iqvoc 4.12.0 → 4.13.2

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Files changed (855) hide show
  1. checksums.yaml +5 -5
  2. data/CHANGELOG.md +29 -0
  3. data/Gemfile +32 -41
  4. data/Gemfile.lock +439 -351
  5. data/README.md +19 -9
  6. data/{vendor → app}/assets/images/ajax-loader.gif +0 -0
  7. data/{vendor → app}/assets/images/treeview-default-line.gif +0 -0
  8. data/app/assets/javascripts/framework.js +5 -9
  9. data/app/assets/javascripts/iqvoc/autocomplete.js +2 -0
  10. data/app/assets/javascripts/iqvoc/concept_mapping_manager.js +141 -123
  11. data/app/assets/javascripts/iqvoc/create_note.js +52 -0
  12. data/app/assets/javascripts/iqvoc/debounce.js +21 -0
  13. data/app/assets/javascripts/iqvoc/{entityselect.js.erb → entityselect.js} +7 -5
  14. data/app/assets/javascripts/iqvoc/entityselect_qualified.js +51 -0
  15. data/app/assets/javascripts/iqvoc/federated_concept_mapper.js +126 -56
  16. data/app/assets/javascripts/iqvoc/hover_menues.js +14 -0
  17. data/app/assets/javascripts/iqvoc/iqvoc.js +57 -151
  18. data/app/assets/javascripts/iqvoc/label_resolver.js +35 -30
  19. data/app/assets/javascripts/iqvoc/langselect.js +2 -2
  20. data/app/assets/javascripts/iqvoc/manifest.js +12 -12
  21. data/app/assets/javascripts/iqvoc/treeview.js +228 -228
  22. data/app/assets/javascripts/manifest.js +2 -2
  23. data/app/assets/stylesheets/_framework.scss +3 -4
  24. data/app/assets/stylesheets/iqvoc/{settings/_bootstrap.scss → _bootstrap_overrides.scss} +54 -6
  25. data/app/assets/stylesheets/iqvoc/_manifest.scss +15 -17
  26. data/app/assets/stylesheets/iqvoc/components/_components.scss +31 -50
  27. data/app/assets/stylesheets/iqvoc/components/_entity_select.scss +5 -9
  28. data/app/assets/stylesheets/iqvoc/components/_label-list.scss +3 -3
  29. data/app/assets/stylesheets/iqvoc/components/_modals.scss +3 -5
  30. data/app/assets/stylesheets/iqvoc/components/_notes.scss +5 -0
  31. data/app/assets/stylesheets/iqvoc/components/_onebox.scss +18 -0
  32. data/app/assets/stylesheets/iqvoc/components/_sidebars.scss +6 -2
  33. data/app/assets/stylesheets/iqvoc/components/_simplete.scss +38 -0
  34. data/app/assets/stylesheets/iqvoc/components/{_treeview.scss.erb → _treeview.scss} +12 -3
  35. data/app/assets/stylesheets/iqvoc/components/typeahead.scss +4 -2
  36. data/app/assets/stylesheets/iqvoc/hacks/_hacks.scss +1 -1
  37. data/app/assets/stylesheets/iqvoc/settings/_bootstrap-variables.scss +1 -853
  38. data/app/assets/stylesheets/iqvoc/settings/_fonts.scss +35 -35
  39. data/app/assets/stylesheets/iqvoc/settings/_manifest.scss +4 -0
  40. data/app/assets/stylesheets/iqvoc/{mixins → settings}/_mixins.scss +4 -0
  41. data/app/assets/stylesheets/{manifest.css.scss → manifest.scss} +1 -1
  42. data/app/controllers/collections/versions_controller.rb +1 -1
  43. data/app/controllers/collections_controller.rb +7 -4
  44. data/app/controllers/concepts/alphabetical_controller.rb +18 -16
  45. data/app/controllers/concepts/expired_controller.rb +9 -10
  46. data/app/controllers/concepts/hierarchical_controller.rb +1 -3
  47. data/app/controllers/concepts/scheme_controller.rb +6 -2
  48. data/app/controllers/concepts/untranslated_controller.rb +1 -1
  49. data/app/controllers/concepts/versions_controller.rb +2 -1
  50. data/app/controllers/concepts_controller.rb +13 -3
  51. data/app/controllers/concerns/controller_extensions.rb +37 -3
  52. data/app/controllers/dashboard_controller.rb +5 -1
  53. data/app/controllers/errors_controller.rb +8 -0
  54. data/app/controllers/exports_controller.rb +1 -1
  55. data/app/controllers/frontpage_controller.rb +8 -1
  56. data/app/controllers/hierarchy_controller.rb +8 -2
  57. data/app/controllers/imports_controller.rb +1 -1
  58. data/app/controllers/rdf_controller.rb +3 -0
  59. data/app/controllers/search_results_controller.rb +10 -1
  60. data/app/controllers/triplestore_sync_controller.rb +2 -2
  61. data/app/controllers/user_sessions_controller.rb +6 -4
  62. data/app/controllers/users_controller.rb +3 -3
  63. data/app/helpers/application_helper.rb +7 -4
  64. data/app/helpers/concepts_helper.rb +5 -4
  65. data/app/helpers/dashboard_helper.rb +7 -3
  66. data/app/helpers/form_helper.rb +1 -1
  67. data/app/helpers/link_helper.rb +7 -7
  68. data/app/helpers/navigation_helper.rb +34 -12
  69. data/app/helpers/rdf_helper.rb +14 -0
  70. data/app/helpers/search_results_helper.rb +1 -1
  71. data/app/models/ability.rb +3 -0
  72. data/app/models/abstract_user.rb +20 -8
  73. data/app/models/application_record.rb +3 -0
  74. data/app/models/collection/base.rb +9 -9
  75. data/app/models/collection/member/base.rb +6 -3
  76. data/app/models/concept/base.rb +112 -33
  77. data/app/models/concept/relation/base.rb +3 -3
  78. data/app/models/concept/skos/base.rb +8 -8
  79. data/app/models/concept/validations.rb +6 -4
  80. data/app/models/concerns/search_extension.rb +1 -1
  81. data/app/models/concerns/versioning.rb +12 -5
  82. data/app/models/configuration_setting.rb +1 -1
  83. data/app/models/dataset/adaptors/iqvoc/http_adaptor.rb +1 -1
  84. data/app/models/dataset/adaptors/iqvoc/label_adaptor.rb +1 -1
  85. data/app/models/dataset/adaptors/iqvoc/search_adaptor.rb +1 -1
  86. data/app/models/dataset/iqvoc_dataset.rb +3 -2
  87. data/app/models/export.rb +2 -2
  88. data/app/models/import.rb +1 -1
  89. data/app/models/label/base.rb +26 -7
  90. data/app/models/labeling/base.rb +1 -1
  91. data/app/models/labeling/skos/alt_label.rb +4 -0
  92. data/app/models/labeling/skos/base.rb +15 -11
  93. data/app/models/labeling/skos/hidden_label.rb +2 -2
  94. data/app/models/match/base.rb +5 -3
  95. data/app/models/notation/base.rb +4 -1
  96. data/app/models/note/annotated/base.rb +1 -1
  97. data/app/models/note/base.rb +23 -5
  98. data/app/models/user_session.rb +0 -3
  99. data/app/services/rdf_sync_service.rb +3 -3
  100. data/app/views/collections/_data.html.erb +16 -2
  101. data/app/views/collections/_form.html.erb +2 -2
  102. data/app/views/collections/_sidebar.html.erb +16 -8
  103. data/app/views/collections/show_published.html.erb +4 -4
  104. data/app/views/collections/show_unpublished.html.erb +6 -6
  105. data/app/views/concepts/_form.html.erb +2 -3
  106. data/app/views/concepts/alphabetical/_search_result.html.erb +12 -11
  107. data/app/views/concepts/alphabetical/index.html.erb +7 -2
  108. data/app/views/concepts/expired/index.html.erb +10 -5
  109. data/app/views/concepts/glance.html.erb +5 -4
  110. data/app/views/concepts/hierarchical/_treeview.html.erb +4 -1
  111. data/app/views/concepts/new.html.erb +2 -1
  112. data/app/views/concepts/scheme/edit.html.erb +1 -1
  113. data/app/views/concepts/scheme/show.html.erb +3 -5
  114. data/app/views/concepts/scheme/show.iqrdf +1 -6
  115. data/app/views/concepts/show_published.html.erb +4 -4
  116. data/app/views/concepts/show_unpublished.html.erb +6 -6
  117. data/app/views/concepts/sidebars/_plural.html.erb +7 -2
  118. data/app/views/concepts/sidebars/_singular.html.erb +19 -10
  119. data/app/views/dashboard/_sidebar.html.erb +3 -0
  120. data/app/views/dashboard/_table.html.erb +20 -9
  121. data/app/views/dashboard/glance.html.erb +6 -5
  122. data/app/views/dashboard/index.html.erb +4 -1
  123. data/app/views/errors/access_denied.html.erb +17 -2
  124. data/app/views/errors/not_found.html.erb +17 -3
  125. data/app/views/errors/server_error.html.erb +37 -0
  126. data/app/views/frontpage/index.html.erb +28 -7
  127. data/app/views/instance_configuration/index.html.erb +4 -4
  128. data/app/views/kaminari/_first_page.html.erb +13 -0
  129. data/app/views/kaminari/_gap.html.erb +10 -0
  130. data/app/views/kaminari/_last_page.html.erb +13 -0
  131. data/app/views/kaminari/_next_page.html.erb +13 -0
  132. data/app/views/kaminari/_page.html.erb +18 -0
  133. data/app/views/kaminari/_paginator.html.erb +25 -0
  134. data/app/views/kaminari/_prev_page.html.erb +13 -0
  135. data/app/views/layouts/_controls.html.erb +30 -27
  136. data/app/views/layouts/_navigation.html.erb +15 -15
  137. data/app/views/layouts/_sections.html.erb +3 -1
  138. data/app/views/layouts/_user_navigation.html.erb +24 -34
  139. data/app/views/layouts/application.html.erb +41 -41
  140. data/app/views/pages/components.html.erb +5 -5
  141. data/app/views/pages/version.html.erb +12 -14
  142. data/app/views/partials/collection/_member.html.erb +1 -1
  143. data/app/views/partials/collection/_new_link_base.html.erb +5 -3
  144. data/app/views/partials/concept/_new_link_base.html.erb +5 -3
  145. data/app/views/partials/concept/relation/_base.html.erb +4 -4
  146. data/app/views/partials/concept/relation/skos/_narrower.html.erb +1 -1
  147. data/app/views/partials/concept/relation/skos/broader/_mono.html.erb +2 -2
  148. data/app/views/partials/concept/relation/skos/broader/_poly.html.erb +2 -2
  149. data/app/views/partials/labeling/skos/_base.html.erb +1 -1
  150. data/app/views/partials/labeling/skos/_edit_base.html.erb +5 -2
  151. data/app/views/partials/labeling/skos/_search_result.html.erb +3 -0
  152. data/app/views/partials/match/_edit_base.html.erb +1 -1
  153. data/app/views/partials/match/_panel.html.erb +2 -2
  154. data/app/views/partials/notation/_base.html.erb +1 -1
  155. data/app/views/partials/notation/_edit_base.html.erb +1 -1
  156. data/app/views/partials/note/_edit_base.html.erb +19 -6
  157. data/app/views/partials/note/_note.html.erb +1 -1
  158. data/app/views/partials/note/_search_result.html.erb +1 -1
  159. data/app/views/partials/note/skos/_edit_change_note.html.erb +1 -0
  160. data/app/views/partials/note/skos/change_note/_search_result.html.erb +1 -1
  161. data/app/views/partials/note/skos/definition/_search_result.html.erb +1 -1
  162. data/app/views/search_results/_form.html.erb +4 -4
  163. data/app/views/search_results/_result_list.html.erb +15 -0
  164. data/app/views/search_results/_sidebar.html.erb +9 -2
  165. data/app/views/search_results/index.html.erb +1 -11
  166. data/app/views/search_results/index.iqrdf +2 -2
  167. data/app/views/search_results/sections/_change_note.html.erb +8 -8
  168. data/app/views/search_results/sections/_collection.html.erb +2 -2
  169. data/app/views/search_results/sections/_datasets.html.erb +9 -6
  170. data/app/views/search_results/sections/_klass.html.erb +2 -2
  171. data/app/views/search_results/sections/_languages.html.erb +11 -8
  172. data/app/views/search_results/sections/_mode.html.erb +2 -2
  173. data/app/views/search_results/sections/_note.html.erb +1 -1
  174. data/app/views/search_results/sections/_options.html.erb +10 -0
  175. data/app/views/search_results/sections/_terms.html.erb +10 -11
  176. data/app/views/search_results/sections/_type.html.erb +14 -11
  177. data/app/views/triplestore_sync/index.html.erb +1 -1
  178. data/app/views/users/_form.html.erb +3 -1
  179. data/app/views/users/index.html.erb +8 -5
  180. data/bin/bundle +3 -0
  181. data/bin/delayed_job +5 -0
  182. data/bin/rails +4 -0
  183. data/bin/rake +4 -0
  184. data/bin/setup +36 -0
  185. data/bin/update +31 -0
  186. data/bin/yarn +17 -0
  187. data/config/application.rb +25 -33
  188. data/config/boot.rb +3 -18
  189. data/config/cable.yml +10 -0
  190. data/config/database.template.yml +3 -3
  191. data/config/database.yml +15 -24
  192. data/config/database.yml.mysql +7 -7
  193. data/config/database.yml.postgresql +12 -9
  194. data/config/engine.rb +4 -11
  195. data/config/environment.rb +4 -20
  196. data/config/environments/heroku.rb +0 -13
  197. data/config/initializers/apipie.rb +2 -0
  198. data/config/initializers/application_controller_renderer.rb +8 -0
  199. data/config/initializers/backtrace_silencers.rb +4 -19
  200. data/config/initializers/content_security_policy.rb +30 -0
  201. data/config/initializers/cookies_serializer.rb +2 -0
  202. data/config/initializers/delayed_job.rb +0 -1
  203. data/config/initializers/filter_parameter_logging.rb +3 -1
  204. data/config/initializers/inflections.rb +0 -16
  205. data/config/initializers/iqvoc.rb +0 -2
  206. data/config/initializers/linked_data.rb +5 -0
  207. data/config/initializers/mime_types.rb +0 -16
  208. data/config/initializers/permissions_policy.rb +11 -0
  209. data/config/initializers/session_store.rb +0 -16
  210. data/config/initializers/wrap_parameters.rb +4 -4
  211. data/config/initializers/zeitwerk.rb +6 -0
  212. data/config/locales/activerecord.de.yml +13 -9
  213. data/config/locales/activerecord.en.yml +5 -0
  214. data/config/locales/de.yml +32 -20
  215. data/config/locales/en.yml +20 -4
  216. data/config/puma.rb +43 -0
  217. data/config/routes.rb +3 -0
  218. data/config/secrets.yml +24 -0
  219. data/config/storage.yml +34 -0
  220. data/db/migrate/20100927101502_create_schema.rb +1 -1
  221. data/db/migrate/20101125141218_add_collection_tables.rb +1 -1
  222. data/db/migrate/20101129161528_add_type_to_collections.rb +1 -1
  223. data/db/migrate/20101202094602_add_origin_to_collections.rb +1 -1
  224. data/db/migrate/20101202135420_rename_collection_contents_to_collection_members.rb +1 -1
  225. data/db/migrate/20101208103531_add_type_to_collection_contents.rb +1 -1
  226. data/db/migrate/20101210153916_add_indexes_to_collections.rb +1 -1
  227. data/db/migrate/20110204121244_create_collection_labels.rb +1 -1
  228. data/db/migrate/20110208084250_change_origin_lengths.rb +1 -1
  229. data/db/migrate/20110328124300_discard_collection_specifics.rb +1 -1
  230. data/db/migrate/20110408120357_remove_classifications_and_classifiers.rb +1 -1
  231. data/db/migrate/20110408120740_remove_xl_specfic_stuff.rb +1 -1
  232. data/db/migrate/20110420133640_change_value_in_notes.rb +1 -1
  233. data/db/migrate/20110427120534_add_published_at_to_labels.rb +1 -1
  234. data/db/migrate/20110510162719_use_mono_hierarchy_instead_of_poly_hierarchy.rb +1 -1
  235. data/db/migrate/20110512132624_extend_notes_value_field_length.rb +1 -1
  236. data/db/migrate/20110525103100_separate_note_annotation_predicates.rb +1 -1
  237. data/db/migrate/20110615134040_change_umt_note_annotations_to_dct.rb +1 -1
  238. data/db/migrate/20120119000000_create_configuration_settings.rb +1 -1
  239. data/db/migrate/20120201120736_add_top_term_to_concepts.rb +1 -1
  240. data/db/migrate/20120326102037_add_rank_to_concept_relations.rb +1 -1
  241. data/db/migrate/20130227145825_fix_collection_type.rb +1 -1
  242. data/db/migrate/20130315093255_add_notations.rb +1 -1
  243. data/db/migrate/20130315141952_add_indexes_to_notations.rb +1 -1
  244. data/db/migrate/20130418093837_add_language_to_note_annotations.rb +1 -1
  245. data/db/migrate/20130502151221_fix_collection_member_types.rb +1 -1
  246. data/db/migrate/20130508103137_adjust_note_languages_setting.rb +2 -2
  247. data/db/migrate/20131220134356_create_delayed_jobs.rb +1 -1
  248. data/db/migrate/20131220144601_create_imports.rb +1 -1
  249. data/db/migrate/20140423095147_create_exports.rb +1 -1
  250. data/db/migrate/20140425130615_add_fk_indexes_to_exports_and_imports.rb +1 -1
  251. data/db/migrate/20140505144919_add_import_file_to_imports.rb +1 -1
  252. data/db/migrate/20140506073428_add_missing_imports_attributes.rb +1 -1
  253. data/db/migrate/20140506133619_add_namespace_to_exports.rb +1 -1
  254. data/db/migrate/20140730132113_add_type_to_users.rb +1 -1
  255. data/db/migrate/20140807072457_create_job_relations.rb +1 -1
  256. data/db/migrate/20140807123413_add_response_error_to_job_relation.rb +1 -1
  257. data/db/migrate/20141204151558_add_foreign_key_constraints.rb +1 -1
  258. data/db/migrate/20150316103756_delayed_jobs_optimizations.rb +1 -1
  259. data/db/migrate/20150317162953_drop_job_relation.rb +1 -1
  260. data/db/migrate/20170608093748_extend_job_output_log.rb +1 -1
  261. data/db/migrate/20170626074649_add_note_annotations_index.rb +6 -2
  262. data/db/migrate/20180430163647_utf8mb4_conversion.rb +122 -0
  263. data/db/migrate/20180525135715_fix_note_annotations_index.rb +6 -0
  264. data/db/migrate/20190403133600_change_collation.rb +39 -0
  265. data/db/migrate/20200220134024_add_position_to_notes.rb +5 -0
  266. data/db/migrate/20200529053158_extend_users.rb +14 -0
  267. data/db/migrate/20200901143030_add_collection_type_index.rb +5 -0
  268. data/db/migrate/20220107114201_add_fk_constraint_to_active_storage_attachments_for_blob_id.active_storage.rb +10 -0
  269. data/db/schema.rb +133 -137
  270. data/db/seeds.rb +4 -4
  271. data/iqvoc.gemspec +20 -19
  272. data/lib/iqvoc/configuration/core.rb +10 -5
  273. data/lib/iqvoc/configuration/instance_configuration.rb +1 -1
  274. data/lib/iqvoc/configuration/navigation.rb +6 -0
  275. data/lib/iqvoc/environments/development.rb +44 -51
  276. data/lib/iqvoc/environments/production.rb +64 -34
  277. data/lib/iqvoc/environments/test.rb +22 -13
  278. data/lib/iqvoc/version.rb +1 -1
  279. data/lib/tasks/cleanup.rake +37 -0
  280. data/lib/tasks/db.rake +32 -0
  281. data/lib/tasks/sync.rake +1 -1
  282. data/test/authentication.rb +1 -1
  283. data/test/controllers/concepts_movement_controller_test.rb +41 -36
  284. data/test/controllers/hierarchy_test.rb +42 -47
  285. data/test/controllers/rdf_rendering_test.rb +2 -4
  286. data/test/controllers/reverse_match_test.rb +49 -39
  287. data/test/integration/authentication_test.rb +1 -1
  288. data/test/integration/browse_concepts_and_labels_test.rb +3 -1
  289. data/test/integration/client_edit_concept_test.rb +2 -2
  290. data/test/integration/concept_collection_assignment_test.rb +6 -6
  291. data/test/integration/dashboard_test.rb +2 -2
  292. data/test/integration/export_test.rb +2 -2
  293. data/test/integration/import_test.rb +2 -2
  294. data/test/integration/instance_configuration_browsing_test.rb +2 -2
  295. data/test/integration/navigation_test.rb +30 -3
  296. data/test/integration/note_annotations_test.rb +1 -1
  297. data/test/integration/search_test.rb +5 -5
  298. data/test/integration/user_management_test.rb +2 -2
  299. data/test/integration_test_helper.rb +3 -2
  300. data/test/models/hygiene_test.rb +1 -1
  301. data/test/models/rdf_sync_test.rb +3 -3
  302. data/test/models/zeitwerk_compliance_test.rb +7 -0
  303. data/test/test_helper.rb +0 -5
  304. metadata +189 -675
  305. data/app/assets/javascripts/iqvoc/concept_mapper.js +0 -73
  306. data/app/assets/javascripts/iqvoc/entityselect_qualified.js.erb +0 -45
  307. data/app/assets/javascripts/iqvoc/moving_sidebar.js +0 -37
  308. data/app/assets/javascripts/iqvoc/onebox.js.erb +0 -62
  309. data/app/assets/javascripts/iqvoc/quicksearch.js +0 -59
  310. data/app/assets/stylesheets/iqvoc/ie_fixes.css.scss +0 -6
  311. data/app/models/concerns/deep_cloning.rb +0 -94
  312. data/config/initializers/assets.rb +0 -5
  313. data/config/travis/database.yml.mysql +0 -9
  314. data/config/travis/database.yml.postgresql +0 -7
  315. data/config/travis/database.yml.sqlite +0 -5
  316. data/public/404.html +0 -58
  317. data/public/422.html +0 -58
  318. data/public/500.html +0 -57
  319. data/public/favicon.ico +0 -0
  320. data/public/robots.txt +0 -5
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