ipynbdiff 0.3.5 → 0.3.9
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- checksums.yaml +4 -4
- data/.VERSION.TMPL +5 -0
- data/.gitlab-ci.yml +39 -0
- data/Gemfile +2 -0
- data/Gemfile.lock +3 -1
- data/README.md +6 -6
- data/ipynbdiff.gemspec +5 -3
- data/lib/ipynbdiff.rb +7 -7
- data/lib/output_transformer.rb +65 -0
- data/lib/transformer.rb +10 -36
- data/lib/version.rb +5 -0
- metadata +18 -8
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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metadata.gz: 4a0b43a4e07caec84f0a356fddf739dcbfd8a851031414a2d3dd8de52d399ba7
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4
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data.tar.gz: efa08ed43c9afcbbac0d895d2bc7306601581609cbbf51398d1a8f0b7e7d5171
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: df6258024f5bad0cd1a74be669d9156910ddc08cd626a9785664367fa599ef2f53da8e71276d5126a0858c5446efd0e33c6ba84c192b8c5b628f40f6f101c5ab
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7
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+
data.tar.gz: c64d0ba535a8b5b3d20df51b7937f514ef188eb7a93f2204b27ad2fd1cbdc13401fe2564987fc559e26f66bd5d55044c7fc1b57dc1958f0fccf624f94c9ab1af
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data/.VERSION.TMPL
ADDED
data/.gitlab-ci.yml
ADDED
@@ -0,0 +1,39 @@
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image: ruby:2.7
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stages:
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- test
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- build
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- rubygems
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specs:
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stage: test
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script:
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- bundle install
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- bundle exec rspec
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build-gem:
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stage: build
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script:
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- bundle install
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- cat .VERSION.TMPL | sed s/GEM_VERSION/$CI_COMMIT_REF_NAME/ > lib/version.rb
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- gem build ipynbdiff.gemspec
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artifacts:
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paths:
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- ipynbdiff-$CI_COMMIT_REF_NAME.gem
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needs:
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- specs
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deploy-gem:
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stage: rubygems
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script:
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- bundle install
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- gem push ipynbdiff-$CI_COMMIT_TAG.gem
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only:
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- master
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- tags
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needs:
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- build-gem
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when: manual
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data/Gemfile
CHANGED
data/Gemfile.lock
CHANGED
@@ -1,4 +1,5 @@
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1
1
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GEM
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2
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remote: https://rubygems.org/
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specs:
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3
4
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diff-lcs (1.4.4)
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4
5
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diffy (3.3.0)
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@@ -18,6 +19,7 @@ GEM
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rspec-support (3.10.2)
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PLATFORMS
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ruby
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x86_64-darwin-20
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DEPENDENCIES
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@@ -26,4 +28,4 @@ DEPENDENCIES
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rspec (= 3.10.0)
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BUNDLED WITH
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-
2.2.
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2.2.29
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data/README.md
CHANGED
@@ -28,16 +28,16 @@ Options:
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```ruby
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@default_transform_options = {
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-
preprocess_input:
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preprocess_input: true, # Whether the input should be transformed
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write_output_to: nil, # Pass a path to save the output to a file
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format: :text, # These are the formats Diffy accepts https://github.com/samg/diffy
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-
sources_are_files:
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-
raise_if_invalid_notebook:
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sources_are_files: false, # Weather to use the from/to as string or path to a file
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raise_if_invalid_notebook: false, # Raises an error if the notebooks are invalid, otherwise returns nil
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transform_options: @default_transform_options, # See below for transform options
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diff_opts: {
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-
include_diff_info:
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include_diff_info: false # These are passed to Diffy https://github.com/samg/diffy
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}
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-
}
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}
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```
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### Transforming the notebooks
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@@ -52,7 +52,7 @@ Options:
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```ruby
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@default_transform_options = {
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55
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-
include_metadata:
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55
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+
include_metadata: false, # Whether to include or not the notebook metadata (kernel, language, etc)
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56
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cell_decorator: :html # :html is useful to add styling with css, :percent is better for text format
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}
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```
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data/ipynbdiff.gemspec
CHANGED
@@ -1,8 +1,10 @@
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1
1
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# frozen_string_literal: true
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2
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require_relative "lib/version"
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5
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Gem::Specification.new do |s|
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s.name = 'ipynbdiff'
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-
s.version =
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7
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s.version = IpynbDiff::VERSION
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s.summary = 'Human Readable diffs for Jupyter Notebooks'
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s.description = 'Better diff for Jupyter Notebooks by first preprocessing them and removing clutter'
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s.authors = ['Eduardo Bonet']
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@@ -18,8 +20,8 @@ Gem::Specification.new do |s|
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s.require_paths = ['lib']
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-
s.add_runtime_dependency 'diffy', '3.3
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-
s.add_runtime_dependency 'json', '2.5.1'
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+
s.add_runtime_dependency 'diffy', '~> 3.3'
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s.add_runtime_dependency 'json', '~> 2.5', '>= 2.5.1'
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s.add_development_dependency 'bundler', '~> 2.2'
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s.add_development_dependency 'guard-rspec'
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data/lib/ipynbdiff.rb
CHANGED
@@ -6,19 +6,19 @@ module IpynbDiff
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6
6
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require 'diffy'
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7
7
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|
8
8
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@default_transform_options = {
|
9
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-
include_metadata:
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9
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+
include_metadata: false,
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10
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cell_decorator: :html
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}
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@default_diff_options = {
|
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-
preprocess_input:
|
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preprocess_input: true,
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write_output_to: nil,
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format: :text,
|
17
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-
sources_are_files:
|
18
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-
raise_if_invalid_notebook:
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17
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+
sources_are_files: false,
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18
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+
raise_if_invalid_notebook: false,
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19
19
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transform_options: @default_transform_options,
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20
20
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diff_opts: {
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21
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-
include_diff_info:
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+
include_diff_info: false
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}
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}.freeze
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@@ -27,7 +27,7 @@ module IpynbDiff
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prep = to_prepare
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29
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prep = File.read(prep) if options[:sources_are_files]
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30
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-
prep = transform(prep, raise_errors:
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+
prep = transform(prep, raise_errors: true, options: options[:transform_options]) if options[:preprocess_input]
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31
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prep
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32
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end
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@@ -48,7 +48,7 @@ module IpynbDiff
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48
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raise if options[:raise_if_invalid_notebook]
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49
49
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end
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50
50
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|
51
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-
def self.transform(notebook, raise_errors:
|
51
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+
def self.transform(notebook, raise_errors: false, options: @default_transform_options)
|
52
52
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options = @default_transform_options.merge(options)
|
53
53
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|
54
54
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Transformer.new(**options).transform(notebook)
|
@@ -0,0 +1,65 @@
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1
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# frozen_string_literal: true
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2
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module IpynbDiff
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4
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|
5
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# Transforms Jupyter output data into markdown
|
6
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+
class OutputTransformer
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7
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+
|
8
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ORDERED_KEYS = {
|
9
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+
'execute_result' => %w[image/png image/svg+xml image/jpeg text/markdown text/latex text/plain],
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10
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+
'display_data' => %w[image/png image/svg+xml image/jpeg text/markdown text/latex]
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11
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+
}.freeze
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12
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+
|
13
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def transform(output)
|
14
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case (output_type = output['output_type'])
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15
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when 'error'
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16
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transform_error(output['traceback'])
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when 'execute_result', 'display_data'
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18
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transform_non_error(ORDERED_KEYS[output_type], output['data'])
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19
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end
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20
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end
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21
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def transform_error(traceback)
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traceback.map do |t|
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t.split("\n").map do |line|
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line.gsub(/\[[0-9][0-9;]*m/, '').sub("\u001B", ' ').gsub(/\u001B/, '').rstrip << "\n"
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26
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end
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27
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end
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28
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end
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29
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def transform_non_error(accepted_keys, elements)
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accepted_keys.map do |key|
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transform_element(key, elements[key]) if elements.key?(key)
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33
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end.flatten
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34
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end
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35
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def transform_element(output_type, output_element)
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37
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case output_type
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when 'image/png', 'image/jpeg'
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39
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transform_image(output_type, output_element)
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40
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when 'image/svg+xml'
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41
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transform_svg(output_element)
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when 'text/markdown', 'text/latex', 'text/plain'
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transform_text(output_element)
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+
end
|
45
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+
end
|
46
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+
|
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def transform_image(image_type, image_content)
|
48
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[" ![](data:#{image_type};base64,#{image_content.gsub("\n", '')})", "\n"]
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49
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+
end
|
50
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+
|
51
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def transform_svg(image_content)
|
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lines = image_content.is_a?(Array) ? image_content : [image_content]
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53
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+
|
54
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single_line = lines.map(&:strip).join('').gsub(/\s+/, ' ')
|
55
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+
|
56
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[" ![](data:image/svg+xml;utf8,#{single_line})", "\n"]
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57
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+
end
|
58
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+
|
59
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def transform_text(text_content)
|
60
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+
lines = text_content.is_a?(Array) ? text_content : [text_content]
|
61
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+
|
62
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+
lines.map { |line| " #{line}" }.append("\n")
|
63
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+
end
|
64
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+
end
|
65
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+
end
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data/lib/transformer.rb
CHANGED
@@ -8,19 +8,22 @@ module IpynbDiff
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class Transformer
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require 'json'
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require 'yaml'
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require 'output_transformer'
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12
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|
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@cell_decorator = :html
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13
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-
@include_metadata =
|
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@include_metadata = true
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14
15
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15
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-
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|
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def initialize(include_metadata: true, cell_decorator: :html)
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16
18
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@include_metadata = include_metadata
|
17
19
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@cell_decorator = cell_decorator
|
20
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+
@output_transformer = OutputTransformer.new
|
18
21
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end
|
19
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20
23
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def validate_notebook(notebook)
|
21
24
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notebook_json = JSON.parse(notebook)
|
22
25
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|
23
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-
return notebook_json if notebook_json.key?('cells')
|
26
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+
return notebook_json if notebook_json.key?('cells')
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24
27
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25
28
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raise InvalidNotebookError
|
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rescue JSON::ParserError
|
@@ -66,51 +69,22 @@ module IpynbDiff
|
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66
69
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|
67
70
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def transform_code_cell(cell, notebook)
|
68
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[
|
69
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-
%(``` #{notebook
|
72
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%(``` #{notebook.dig('metadata', 'kernelspec', 'language') || ''}\n),
|
70
73
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*cell['source'],
|
71
74
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"\n```\n",
|
72
75
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*cell['outputs'].map { |output| transform_output(output) }
|
73
76
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]
|
74
77
|
end
|
75
78
|
|
76
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-
def format_traceback(traceback)
|
77
|
-
traceback.map do |t|
|
78
|
-
t.split("\n").map do |line|
|
79
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-
line.gsub(/\[[0-9][0-9;]*m/, '').sub("\u001B", ' ').gsub(/\u001B/, '').rstrip << "\n"
|
80
|
-
end
|
81
|
-
end
|
82
|
-
end
|
83
|
-
|
84
|
-
def transform_execute_result(output)
|
85
|
-
output['data']['text/plain'].map { |line| " #{line}" }.append("\n")
|
86
|
-
end
|
87
|
-
|
88
|
-
def transform_image_result(output)
|
89
|
-
if output['data'].key?('image/png')
|
90
|
-
["![](data:image/png;base64,#{output['data']['image/png'].gsub("\n", '')})", "\n"]
|
91
|
-
end
|
92
|
-
end
|
93
|
-
|
94
|
-
def transform_error_result(output)
|
95
|
-
format_traceback(output['traceback'])
|
96
|
-
end
|
97
|
-
|
98
79
|
def transform_output(output)
|
99
|
-
transformed =
|
100
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-
case output['output_type']
|
101
|
-
when 'execute_result'
|
102
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-
transform_execute_result(output)
|
103
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-
when 'display_data'
|
104
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-
transform_image_result(output)
|
105
|
-
when 'error'
|
106
|
-
transform_error_result(output)
|
107
|
-
end
|
80
|
+
transformed = @output_transformer.transform(output)
|
108
81
|
|
109
82
|
decorate_output(transformed, output).join('') if transformed
|
110
83
|
end
|
111
84
|
|
112
85
|
def transform_text_cell(cell)
|
113
|
-
cell['source']
|
86
|
+
source = cell['source']
|
87
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+
(source.is_a?(Array) ? source : [source]).append("\n")
|
114
88
|
end
|
115
89
|
|
116
90
|
def transform_metadata(notebook_json)
|
data/lib/version.rb
ADDED
metadata
CHANGED
@@ -1,41 +1,47 @@
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|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: ipynbdiff
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.3.
|
4
|
+
version: 0.3.9
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- Eduardo Bonet
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date: 2021-
|
11
|
+
date: 2021-12-07 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: diffy
|
15
15
|
requirement: !ruby/object:Gem::Requirement
|
16
16
|
requirements:
|
17
|
-
- -
|
17
|
+
- - "~>"
|
18
18
|
- !ruby/object:Gem::Version
|
19
|
-
version: 3.3
|
19
|
+
version: '3.3'
|
20
20
|
type: :runtime
|
21
21
|
prerelease: false
|
22
22
|
version_requirements: !ruby/object:Gem::Requirement
|
23
23
|
requirements:
|
24
|
-
- -
|
24
|
+
- - "~>"
|
25
25
|
- !ruby/object:Gem::Version
|
26
|
-
version: 3.3
|
26
|
+
version: '3.3'
|
27
27
|
- !ruby/object:Gem::Dependency
|
28
28
|
name: json
|
29
29
|
requirement: !ruby/object:Gem::Requirement
|
30
30
|
requirements:
|
31
|
-
- -
|
31
|
+
- - "~>"
|
32
|
+
- !ruby/object:Gem::Version
|
33
|
+
version: '2.5'
|
34
|
+
- - ">="
|
32
35
|
- !ruby/object:Gem::Version
|
33
36
|
version: 2.5.1
|
34
37
|
type: :runtime
|
35
38
|
prerelease: false
|
36
39
|
version_requirements: !ruby/object:Gem::Requirement
|
37
40
|
requirements:
|
38
|
-
- -
|
41
|
+
- - "~>"
|
42
|
+
- !ruby/object:Gem::Version
|
43
|
+
version: '2.5'
|
44
|
+
- - ">="
|
39
45
|
- !ruby/object:Gem::Version
|
40
46
|
version: 2.5.1
|
41
47
|
- !ruby/object:Gem::Dependency
|
@@ -115,13 +121,17 @@ executables: []
|
|
115
121
|
extensions: []
|
116
122
|
extra_rdoc_files: []
|
117
123
|
files:
|
124
|
+
- ".VERSION.TMPL"
|
118
125
|
- ".gitignore"
|
126
|
+
- ".gitlab-ci.yml"
|
119
127
|
- Gemfile
|
120
128
|
- Gemfile.lock
|
121
129
|
- README.md
|
122
130
|
- ipynbdiff.gemspec
|
123
131
|
- lib/ipynbdiff.rb
|
132
|
+
- lib/output_transformer.rb
|
124
133
|
- lib/transformer.rb
|
134
|
+
- lib/version.rb
|
125
135
|
homepage: https://gitlab.com/gitlab-org/incubation-engineering/mlops/rb-ipynbdiff
|
126
136
|
licenses:
|
127
137
|
- MIT
|