iqvoc 4.12.1 → 4.13.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +14 -0
- data/Gemfile +26 -42
- data/Gemfile.lock +372 -340
- data/README.md +3 -3
- data/{vendor → app}/assets/images/ajax-loader.gif +0 -0
- data/{vendor → app}/assets/images/treeview-default-line.gif +0 -0
- data/app/assets/javascripts/framework.js +5 -9
- data/app/assets/javascripts/iqvoc/autocomplete.js +2 -0
- data/app/assets/javascripts/iqvoc/concept_mapping_manager.js +141 -123
- data/app/assets/javascripts/iqvoc/create_note.js +52 -0
- data/app/assets/javascripts/iqvoc/debounce.js +21 -0
- data/app/assets/javascripts/iqvoc/{entityselect.js.erb → entityselect.js} +7 -5
- data/app/assets/javascripts/iqvoc/entityselect_qualified.js +51 -0
- data/app/assets/javascripts/iqvoc/federated_concept_mapper.js +126 -56
- data/app/assets/javascripts/iqvoc/iqvoc.js +16 -115
- data/app/assets/javascripts/iqvoc/label_resolver.js +35 -30
- data/app/assets/javascripts/iqvoc/langselect.js +2 -2
- data/app/assets/javascripts/iqvoc/manifest.js +11 -12
- data/app/assets/javascripts/iqvoc/treeview.js +227 -228
- data/app/assets/javascripts/manifest.js +2 -2
- data/app/assets/stylesheets/_framework.scss +3 -4
- data/app/assets/stylesheets/iqvoc/{settings/_bootstrap.scss → _bootstrap_overrides.scss} +54 -6
- data/app/assets/stylesheets/iqvoc/_manifest.scss +15 -17
- data/app/assets/stylesheets/iqvoc/components/_components.scss +31 -50
- data/app/assets/stylesheets/iqvoc/components/_entity_select.scss +0 -1
- data/app/assets/stylesheets/iqvoc/components/_label-list.scss +3 -3
- data/app/assets/stylesheets/iqvoc/components/_modals.scss +3 -5
- data/app/assets/stylesheets/iqvoc/components/_notes.scss +5 -0
- data/app/assets/stylesheets/iqvoc/components/_onebox.scss +18 -0
- data/app/assets/stylesheets/iqvoc/components/_sidebars.scss +6 -2
- data/app/assets/stylesheets/iqvoc/components/_simplete.scss +37 -0
- data/app/assets/stylesheets/iqvoc/components/{_treeview.scss.erb → _treeview.scss} +11 -3
- data/app/assets/stylesheets/iqvoc/components/typeahead.scss +4 -2
- data/app/assets/stylesheets/iqvoc/settings/_bootstrap-variables.scss +1 -853
- data/app/assets/stylesheets/iqvoc/settings/_fonts.scss +35 -35
- data/app/assets/stylesheets/iqvoc/settings/_manifest.scss +4 -0
- data/app/assets/stylesheets/iqvoc/{mixins → settings}/_mixins.scss +4 -0
- data/app/assets/stylesheets/{manifest.css.scss → manifest.scss} +1 -1
- data/app/controllers/collections_controller.rb +6 -3
- data/app/controllers/concepts/alphabetical_controller.rb +18 -16
- data/app/controllers/concepts/expired_controller.rb +9 -10
- data/app/controllers/concepts/hierarchical_controller.rb +1 -3
- data/app/controllers/concepts/scheme_controller.rb +4 -1
- data/app/controllers/concepts/untranslated_controller.rb +1 -1
- data/app/controllers/concepts/versions_controller.rb +1 -0
- data/app/controllers/concepts_controller.rb +4 -0
- data/app/controllers/concerns/controller_extensions.rb +37 -3
- data/app/controllers/errors_controller.rb +8 -0
- data/app/controllers/exports_controller.rb +1 -1
- data/app/controllers/frontpage_controller.rb +8 -1
- data/app/controllers/hierarchy_controller.rb +7 -1
- data/app/controllers/imports_controller.rb +1 -1
- data/app/controllers/rdf_controller.rb +3 -0
- data/app/controllers/search_results_controller.rb +7 -1
- data/app/controllers/user_sessions_controller.rb +5 -3
- data/app/controllers/users_controller.rb +2 -2
- data/app/helpers/application_helper.rb +1 -1
- data/app/helpers/concepts_helper.rb +2 -1
- data/app/helpers/dashboard_helper.rb +6 -2
- data/app/helpers/form_helper.rb +1 -1
- data/app/helpers/navigation_helper.rb +20 -9
- data/app/helpers/rdf_helper.rb +14 -0
- data/app/helpers/search_results_helper.rb +1 -1
- data/app/models/ability.rb +3 -0
- data/app/models/abstract_user.rb +19 -7
- data/app/models/application_record.rb +3 -0
- data/app/models/collection/base.rb +9 -9
- data/app/models/collection/member/base.rb +6 -3
- data/app/models/concept/base.rb +102 -32
- data/app/models/concept/relation/base.rb +3 -3
- data/app/models/concept/skos/base.rb +10 -0
- data/app/models/concerns/search_extension.rb +1 -1
- data/app/models/concerns/versioning.rb +11 -4
- data/app/models/configuration_setting.rb +1 -1
- data/app/models/dataset/iqvoc_dataset.rb +3 -2
- data/app/models/export.rb +2 -2
- data/app/models/import.rb +1 -1
- data/app/models/label/base.rb +26 -7
- data/app/models/labeling/base.rb +1 -1
- data/app/models/labeling/skos/alt_label.rb +4 -0
- data/app/models/labeling/skos/base.rb +1 -1
- data/app/models/labeling/skos/hidden_label.rb +2 -2
- data/app/models/match/base.rb +5 -3
- data/app/models/notation/base.rb +4 -1
- data/app/models/note/annotated/base.rb +1 -1
- data/app/models/note/base.rb +23 -5
- data/app/views/collections/_data.html.erb +16 -2
- data/app/views/collections/_form.html.erb +2 -2
- data/app/views/collections/_sidebar.html.erb +16 -8
- data/app/views/collections/show_published.html.erb +4 -4
- data/app/views/collections/show_unpublished.html.erb +6 -6
- data/app/views/concepts/_form.html.erb +2 -3
- data/app/views/concepts/alphabetical/_search_result.html.erb +10 -11
- data/app/views/concepts/alphabetical/index.html.erb +7 -2
- data/app/views/concepts/expired/index.html.erb +10 -5
- data/app/views/concepts/glance.html.erb +5 -4
- data/app/views/concepts/scheme/edit.html.erb +1 -1
- data/app/views/concepts/scheme/show.html.erb +2 -2
- data/app/views/concepts/scheme/show.iqrdf +1 -6
- data/app/views/concepts/show_published.html.erb +4 -4
- data/app/views/concepts/show_unpublished.html.erb +6 -6
- data/app/views/concepts/sidebars/_plural.html.erb +7 -2
- data/app/views/concepts/sidebars/_singular.html.erb +12 -7
- data/app/views/dashboard/_sidebar.html.erb +3 -0
- data/app/views/dashboard/_table.html.erb +20 -9
- data/app/views/dashboard/glance.html.erb +5 -4
- data/app/views/dashboard/index.html.erb +4 -1
- data/app/views/errors/access_denied.html.erb +17 -2
- data/app/views/errors/not_found.html.erb +17 -3
- data/app/views/errors/server_error.html.erb +38 -0
- data/app/views/frontpage/index.html.erb +28 -7
- data/app/views/instance_configuration/index.html.erb +4 -4
- data/app/views/kaminari/_first_page.html.erb +13 -0
- data/app/views/kaminari/_gap.html.erb +10 -0
- data/app/views/kaminari/_last_page.html.erb +13 -0
- data/app/views/kaminari/_next_page.html.erb +13 -0
- data/app/views/kaminari/_page.html.erb +18 -0
- data/app/views/kaminari/_paginator.html.erb +25 -0
- data/app/views/kaminari/_prev_page.html.erb +13 -0
- data/app/views/layouts/_controls.html.erb +30 -27
- data/app/views/layouts/_navigation.html.erb +15 -15
- data/app/views/layouts/_sections.html.erb +3 -1
- data/app/views/layouts/_user_navigation.html.erb +24 -34
- data/app/views/layouts/application.html.erb +41 -41
- data/app/views/pages/components.html.erb +5 -5
- data/app/views/pages/version.html.erb +12 -14
- data/app/views/partials/collection/_new_link_base.html.erb +5 -3
- data/app/views/partials/concept/_new_link_base.html.erb +5 -3
- data/app/views/partials/labeling/skos/_edit_base.html.erb +3 -1
- data/app/views/partials/match/_edit_base.html.erb +1 -1
- data/app/views/partials/notation/_edit_base.html.erb +1 -1
- data/app/views/partials/note/_edit_base.html.erb +19 -6
- data/app/views/partials/note/_note.html.erb +1 -1
- data/app/views/partials/note/_search_result.html.erb +1 -1
- data/app/views/partials/note/skos/_edit_change_note.html.erb +1 -0
- data/app/views/partials/note/skos/change_note/_search_result.html.erb +1 -1
- data/app/views/partials/note/skos/definition/_search_result.html.erb +1 -1
- data/app/views/search_results/_form.html.erb +4 -4
- data/app/views/search_results/_result_list.html.erb +15 -0
- data/app/views/search_results/_sidebar.html.erb +2 -0
- data/app/views/search_results/index.html.erb +1 -11
- data/app/views/search_results/index.iqrdf +2 -2
- data/app/views/search_results/sections/_change_note.html.erb +8 -8
- data/app/views/search_results/sections/_collection.html.erb +2 -2
- data/app/views/search_results/sections/_datasets.html.erb +9 -6
- data/app/views/search_results/sections/_klass.html.erb +2 -2
- data/app/views/search_results/sections/_languages.html.erb +11 -8
- data/app/views/search_results/sections/_mode.html.erb +2 -2
- data/app/views/search_results/sections/_note.html.erb +1 -1
- data/app/views/search_results/sections/_terms.html.erb +10 -11
- data/app/views/search_results/sections/_type.html.erb +14 -11
- data/app/views/triplestore_sync/index.html.erb +1 -1
- data/app/views/users/_form.html.erb +3 -1
- data/app/views/users/index.html.erb +8 -5
- data/config/application.rb +19 -32
- data/config/boot.rb +2 -17
- data/config/cable.yml +10 -0
- data/config/database.yml +12 -11
- data/config/database.yml.postgresql +14 -12
- data/config/engine.rb +4 -10
- data/config/environment.rb +4 -20
- data/config/environments/heroku.rb +0 -13
- data/config/initializers/apipie.rb +2 -0
- data/config/initializers/application_controller_renderer.rb +8 -0
- data/config/initializers/backtrace_silencers.rb +0 -16
- data/config/initializers/content_security_policy.rb +25 -0
- data/config/initializers/cookies_serializer.rb +2 -0
- data/config/initializers/delayed_job.rb +0 -1
- data/config/initializers/inflections.rb +0 -16
- data/config/initializers/iqvoc.rb +0 -2
- data/config/initializers/linked_data.rb +5 -0
- data/config/initializers/mime_types.rb +0 -16
- data/config/initializers/new_framework_defaults_5_1.rb +14 -0
- data/config/initializers/session_store.rb +0 -16
- data/config/initializers/sqlite3_booleans.rb +1 -0
- data/config/initializers/wrap_parameters.rb +2 -2
- data/config/locales/activerecord.de.yml +8 -7
- data/config/locales/activerecord.en.yml +2 -0
- data/config/locales/de.yml +25 -17
- data/config/locales/en.yml +15 -3
- data/config/puma.rb +37 -0
- data/config/routes.rb +3 -0
- data/config/secrets.yml +24 -0
- data/config/storage.yml +34 -0
- data/db/migrate/20100927101502_create_schema.rb +1 -1
- data/db/migrate/20101125141218_add_collection_tables.rb +1 -1
- data/db/migrate/20101129161528_add_type_to_collections.rb +1 -1
- data/db/migrate/20101202094602_add_origin_to_collections.rb +1 -1
- data/db/migrate/20101202135420_rename_collection_contents_to_collection_members.rb +1 -1
- data/db/migrate/20101208103531_add_type_to_collection_contents.rb +1 -1
- data/db/migrate/20101210153916_add_indexes_to_collections.rb +1 -1
- data/db/migrate/20110204121244_create_collection_labels.rb +1 -1
- data/db/migrate/20110208084250_change_origin_lengths.rb +1 -1
- data/db/migrate/20110328124300_discard_collection_specifics.rb +1 -1
- data/db/migrate/20110408120357_remove_classifications_and_classifiers.rb +1 -1
- data/db/migrate/20110408120740_remove_xl_specfic_stuff.rb +1 -1
- data/db/migrate/20110420133640_change_value_in_notes.rb +1 -1
- data/db/migrate/20110427120534_add_published_at_to_labels.rb +1 -1
- data/db/migrate/20110510162719_use_mono_hierarchy_instead_of_poly_hierarchy.rb +1 -1
- data/db/migrate/20110512132624_extend_notes_value_field_length.rb +1 -1
- data/db/migrate/20110525103100_separate_note_annotation_predicates.rb +1 -1
- data/db/migrate/20110615134040_change_umt_note_annotations_to_dct.rb +1 -1
- data/db/migrate/20120119000000_create_configuration_settings.rb +1 -1
- data/db/migrate/20120201120736_add_top_term_to_concepts.rb +1 -1
- data/db/migrate/20120326102037_add_rank_to_concept_relations.rb +1 -1
- data/db/migrate/20130227145825_fix_collection_type.rb +1 -1
- data/db/migrate/20130315093255_add_notations.rb +1 -1
- data/db/migrate/20130315141952_add_indexes_to_notations.rb +1 -1
- data/db/migrate/20130418093837_add_language_to_note_annotations.rb +1 -1
- data/db/migrate/20130502151221_fix_collection_member_types.rb +1 -1
- data/db/migrate/20130508103137_adjust_note_languages_setting.rb +2 -2
- data/db/migrate/20131220134356_create_delayed_jobs.rb +1 -1
- data/db/migrate/20131220144601_create_imports.rb +1 -1
- data/db/migrate/20140423095147_create_exports.rb +1 -1
- data/db/migrate/20140425130615_add_fk_indexes_to_exports_and_imports.rb +1 -1
- data/db/migrate/20140505144919_add_import_file_to_imports.rb +1 -1
- data/db/migrate/20140506073428_add_missing_imports_attributes.rb +1 -1
- data/db/migrate/20140506133619_add_namespace_to_exports.rb +1 -1
- data/db/migrate/20140730132113_add_type_to_users.rb +1 -1
- data/db/migrate/20140807072457_create_job_relations.rb +1 -1
- data/db/migrate/20140807123413_add_response_error_to_job_relation.rb +1 -1
- data/db/migrate/20141204151558_add_foreign_key_constraints.rb +1 -1
- data/db/migrate/20150316103756_delayed_jobs_optimizations.rb +1 -1
- data/db/migrate/20150317162953_drop_job_relation.rb +1 -1
- data/db/migrate/20170608093748_extend_job_output_log.rb +1 -1
- data/db/migrate/20170626074649_add_note_annotations_index.rb +1 -1
- data/db/migrate/20180430163647_utf8mb4_conversion.rb +1 -1
- data/db/migrate/20180525135715_fix_note_annotations_index.rb +1 -1
- data/db/migrate/20190403133600_change_collation.rb +1 -1
- data/db/migrate/20200220134024_add_position_to_notes.rb +5 -0
- data/db/migrate/20200529053158_extend_users.rb +14 -0
- data/db/migrate/20200901143030_add_collection_type_index.rb +5 -0
- data/db/schema.rb +120 -123
- data/iqvoc.gemspec +15 -13
- data/lib/iqvoc/configuration/core.rb +1 -3
- data/lib/iqvoc/configuration/navigation.rb +6 -0
- data/lib/iqvoc/environments/development.rb +29 -47
- data/lib/iqvoc/environments/production.rb +37 -30
- data/lib/iqvoc/environments/test.rb +11 -9
- data/lib/iqvoc/version.rb +1 -1
- data/lib/tasks/cleanup.rake +37 -0
- data/lib/tasks/db.rake +32 -0
- data/public/assets/fonts/FiraMono-Regular-0b6138c5b386dc9125473fd851926f29.ttf +0 -0
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- data/vendor/assets/javascripts/bootstrap-datepicker-1.6.4-dist/css/bootstrap-datepicker3.standalone.css +0 -707
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- data/vendor/assets/javascripts/bootstrap-datepicker-1.6.4-dist/locales/bootstrap-datepicker.fr.min.js +0 -1
- data/vendor/assets/javascripts/bootstrap-datepicker-1.6.4-dist/locales/bootstrap-datepicker.gl.min.js +0 -1
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- data/vendor/assets/javascripts/bootstrap-datepicker-1.6.4-dist/locales/bootstrap-datepicker.hr.min.js +0 -1
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data/db/schema.rb
CHANGED
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# encoding: UTF-8
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# This file is auto-generated from the current state of the database. Instead
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# of editing this file, please use the migrations feature of Active Record to
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# incrementally modify your database, and then regenerate this schema definition.
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#
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# It's strongly recommended that you check this file into your version control system.
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ActiveRecord::Schema.define(version:
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ActiveRecord::Schema.define(version: 2020_09_01_143030) do
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# These are extensions that must be enabled in order to support this database
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enable_extension "plpgsql"
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create_table "collection_members", force: :cascade do |t|
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create_table "collection_members", id: :serial, force: :cascade do |t|
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t.integer "collection_id"
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t.integer "target_id"
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t.string
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t.string "type"
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+
t.index ["collection_id", "target_id", "type"], name: "ix_collections_fk_type"
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t.index ["type"], name: "index_collection_members_on_type"
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end
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t.
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t.integer "owner_id"
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t.integer "target_id"
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create_table "concept_relations", id: :serial, force: :cascade do |t|
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t.string "type"
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t.integer "owner_id"
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t.integer "target_id"
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t.datetime "created_at"
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t.datetime "updated_at"
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t.integer
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t.integer "rank", default: 100
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t.index ["owner_id", "target_id"], name: "ix_concept_relations_fk"
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end
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t.integer
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t.date
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t.boolean "to_review"
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t.date "rdf_updated_at"
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create_table "concepts", id: :serial, force: :cascade do |t|
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t.string "type"
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t.string "origin", limit: 4000
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t.integer "rev", default: 1
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t.date "published_at"
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t.integer "published_version_id"
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t.integer "locked_by"
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t.date "expired_at"
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t.date "follow_up"
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t.boolean "to_review"
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t.date "rdf_updated_at"
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t.datetime "created_at"
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t.datetime "updated_at"
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t.boolean
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t.boolean "top_term", default: false
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t.index ["origin"], name: "ix_concepts_on_origin"
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t.index ["published_version_id"], name: "ix_concepts_publ_version_id"
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end
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-
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add_index "concepts", ["published_version_id"], name: "ix_concepts_publ_version_id", using: :btree
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-
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-
create_table "configuration_settings", force: :cascade do |t|
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+
create_table "configuration_settings", id: :serial, force: :cascade do |t|
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t.string "key"
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t.string "value"
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end
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create_table "delayed_jobs", force: :cascade do |t|
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t.integer
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t.integer
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t.text
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t.text
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create_table "delayed_jobs", id: :serial, force: :cascade do |t|
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t.integer "priority", default: 0, null: false
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t.integer "attempts", default: 0, null: false
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t.text "handler", null: false
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t.text "last_error"
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t.datetime "run_at"
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t.datetime "locked_at"
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t.datetime "failed_at"
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t.string
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t.string
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t.string "locked_by"
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t.string "queue"
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t.datetime "created_at"
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t.datetime "updated_at"
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t.string
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t.string
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t.integer
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t.string
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t.string "error_message"
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t.string "delayed_reference_type"
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t.integer "delayed_reference_id"
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+
t.string "delayed_global_reference_id"
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+
t.index ["delayed_global_reference_id"], name: "delayed_jobs_delayed_global_reference_id"
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+
t.index ["delayed_reference_id"], name: "delayed_jobs_delayed_reference_id"
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77
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+
t.index ["delayed_reference_type"], name: "delayed_jobs_delayed_reference_type"
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78
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+
t.index ["priority", "run_at"], name: "delayed_jobs_priority"
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+
t.index ["queue"], name: "delayed_jobs_queue"
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end
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-
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-
|
86
|
-
create_table "exports", force: :cascade do |t|
|
87
|
-
t.integer "user_id"
|
88
|
-
t.text "output"
|
89
|
-
t.boolean "success", default: false
|
90
|
-
t.integer "file_type"
|
91
|
-
t.string "token"
|
82
|
+
create_table "exports", id: :serial, force: :cascade do |t|
|
83
|
+
t.integer "user_id"
|
84
|
+
t.text "output"
|
85
|
+
t.boolean "success", default: false
|
86
|
+
t.integer "file_type"
|
87
|
+
t.string "token"
|
92
88
|
t.datetime "created_at"
|
93
89
|
t.datetime "updated_at"
|
94
90
|
t.datetime "finished_at"
|
95
|
-
t.string
|
91
|
+
t.string "default_namespace"
|
92
|
+
t.index ["user_id"], name: "index_exports_on_user_id"
|
96
93
|
end
|
97
94
|
|
98
|
-
|
99
|
-
|
100
|
-
|
101
|
-
t.
|
102
|
-
t.text "output"
|
103
|
-
t.boolean "success", default: false
|
95
|
+
create_table "imports", id: :serial, force: :cascade do |t|
|
96
|
+
t.integer "user_id"
|
97
|
+
t.text "output"
|
98
|
+
t.boolean "success", default: false
|
104
99
|
t.datetime "created_at"
|
105
100
|
t.datetime "updated_at"
|
106
101
|
t.datetime "finished_at"
|
107
|
-
t.string
|
108
|
-
t.boolean
|
109
|
-
t.string
|
102
|
+
t.string "import_file"
|
103
|
+
t.boolean "publish"
|
104
|
+
t.string "default_namespace"
|
105
|
+
t.index ["user_id"], name: "index_imports_on_user_id"
|
110
106
|
end
|
111
107
|
|
112
|
-
|
113
|
-
|
114
|
-
|
115
|
-
t.
|
116
|
-
t.integer "owner_id"
|
117
|
-
t.integer "target_id"
|
108
|
+
create_table "labelings", id: :serial, force: :cascade do |t|
|
109
|
+
t.string "type"
|
110
|
+
t.integer "owner_id"
|
111
|
+
t.integer "target_id"
|
118
112
|
t.datetime "created_at"
|
119
113
|
t.datetime "updated_at"
|
114
|
+
t.index ["owner_id", "target_id", "type"], name: "ix_labelings_fk_type"
|
115
|
+
t.index ["type"], name: "ix_labelings_on_type"
|
120
116
|
end
|
121
117
|
|
122
|
-
|
123
|
-
|
124
|
-
|
125
|
-
|
126
|
-
t.string
|
127
|
-
t.string "origin", limit: 4000
|
128
|
-
t.string "language"
|
129
|
-
t.string "value", limit: 1024
|
118
|
+
create_table "labels", id: :serial, force: :cascade do |t|
|
119
|
+
t.string "type"
|
120
|
+
t.string "origin", limit: 4000
|
121
|
+
t.string "language"
|
122
|
+
t.string "value", limit: 1024
|
130
123
|
t.datetime "created_at"
|
131
124
|
t.datetime "updated_at"
|
132
|
-
t.date
|
125
|
+
t.date "published_at"
|
126
|
+
t.index ["language"], name: "ix_labels_on_language"
|
127
|
+
t.index ["origin"], name: "ix_labels_on_origin"
|
133
128
|
end
|
134
129
|
|
135
|
-
|
136
|
-
|
137
|
-
|
138
|
-
|
139
|
-
t.integer "concept_id"
|
140
|
-
t.string "type"
|
141
|
-
t.string "value"
|
130
|
+
create_table "matches", id: :serial, force: :cascade do |t|
|
131
|
+
t.integer "concept_id"
|
132
|
+
t.string "type"
|
133
|
+
t.string "value"
|
142
134
|
t.datetime "created_at"
|
143
135
|
t.datetime "updated_at"
|
136
|
+
t.index ["concept_id", "type"], name: "ix_matches_fk_type"
|
137
|
+
t.index ["type"], name: "ix_matches_on_type"
|
144
138
|
end
|
145
139
|
|
146
|
-
|
147
|
-
add_index "matches", ["type"], name: "ix_matches_on_type", using: :btree
|
148
|
-
|
149
|
-
create_table "notations", force: :cascade do |t|
|
140
|
+
create_table "notations", id: :serial, force: :cascade do |t|
|
150
141
|
t.integer "concept_id"
|
151
|
-
t.string
|
152
|
-
t.string
|
142
|
+
t.string "value", limit: 4000
|
143
|
+
t.string "data_type", limit: 4000
|
144
|
+
t.index ["concept_id"], name: "index_notations_on_concept_id"
|
153
145
|
end
|
154
146
|
|
155
|
-
|
156
|
-
|
157
|
-
|
158
|
-
t.
|
159
|
-
t.string "predicate", limit: 50
|
160
|
-
t.string "value", limit: 1024
|
147
|
+
create_table "note_annotations", id: :serial, force: :cascade do |t|
|
148
|
+
t.integer "note_id"
|
149
|
+
t.string "predicate", limit: 50
|
150
|
+
t.string "value", limit: 1024
|
161
151
|
t.datetime "created_at"
|
162
152
|
t.datetime "updated_at"
|
163
|
-
t.string
|
164
|
-
t.string
|
153
|
+
t.string "namespace", limit: 50
|
154
|
+
t.string "language"
|
155
|
+
t.index ["note_id"], name: "ix_note_annotations_fk"
|
156
|
+
t.index ["value"], name: "index_note_annotations_on_value"
|
165
157
|
end
|
166
158
|
|
167
|
-
|
168
|
-
|
169
|
-
|
170
|
-
|
171
|
-
t.string "language", limit: 2
|
172
|
-
t.string "value", limit: 4000
|
173
|
-
t.string "type", limit: 50
|
159
|
+
create_table "notes", id: :serial, force: :cascade do |t|
|
160
|
+
t.string "language", limit: 2
|
161
|
+
t.string "value", limit: 4000
|
162
|
+
t.string "type", limit: 50
|
174
163
|
t.datetime "created_at"
|
175
164
|
t.datetime "updated_at"
|
176
|
-
t.integer
|
177
|
-
t.string
|
165
|
+
t.integer "owner_id"
|
166
|
+
t.string "owner_type", null: false
|
167
|
+
t.integer "position"
|
168
|
+
t.index ["language"], name: "ix_notes_on_language"
|
169
|
+
t.index ["owner_id", "owner_type", "type"], name: "ix_notes_fk_type"
|
170
|
+
t.index ["type"], name: "ix_notes_on_type"
|
178
171
|
end
|
179
172
|
|
180
|
-
|
181
|
-
|
182
|
-
|
183
|
-
|
184
|
-
|
185
|
-
t.
|
186
|
-
t.string "surname"
|
187
|
-
t.string "email"
|
188
|
-
t.string "crypted_password"
|
189
|
-
t.boolean "active"
|
173
|
+
create_table "users", id: :serial, force: :cascade do |t|
|
174
|
+
t.string "forename"
|
175
|
+
t.string "surname"
|
176
|
+
t.string "email"
|
177
|
+
t.string "crypted_password"
|
178
|
+
t.boolean "active"
|
190
179
|
t.datetime "created_at"
|
191
180
|
t.datetime "updated_at"
|
192
|
-
t.string
|
193
|
-
t.string
|
194
|
-
t.string
|
195
|
-
t.string
|
196
|
-
t.string
|
197
|
-
t.string
|
181
|
+
t.string "password_salt"
|
182
|
+
t.string "persistence_token"
|
183
|
+
t.string "perishable_token"
|
184
|
+
t.string "role"
|
185
|
+
t.string "telephone_number"
|
186
|
+
t.string "type", default: "User"
|
187
|
+
t.text "comment"
|
188
|
+
t.integer "login_count", default: 0, null: false
|
189
|
+
t.integer "failed_login_count", default: 0, null: false
|
190
|
+
t.datetime "last_request_at"
|
191
|
+
t.datetime "current_login_at"
|
192
|
+
t.datetime "last_login_at"
|
193
|
+
t.string "current_login_ip"
|
194
|
+
t.string "last_login_ip"
|
198
195
|
end
|
199
196
|
|
200
197
|
add_foreign_key "collection_members", "concepts", column: "collection_id", on_update: :cascade
|
data/iqvoc.gemspec
CHANGED
@@ -13,31 +13,33 @@ Gem::Specification.new do |s|
|
|
13
13
|
s.description = 'iQvoc - a SKOS(-XL) vocabulary management system built on the Semantic Web'
|
14
14
|
s.license = 'Apache License 2.0'
|
15
15
|
|
16
|
-
s.add_dependency
|
16
|
+
s.add_dependency 'rails', '>= 5.2.0', '< 6.0'
|
17
|
+
s.add_dependency 'puma', '< 6.0'
|
18
|
+
s.add_dependency 'bootsnap', '>= 1.1.0'
|
17
19
|
s.add_dependency 'bundler'
|
18
|
-
s.add_dependency 'kaminari', '~>
|
19
|
-
s.add_dependency '
|
20
|
-
s.add_dependency '
|
20
|
+
s.add_dependency 'kaminari', '~> 1.2.0'
|
21
|
+
s.add_dependency 'authlogic', '~> 6.2.0'
|
22
|
+
s.add_dependency 'scrypt'
|
21
23
|
s.add_dependency 'cancancan', '~> 2.3.0'
|
22
24
|
s.add_dependency 'iq_rdf', '>= 0.1.16'
|
23
25
|
s.add_dependency 'json'
|
24
26
|
s.add_dependency 'rails_autolink'
|
25
27
|
s.add_dependency 'faraday', '0.9.0'
|
26
28
|
s.add_dependency 'faraday_middleware'
|
27
|
-
s.add_dependency '
|
28
|
-
s.add_dependency 'bootstrap-sass', '~> 3.4.1'
|
29
|
-
s.add_dependency 'bootstrap_form', '~> 2.2.0'
|
29
|
+
s.add_dependency 'bootstrap_form', '~> 4.0'
|
30
30
|
s.add_dependency 'iq_triplestorage'
|
31
|
-
s.add_dependency 'nokogiri'
|
32
|
-
s.add_dependency 'linkeddata'
|
33
|
-
s.add_dependency '
|
31
|
+
s.add_dependency 'nokogiri'
|
32
|
+
s.add_dependency 'linkeddata'
|
33
|
+
s.add_dependency 'rdf-vocab'
|
34
|
+
s.add_dependency 'deep_cloneable'
|
34
35
|
s.add_dependency 'uglifier', '>= 1.3.0'
|
35
|
-
s.add_dependency 'apipie-rails'
|
36
|
+
s.add_dependency 'apipie-rails'
|
36
37
|
s.add_dependency 'maruku'
|
37
|
-
s.add_dependency 'database_cleaner'
|
38
|
+
s.add_dependency 'database_cleaner', '~> 1.8.5'
|
38
39
|
s.add_dependency 'delayed_job_active_record', '~> 4.1.1'
|
39
40
|
s.add_dependency 'carrierwave'
|
40
|
-
s.add_dependency '
|
41
|
+
s.add_dependency 'rack-mini-profiler'
|
42
|
+
s.add_dependency 'faucet_pipeline_rails'
|
41
43
|
|
42
44
|
s.files = %w(LICENSE README.md CHANGELOG.md Gemfile Gemfile.lock Rakefile iqvoc.gemspec) +
|
43
45
|
Dir.glob('{app,config,db,public,lib,test,vendor}/**/*')
|
@@ -28,8 +28,6 @@ module Iqvoc
|
|
28
28
|
self.core_assets = %w(
|
29
29
|
manifest.css
|
30
30
|
manifest.js
|
31
|
-
iqvoc/ie_fixes.css
|
32
|
-
html5shiv/dist/html5shiv.js
|
33
31
|
*.png
|
34
32
|
*.jpg
|
35
33
|
*.jpeg
|
@@ -46,7 +44,7 @@ module Iqvoc
|
|
46
44
|
controller: 'dashboard',
|
47
45
|
:authorized? => proc { can? :use, :dashboard }
|
48
46
|
}, {
|
49
|
-
text: '
|
47
|
+
text: proc { t('txt.views.navigation.scheme') },
|
50
48
|
href: proc { scheme_path },
|
51
49
|
controller: 'concepts/scheme',
|
52
50
|
:authorized? => proc { can? :read, Iqvoc::Concept.root_class.instance }
|
@@ -33,6 +33,12 @@ module Iqvoc
|
|
33
33
|
end
|
34
34
|
end
|
35
35
|
|
36
|
+
# removes first item matching name
|
37
|
+
def self.remove(name)
|
38
|
+
item = items.find { |menu_item| menu_item[:text] == name}
|
39
|
+
items.delete(item)
|
40
|
+
end
|
41
|
+
|
36
42
|
def self.add_grouped(item, position = nil)
|
37
43
|
index = setup_extension_group(position)
|
38
44
|
items[index][:items] << item
|
@@ -1,35 +1,5 @@
|
|
1
1
|
require 'iqvoc'
|
2
2
|
|
3
|
-
# inject template name
|
4
|
-
class ActionView::TemplateRenderer
|
5
|
-
def render_with_source_comment(context, options)
|
6
|
-
res = render_without_source_comment(context, options)
|
7
|
-
template = determine_template(options)
|
8
|
-
if template.formats.include?(:html)
|
9
|
-
"<!-- Template: #{template.inspect} -->\n".html_safe << res <<
|
10
|
-
"<!-- /Template -->\n".html_safe
|
11
|
-
else
|
12
|
-
res
|
13
|
-
end
|
14
|
-
end
|
15
|
-
alias_method_chain :render, :source_comment
|
16
|
-
end
|
17
|
-
|
18
|
-
# inject partial name
|
19
|
-
class ActionView::PartialRenderer
|
20
|
-
def render_with_source_comment(context, options, block)
|
21
|
-
res = render_without_source_comment(context, options, block)
|
22
|
-
template = @template
|
23
|
-
if template.formats.include?(:html)
|
24
|
-
"<!-- Partial: #{template.inspect} -->\n".html_safe << res <<
|
25
|
-
"<!-- /Partial -->\n".html_safe
|
26
|
-
else
|
27
|
-
res
|
28
|
-
end
|
29
|
-
end
|
30
|
-
alias_method_chain :render, :source_comment
|
31
|
-
end
|
32
|
-
|
33
3
|
module Iqvoc::Environments
|
34
4
|
def self.setup_development(config)
|
35
5
|
# Settings specified here will take precedence over those in config/application.rb.
|
@@ -42,37 +12,49 @@ module Iqvoc::Environments
|
|
42
12
|
# Do not eager load code on boot.
|
43
13
|
config.eager_load = false
|
44
14
|
|
45
|
-
# Show full error reports
|
46
|
-
config.consider_all_requests_local
|
47
|
-
|
15
|
+
# Show full error reports.
|
16
|
+
config.consider_all_requests_local = true
|
17
|
+
|
18
|
+
# Enable/disable caching. By default caching is disabled.
|
19
|
+
# Run rails dev:cache to toggle caching.
|
20
|
+
if Rails.root.join('tmp', 'caching-dev.txt').exist?
|
21
|
+
config.action_controller.perform_caching = true
|
22
|
+
|
23
|
+
config.cache_store = :memory_store
|
24
|
+
config.public_file_server.headers = {
|
25
|
+
'Cache-Control' => "public, max-age=#{2.days.to_i}"
|
26
|
+
}
|
27
|
+
else
|
28
|
+
config.action_controller.perform_caching = false
|
29
|
+
|
30
|
+
config.cache_store = :null_store
|
31
|
+
end
|
32
|
+
|
33
|
+
# Store uploaded files on the local file system (see config/storage.yml for options)
|
34
|
+
config.active_storage.service = :local
|
48
35
|
|
49
36
|
# Don't care if the mailer can't send.
|
50
37
|
config.action_mailer.raise_delivery_errors = false
|
51
38
|
|
39
|
+
config.action_mailer.perform_caching = false
|
40
|
+
|
52
41
|
# Print deprecation notices to the Rails logger.
|
53
42
|
config.active_support.deprecation = :log
|
54
43
|
|
55
|
-
# Raise an error on page load if there are pending migrations
|
44
|
+
# Raise an error on page load if there are pending migrations.
|
56
45
|
config.active_record.migration_error = :page_load
|
57
46
|
|
58
|
-
#
|
59
|
-
|
60
|
-
# number of complex assets.
|
61
|
-
config.assets.debug = true
|
62
|
-
|
63
|
-
# Asset digests allow you to set far-future HTTP expiration dates on all assets,
|
64
|
-
# yet still be able to expire them through the digest params.
|
65
|
-
config.assets.digest = true
|
66
|
-
|
67
|
-
# Adds additional error checking when serving assets at runtime.
|
68
|
-
# Checks for improperly declared sprockets dependencies.
|
69
|
-
# Raises helpful error messages.
|
70
|
-
config.assets.raise_runtime_errors = true
|
47
|
+
# Highlight code that triggered database queries in logs.
|
48
|
+
config.active_record.verbose_query_logs = true
|
71
49
|
|
72
50
|
# Raises error for missing translations
|
73
51
|
config.action_view.raise_on_missing_translations = true
|
74
52
|
|
75
53
|
# Raises error for missing translations
|
76
54
|
config.i18n.enforce_available_locales = true
|
55
|
+
|
56
|
+
# Use an evented file watcher to asynchronously detect changes in source code,
|
57
|
+
# routes, locales, etc. This feature depends on the listen gem.
|
58
|
+
config.file_watcher = ActiveSupport::EventedFileUpdateChecker
|
77
59
|
end
|
78
60
|
end
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@@ -8,7 +8,7 @@ module Iqvoc::Environments
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config.cache_classes = true
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# Eager load code on boot. This eager loads most of Rails and
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# your application in memory, allowing both
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# your application in memory, allowing both threaded web servers
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# and those relying on copy on write to perform better.
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# Rake tasks automatically ignore this option for performance.
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config.eager_load = true
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@@ -17,57 +17,54 @@ module Iqvoc::Environments
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config.consider_all_requests_local = false
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config.action_controller.perform_caching = true
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#
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#
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#
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# NGINX, varnish or squid.
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# config.action_dispatch.rack_cache = true
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# Ensures that a master key has been made available in either ENV["RAILS_MASTER_KEY"]
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# or in config/master.key. This key is used to decrypt credentials (and other encrypted files).
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# config.require_master_key = true
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# Disable
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# Disable serving static files from the `/public` folder by default since
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# Apache or NGINX already handles this.
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config.public_file_server.enabled = ENV['RAILS_SERVE_STATIC_FILES'].present?
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#
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config.
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# config.assets.css_compressor = :sass
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# Do not fallback to assets pipeline if a precompiled asset is missed.
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config.assets.compile = false
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# Asset digests allow you to set far-future HTTP expiration dates on all assets,
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# yet still be able to expire them through the digest params.
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config.assets.digest = true
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# Version of your assets, change this if you want to expire all your assets.
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config.assets.version = '1.0'
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# Enable serving of images, stylesheets, and JavaScripts from an asset server.
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# config.action_controller.asset_host = 'http://assets.example.com'
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# Specifies the header that your server uses for sending files.
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# config.action_dispatch.x_sendfile_header = 'X-Sendfile' # for Apache
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# config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for NGINX
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# Store uploaded files on the local file system (see config/storage.yml for options)
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config.active_storage.service = :local
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# Mount Action Cable outside main process or domain
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# config.action_cable.mount_path = nil
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# config.action_cable.url = 'wss://example.com/cable'
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# config.action_cable.allowed_request_origins = [ 'http://example.com', /http:\/\/example.*/ ]
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# Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
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# config.force_ssl = true
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#
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-
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# Use the lowest log level to ensure availability of diagnostic information
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# when problems arise.
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config.log_level = (ENV['LOG_LEVEL'] || :info)
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# Prepend all log lines with the following tags.
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# Use a different logger for distributed setups.
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# config.logger = ActiveSupport::TaggedLogging.new(SyslogLogger.new)
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config.log_tags = [ :request_id ]
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# Use a different cache store in production.
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# config.cache_store = :mem_cache_store
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#
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# config.
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# Use a real queuing backend for Active Job (and separate queues per environment)
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# config.active_job.queue_adapter = :resque
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# config.active_job.queue_name_prefix = "iqvoc_#{Rails.env}"
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config.action_mailer.perform_caching = false
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# Ignore bad email addresses and do not raise email delivery errors.
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# Set this to true and configure the email server for immediate delivery to raise delivery errors.
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# config.action_mailer.raise_delivery_errors = false
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# Enable locale fallbacks for I18n (makes lookups for any locale fall back to
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# the I18n.default_locale when a translation
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# the I18n.default_locale when a translation cannot be found).
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config.i18n.fallbacks = true
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# Send deprecation notices to registered listeners.
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@@ -76,6 +73,16 @@ module Iqvoc::Environments
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# Use default logging formatter so that PID and timestamp are not suppressed.
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config.log_formatter = ::Logger::Formatter.new
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# Use a different logger for distributed setups.
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# require 'syslog/logger'
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# config.logger = ActiveSupport::TaggedLogging.new(Syslog::Logger.new 'app-name')
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if ENV["RAILS_LOG_TO_STDOUT"].present?
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logger = ActiveSupport::Logger.new(STDOUT)
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logger.formatter = config.log_formatter
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config.logger = ActiveSupport::TaggedLogging.new(logger)
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end
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# Do not dump schema after migrations.
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config.active_record.dump_schema_after_migration = false
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@@ -15,9 +15,11 @@ module Iqvoc::Environments
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# preloads Rails for running tests, you may have to set it to true.
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config.eager_load = false
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# Configure
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config.
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config.
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# Configure public file server for tests with Cache-Control for performance.
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config.public_file_server.enabled = true
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config.public_file_server.headers = {
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'Cache-Control' => "public, max-age=#{1.hour.to_i}"
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}
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# Show full error reports and disable caching.
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config.consider_all_requests_local = true
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@@ -29,20 +31,20 @@ module Iqvoc::Environments
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# Disable request forgery protection in test environment.
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config.action_controller.allow_forgery_protection = false
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# Store uploaded files on the local file system in a temporary directory
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config.active_storage.service = :test
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config.action_mailer.perform_caching = false
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# Tell Action Mailer not to deliver emails to the real world.
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# The :test delivery method accumulates sent emails in the
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# ActionMailer::Base.deliveries array.
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config.action_mailer.delivery_method = :test
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# Randomize the order test cases are executed
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config.active_support.test_order = :random
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# Print deprecation notices to the stderr.
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config.active_support.deprecation = :stderr
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config.i18n.enforce_available_locales = true
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# Raises error for missing translations
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config.action_view.raise_on_missing_translations =
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+
config.action_view.raise_on_missing_translations = true
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end
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end
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