|
-
|
33
|
-
private
|
34
|
-
|
35
|
-
def export
|
36
|
-
ActiveSupport.run_load_hooks(:rdf_export_before, self)
|
37
|
-
|
38
|
-
start = Time.now
|
39
|
-
@logger.info 'Starting export...'
|
40
|
-
@logger.info "file_path = #{@file_path}"
|
41
|
-
@logger.info "type = #{@type}"
|
42
|
-
|
43
|
-
# add export data
|
44
|
-
add_namespaces(@document)
|
45
|
-
add_collections(@document)
|
46
|
-
add_concepts(@document)
|
47
|
-
|
48
|
-
ActiveSupport.run_load_hooks(:rdf_export_before_save, self)
|
49
|
-
|
50
|
-
# saving export to disk
|
51
|
-
save_file(@file_path, @type, @document)
|
52
|
-
|
53
|
-
done = Time.now
|
54
|
-
@logger.info "Export Job finished in #{(done - start).to_i} seconds."
|
55
|
-
|
56
|
-
ActiveSupport.run_load_hooks(:rdf_export_after, self)
|
57
|
-
end
|
58
|
-
|
59
|
-
def add_namespaces(document)
|
60
|
-
@logger.info 'Exporting namespaces...'
|
61
|
-
|
62
|
-
RdfNamespacesHelper.instance_methods.each do |meth|
|
63
|
-
namespaces = send(meth)
|
64
|
-
document.namespaces(namespaces) if namespaces.is_a?(Hash)
|
65
|
-
end
|
66
|
-
|
67
|
-
@logger.info 'Finished exporting namespaces.'
|
68
|
-
end
|
69
|
-
|
70
|
-
def add_collections(document)
|
71
|
-
@logger.info 'Exporting collections...'
|
72
|
-
|
73
|
-
offset = 0
|
74
|
-
while true
|
75
|
-
collections = Iqvoc::Collection.base_class.published.order('id').limit(100).offset(offset)
|
76
|
-
limit = collections.size < 100 ? collections.size : 100
|
77
|
-
break if collections.size == 0
|
78
|
-
|
79
|
-
# Todo: Preloading???
|
80
|
-
collections.each do |collection|
|
81
|
-
render_collection(document, collection)
|
82
|
-
end
|
83
|
-
|
84
|
-
@logger.info "Collections #{offset+1}-#{offset+limit} exported."
|
85
|
-
offset += collections.size # Size is important!
|
86
|
-
end
|
87
|
-
|
88
|
-
@logger.info "Finished exporting collections (#{offset} collections exported)."
|
89
|
-
end
|
90
|
-
|
91
|
-
def add_concepts(document)
|
92
|
-
@logger.info 'Exporting concepts...'
|
93
|
-
|
94
|
-
offset = 0
|
95
|
-
while true
|
96
|
-
concepts = Iqvoc::Concept.base_class.published.order('id').limit(100).offset(offset)
|
97
|
-
limit = concepts.size < 100 ? concepts.size : 100
|
98
|
-
break if concepts.size == 0
|
99
|
-
|
100
|
-
# When in single query mode, AR handles ALL includes to be loaded by that
|
101
|
-
# one query. We don't want that! So let's do it manually :-)
|
102
|
-
ActiveRecord::Associations::Preloader.new.preload(concepts,
|
103
|
-
Iqvoc::Concept.base_class.default_includes + [
|
104
|
-
:matches,
|
105
|
-
:collection_members,
|
106
|
-
:notations,
|
107
|
-
{ relations: :target, labelings: :target, notes: :annotations }
|
108
|
-
])
|
109
|
-
|
110
|
-
concepts.each do |concept|
|
111
|
-
render_concept(document, concept, true)
|
112
|
-
end
|
113
|
-
|
114
|
-
@logger.info "Concepts #{offset+1}-#{offset+limit} exported."
|
115
|
-
offset += concepts.size # Size is important!
|
116
|
-
end
|
117
|
-
|
118
|
-
@logger.info "Finished exporting concepts (#{offset} concepts exported)."
|
119
|
-
end
|
120
|
-
|
121
|
-
def save_file(file_path, type, content)
|
122
|
-
begin
|
123
|
-
@logger.info "Saving export to '#{@file_path}'"
|
124
|
-
create_directory(@file_path)
|
125
|
-
file = File.open(@file_path, 'w')
|
126
|
-
content = serialize_rdf(content, type)
|
127
|
-
file.write(content)
|
128
|
-
rescue IOError => e
|
129
|
-
# some error occur
|
130
|
-
# e.g not writable
|
131
|
-
ensure
|
132
|
-
file.close unless file == nil
|
133
|
-
end
|
134
|
-
end
|
135
|
-
|
136
|
-
def create_directory(file_path)
|
137
|
-
dirname = File.dirname(file_path)
|
138
|
-
unless File.directory?(dirname)
|
139
|
-
FileUtils.mkdir_p(dirname)
|
140
|
-
end
|
141
|
-
end
|
142
|
-
|
143
|
-
def serialize_rdf(document, type)
|
144
|
-
if type == 'xml'
|
145
|
-
document.to_xml
|
146
|
-
elsif type == 'ttl'
|
147
|
-
document.to_turtle
|
148
|
-
else
|
149
|
-
document.to_ntriples
|
150
|
-
end
|
151
|
-
end
|
152
|
-
end
|
153
|
-
end
|
data/lib/iqvoc/skos_importer.rb
DELETED
@@ -1,337 +0,0 @@
|
|
1
|
-
require 'iqvoc/rdfapi'
|
2
|
-
|
3
|
-
module Iqvoc
|
4
|
-
class SkosImporter
|
5
|
-
class_attribute :first_level_object_classes, :second_level_object_classes
|
6
|
-
self.first_level_object_classes = [
|
7
|
-
Iqvoc::Concept.base_class,
|
8
|
-
Iqvoc::Collection.base_class
|
9
|
-
]
|
10
|
-
self.second_level_object_classes = Iqvoc::Concept.labeling_classes.keys +
|
11
|
-
Iqvoc::Concept.note_classes +
|
12
|
-
Iqvoc::Concept.relation_classes +
|
13
|
-
Iqvoc::Concept.match_classes +
|
14
|
-
Iqvoc::Concept.notation_classes +
|
15
|
-
Iqvoc::Concept.additional_association_classes.keys +
|
16
|
-
[Iqvoc::Concept.root_class] +
|
17
|
-
[Iqvoc::Collection.member_class]
|
18
|
-
|
19
|
-
def self.prepend_first_level_object_classes(args)
|
20
|
-
self.first_level_object_classes.unshift(*args)
|
21
|
-
end
|
22
|
-
|
23
|
-
def initialize(object, default_namespace_url, logger = Rails.logger, publish = true, verbose = false)
|
24
|
-
@file = case object
|
25
|
-
when File
|
26
|
-
File.open(object)
|
27
|
-
when Array
|
28
|
-
object
|
29
|
-
else
|
30
|
-
open(object)
|
31
|
-
end
|
32
|
-
|
33
|
-
@default_namespace_url = default_namespace_url
|
34
|
-
@publish = publish
|
35
|
-
@verbose = verbose
|
36
|
-
@logger = logger
|
37
|
-
|
38
|
-
unless @file.is_a?(File) || @file.is_a?(Array)
|
39
|
-
raise "Iqvoc::SkosImporter#import: Parameter 'file' should be a File or an Array."
|
40
|
-
end
|
41
|
-
|
42
|
-
# Some general Namespaces to support in any case
|
43
|
-
@prefixes = {
|
44
|
-
'http://www.w3.org/2004/02/skos/core#' => 'skos:',
|
45
|
-
'http://www.w3.org/2008/05/skos#' => 'skos:',
|
46
|
-
'http://www.w3.org/1999/02/22-rdf-syntax-ns#' => 'rdf:',
|
47
|
-
default_namespace_url => ':'
|
48
|
-
}
|
49
|
-
# Add the namespaces specified in the Iqvoc config
|
50
|
-
Iqvoc.rdf_namespaces.each do |pref, uri|
|
51
|
-
@prefixes[uri] = "#{pref.to_s}:"
|
52
|
-
end
|
53
|
-
|
54
|
-
@seen_first_level_objects = {} # Concept cache (don't load any concept twice from db)
|
55
|
-
|
56
|
-
# Assign the default concept scheme singleton instance as a seen first level object upfront
|
57
|
-
# in order to handle a missing scheme definition in ntriple data
|
58
|
-
@seen_first_level_objects[Iqvoc::Concept.root_class.instance.origin] = Iqvoc::Concept.root_class
|
59
|
-
|
60
|
-
@new_subjects = {} # Concepts, collections, labels etc. to be published later
|
61
|
-
|
62
|
-
# Triples the importer doesn't understand immediately. Example:
|
63
|
-
#
|
64
|
-
# :a skos:prefLabel "foo". # => What is :a? Remember this and try again later
|
65
|
-
# ....
|
66
|
-
# :a rdf:type skos:Concept # => Now I know :a, good I remembered it's prefLabel...
|
67
|
-
@unknown_second_level_triples = Set.new
|
68
|
-
|
69
|
-
# Hash of arrays of arrays: { "_:n123" => [["pred1", "obj1"], ["pred2", "obj2"]] }
|
70
|
-
@blank_nodes = {}
|
71
|
-
|
72
|
-
@existing_origins = {} # To prevent the creation of first level objects we already have
|
73
|
-
first_level_object_classes.each do |klass|
|
74
|
-
klass.select('origin').load.each do |thing|
|
75
|
-
@existing_origins[thing.origin] = klass
|
76
|
-
end
|
77
|
-
end
|
78
|
-
end
|
79
|
-
|
80
|
-
def run
|
81
|
-
print_known_namespaces
|
82
|
-
print_known_import_classes
|
83
|
-
import @file
|
84
|
-
end
|
85
|
-
|
86
|
-
private
|
87
|
-
|
88
|
-
def import(file)
|
89
|
-
ActiveSupport.run_load_hooks(:skos_importer_before_import, self)
|
90
|
-
|
91
|
-
start = Time.now
|
92
|
-
|
93
|
-
@logger.info "default namespace: '#{@default_namespace_url}'"
|
94
|
-
@logger.info "publish: '#{@publish}'"
|
95
|
-
|
96
|
-
first_level_types = {} # type identifier ("namespace:SomeClass") to Iqvoc class assignment hash
|
97
|
-
first_level_object_classes.each do |klass|
|
98
|
-
first_level_types["#{klass.rdf_namespace}:#{klass.rdf_class}"] = klass
|
99
|
-
end
|
100
|
-
second_level_types = {}
|
101
|
-
second_level_object_classes.each do |klass|
|
102
|
-
second_level_types["#{klass.rdf_namespace}:#{klass.rdf_predicate}"] = klass
|
103
|
-
end
|
104
|
-
|
105
|
-
@logger.info 'Iqvoc::SkosImporter: Importing triples...'
|
106
|
-
file.each_with_index do |line, index|
|
107
|
-
extracted_triple = *extract_triple(line)
|
108
|
-
|
109
|
-
if @verbose && has_unknown_namespaces?(extracted_triple)
|
110
|
-
@logger.warn "Iqvoc::SkosImporter: Unknown namespaces. Skipping #{extracted_triple.join(' ')}"
|
111
|
-
end
|
112
|
-
|
113
|
-
identify_blank_nodes(*extracted_triple) ||
|
114
|
-
import_first_level_objects(first_level_types, *extracted_triple) ||
|
115
|
-
import_second_level_objects(second_level_types, false, line)
|
116
|
-
end
|
117
|
-
|
118
|
-
# treeify blank nodes hash
|
119
|
-
@blank_nodes.each do |origin, bnode_struct|
|
120
|
-
tranform_blank_node(origin, bnode_struct)
|
121
|
-
end
|
122
|
-
|
123
|
-
@logger.info "Computing 'forward' defined triples..."
|
124
|
-
@unknown_second_level_triples.each do |line|
|
125
|
-
import_second_level_objects(second_level_types, true, line)
|
126
|
-
end
|
127
|
-
|
128
|
-
first_import_step_done = Time.now
|
129
|
-
@logger.info "Basic import done (took #{(first_import_step_done - start).to_i} seconds)."
|
130
|
-
|
131
|
-
published = publish
|
132
|
-
|
133
|
-
done = Time.now
|
134
|
-
@logger.info "Publishing of #{published} subjects done (took #{(done - first_import_step_done).to_i} seconds). #{@new_subjects.count - published} are in draft state."
|
135
|
-
@logger.info "Imported #{published} published and #{@new_subjects.count - published} draft subjects in #{(done - start).to_i} seconds."
|
136
|
-
@logger.info "First step took #{(first_import_step_done - start).to_i} seconds, publishing took #{(done - first_import_step_done).to_i} seconds."
|
137
|
-
|
138
|
-
ActiveSupport.run_load_hooks(:skos_importer_after_import, self)
|
139
|
-
end
|
140
|
-
|
141
|
-
def publish
|
142
|
-
published = 0
|
143
|
-
# Respect order of first level classes configured in FIRST_LEVEL_OBJECTS
|
144
|
-
# Example: XL labels have to be published before referencing concepts
|
145
|
-
sorted_new_subjects = @new_subjects.sort_by do |origin, klass|
|
146
|
-
first_level_object_classes.index(klass)
|
147
|
-
end
|
148
|
-
|
149
|
-
if @publish
|
150
|
-
@logger.info "Publishing #{@new_subjects.count} new subjects..."
|
151
|
-
|
152
|
-
sorted_new_subjects.each do |origin, klass|
|
153
|
-
subject = klass.find_by(origin: origin)
|
154
|
-
if subject.publishable?
|
155
|
-
subject.publish!
|
156
|
-
published += 1
|
157
|
-
else
|
158
|
-
@logger.warn "WARNING: Publishing failed! Subject ('#{subject.origin}') invalid: #{subject.errors.to_hash.inspect}"
|
159
|
-
end
|
160
|
-
end
|
161
|
-
end
|
162
|
-
published
|
163
|
-
end
|
164
|
-
|
165
|
-
def identify_blank_nodes(subject, predicate, object)
|
166
|
-
if blank_node?(subject)
|
167
|
-
@blank_nodes[subject] ||= []
|
168
|
-
@blank_nodes[subject] << [predicate, object]
|
169
|
-
true
|
170
|
-
else
|
171
|
-
false
|
172
|
-
end
|
173
|
-
end
|
174
|
-
|
175
|
-
def import_first_level_objects(types, subject, predicate, object)
|
176
|
-
if (predicate == 'rdf:type' && types[object] && subject =~ /^:(.+)$/)
|
177
|
-
# We've found a subject definition with a class we know and which is in our responsibility (":")
|
178
|
-
origin = $1
|
179
|
-
|
180
|
-
if (@existing_origins[origin])
|
181
|
-
if (types[object] == @existing_origins[origin])
|
182
|
-
@logger.info "Iqvoc::SkosImporter: Subject with origin '#{origin}' already exists. Skipping duplicate creation (should be no problem)."
|
183
|
-
else
|
184
|
-
@logger.warn "Iqvoc::SkosImporter: Subject with origin '#{origin} already exists but has another class (#{@existing_origins[origin]}) then the one I wanted to create (#{types[object]}). You seem to have a problem with your configuration!"
|
185
|
-
end
|
186
|
-
else
|
187
|
-
@logger.info "Iqvoc::SkosImporter: Creating Subject: #{subject} #{predicate} #{object}" if @verbose
|
188
|
-
# FIXME
|
189
|
-
|
190
|
-
types[object].create do |klass|
|
191
|
-
klass.origin = origin
|
192
|
-
end
|
193
|
-
@seen_first_level_objects[origin] = types[object]
|
194
|
-
@new_subjects[origin] = types[object]
|
195
|
-
end
|
196
|
-
true
|
197
|
-
else
|
198
|
-
false
|
199
|
-
end
|
200
|
-
end
|
201
|
-
|
202
|
-
def import_second_level_objects(types, final, line)
|
203
|
-
subject, predicate, object = *extract_triple(line)
|
204
|
-
|
205
|
-
return unless (subject =~ /^:(.*)$/ && types[predicate]) # We're not responsible for this
|
206
|
-
|
207
|
-
# Load the subject and replace the string by the respective data object
|
208
|
-
subject_origin = $1
|
209
|
-
subject = load_first_level_object(subject_origin)
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unless subject
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if final
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@logger.warn "Iqvoc::SkosImporter: Couldn't find Subject with origin '#{subject_origin}. Skipping entry '#{subject} #{predicate} #{object}.'"
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else
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@unknown_second_level_triples << line
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215
|
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end
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216
|
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return false
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217
|
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end
|
218
|
-
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219
|
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# Load the data object for the object string if this is representing a thing in our domain
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220
|
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if (object =~ /^:(.*)$/ && types[predicate])
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221
|
-
object_origin = $1
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222
|
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object = load_first_level_object(object_origin)
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223
|
-
unless object
|
224
|
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if final
|
225
|
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@logger.warn "Iqvoc::SkosImporter: Couldn't find Object with origin '#{object_origin}'. Skipping entry ':#{subject_origin} #{predicate} #{object_origin}.'"
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226
|
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else
|
227
|
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@unknown_second_level_triples << line
|
228
|
-
end
|
229
|
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return false
|
230
|
-
end
|
231
|
-
end
|
232
|
-
|
233
|
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# If not in final mode every :my_concept :bla _:blank_node. triple should
|
234
|
-
# be saved for final mode. Why? Example:
|
235
|
-
#
|
236
|
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# :a iqvoc:changeNote _:b01 # => I do not know know anything about the blank node now
|
237
|
-
# _:b01 dc:author "DHH"...
|
238
|
-
#
|
239
|
-
if blank_node?(object)
|
240
|
-
if final
|
241
|
-
object = @blank_nodes[object]
|
242
|
-
else
|
243
|
-
@unknown_second_level_triples << line
|
244
|
-
return false
|
245
|
-
end
|
246
|
-
end
|
247
|
-
begin
|
248
|
-
types[predicate].build_from_rdf(subject, predicate, object)
|
249
|
-
rescue InvalidStringLiteralError => e
|
250
|
-
@logger.warn e.message
|
251
|
-
end
|
252
|
-
end
|
253
|
-
|
254
|
-
def load_first_level_object(origin)
|
255
|
-
unless @seen_first_level_objects[origin]
|
256
|
-
klass = @existing_origins[origin]
|
257
|
-
if klass
|
258
|
-
@seen_first_level_objects[origin] = klass
|
259
|
-
end
|
260
|
-
end
|
261
|
-
|
262
|
-
# FIXME: bang
|
263
|
-
# FIXME: return something?
|
264
|
-
if klass = @seen_first_level_objects[origin]
|
265
|
-
klass.find_by!(origin: origin)
|
266
|
-
end
|
267
|
-
end
|
268
|
-
|
269
|
-
def blank_node?(str)
|
270
|
-
str.dup.to_s =~ /^_:.+/
|
271
|
-
end
|
272
|
-
|
273
|
-
def extract_triple(line)
|
274
|
-
raise "'#{line}' doesn't look like valid ntriples data." unless line =~ /^(.*)\.\s*$/
|
275
|
-
line = $1.squish
|
276
|
-
|
277
|
-
triple = line.split(' ', 3) # The first one are uris the last can be a literal too
|
278
|
-
|
279
|
-
triple.each do |e| # Do some fun with the uris and literals
|
280
|
-
@prefixes.keys.each do |uri_prefix| # Use prefixes instead of full uris
|
281
|
-
e.gsub! /^<#{uri_prefix}([^>]*)>/ do |matches|
|
282
|
-
@prefixes[uri_prefix] + $1.gsub('.', '_')
|
283
|
-
end
|
284
|
-
end
|
285
|
-
e.squish!
|
286
|
-
e.gsub!(/^:(.*)$/) do
|
287
|
-
":#{Iqvoc::Origin.new($1)}" # Force correct origins in the default namespace
|
288
|
-
end
|
289
|
-
end
|
290
|
-
triple
|
291
|
-
end
|
292
|
-
|
293
|
-
def has_unknown_namespaces?(triple)
|
294
|
-
triple.each do |obj|
|
295
|
-
return true if obj =~ /^<.*>$/
|
296
|
-
break
|
297
|
-
end
|
298
|
-
false
|
299
|
-
end
|
300
|
-
|
301
|
-
# if blank node contains another blank node,
|
302
|
-
# move child blank node to his parent
|
303
|
-
def tranform_blank_node(origin, bnode_struct)
|
304
|
-
bnode_struct.each_index do |i|
|
305
|
-
bnode_origin = bnode_struct[i][1] # only origin could contain another blank node
|
306
|
-
if blank_node?(bnode_origin)
|
307
|
-
bnode_child_struct = @blank_nodes[bnode_origin]
|
308
|
-
bnode_struct[i][1] = bnode_child_struct # move to parent node
|
309
|
-
tranform_blank_node(bnode_origin, bnode_child_struct)
|
310
|
-
|
311
|
-
@blank_nodes.delete(bnode_origin) # remove old blank node
|
312
|
-
end
|
313
|
-
end
|
314
|
-
end
|
315
|
-
|
316
|
-
def print_known_namespaces
|
317
|
-
@logger.info "Known namespaces:"
|
318
|
-
@prefixes.each_with_index do |(uri, pref), i|
|
319
|
-
@logger.info "\t #{i+1}: #{pref} => #{uri}"
|
320
|
-
end
|
321
|
-
end
|
322
|
-
|
323
|
-
def print_known_import_classes
|
324
|
-
@logger.info "Known first level classes:"
|
325
|
-
first_level_object_classes.each_with_index do |floc, i|
|
326
|
-
@logger.info "\t #{i+1}: #{floc.rdf_namespace}:#{floc.rdf_class} => #{floc.to_s}"
|
327
|
-
end
|
328
|
-
|
329
|
-
@logger.info "Known second level classes:"
|
330
|
-
second_level_object_classes.each_with_index do |sloc, i|
|
331
|
-
@logger.info "\t #{i+1}: #{sloc.rdf_namespace}:#{sloc.rdf_predicate} => #{sloc.to_s}"
|
332
|
-
end
|
333
|
-
end
|
334
|
-
|
335
|
-
ActiveSupport.run_load_hooks(:skos_importer, self)
|
336
|
-
end
|
337
|
-
end
|