ion_orders_engine_mockingjay 1.0.1.SNAPSHOT

data/app/views/reference/data_lists/_form.html.erb

@@ -0,0 +1,23 @@
+<%= simple_form_for [:reference, @data_listable, @data_list], html: { class: 'form-horizontal' } do |f| %>
+
+<%= f.error_notification %>
+
+<div class="form-inputs">
+  <%= f.input :display_name, hint: 'This is the display friendly name you would see beside a drop down list as a label.'  %>
+  <%= f.input :option_class_name, hint: 'This is the name of the class each option in this list should be instantiated as, such as "LabGroup" or "AllergyReactionType", etc.'  %>
+  <%= f.input :code_name, hint: 'An internal code or tag name for this list.' %>
+  <%= f.input :code_number, hint: 'A generic holder for a numeric code or sequence number.' %>
+
+  <h4>Metadata</h4>
+
+  <%= f.input :metadata_description, as: :text, label: 'Description', input_html: { rows: 6 },
+              hint: 'Provide your notes for testing here, such as why this Data List exists.' %>
+
+</div>
+
+<div class="form-actions">
+	<%= submit_button(f, @data_list) %>
+	<%= cancel_button [:reference, @data_listable, @data_list] %>
+</div>
+
+<% end %>

data/app/views/reference/data_lists/edit.html.erb

@@ -0,0 +1,6 @@
+<div class="page-header">
+  <h1><%= edit_resource_heading DataList %></h1>
+</div>
+
+<%= render :partial => 'form' %>
+

data/app/views/reference/data_lists/index.html.erb

@@ -0,0 +1,31 @@
+<div class="page-header">
+  <h1><%= index_resource_heading DataList %></h1>
+</div>
+<table class="table table-striped">
+  <thead>
+    <tr>
+      <th>Display Name</th>
+      <th>Code Name</th>
+      <th>Code Number</th>
+      <th><%= actions_table_heading %></th>
+    </tr>
+  </thead>
+  <tbody>
+    <% @data_lists.each do |data_list| %>
+      <tr>
+        <td><%= data_list.display_name %></td>
+        <td><%= data_list.code_name %></td>
+        <td><%= data_list.code_number %></td>
+        <td>
+          <%= show_button_link [:reference, @data_listable, data_list], as_mini: true %>
+          <%= edit_button_link [:edit, :reference, @data_listable, data_list], as_mini: true %>
+          <%= destroy_button_link [:reference, @data_listable, data_list], as_mini: true %>
+        </td>
+      </tr>
+    <% end %>
+  </tbody>
+</table>
+
+<%= back_button_link [:reference, @data_listable] %>
+<%= new_button_link [:new, :reference, @data_listable, :data_list] %>
+

data/app/views/reference/data_lists/new.html.erb

@@ -0,0 +1,6 @@
+<div class="page-header">
+  <h1><%= new_resource_heading DataList %></h1>
+</div>
+
+<%= render :partial => 'form' %>
+

data/app/views/reference/data_lists/show.html.erb

@@ -0,0 +1,55 @@
+<div class="page-header">
+  <h1><%=   if @data_list
+                show_resource_heading(DataList, @data_list.short_title)
+            else
+              show_resource_heading(DataList, 'nested list')
+            end %>
+  </h1>
+</div>
+
+<% if @data_list %>
+
+<dl class="dl-horizontal">
+  <% display_for @data_list do | r |%>
+	  <%= r.attribute :display_name %>
+      <%= r.attribute :option_class_name %>
+      <%= r.attribute :code_name %>
+      <%= r.attribute :code_number %>
+      <%= r.attribute :metadata_description %>
+  <% end %>
+</dl>
+
+
+<div class="form-actions">
+  <%= if @data_listable.instance_of?(DataOption)
+        back_button_link [:reference, @data_listable.data_list, @data_listable]
+      else
+        back_button_link [:reference, @data_listable, :data_lists]
+    end
+  %>
+  <%= edit_button_link [:edit, :reference, @data_listable, @data_list] %>
+  <%= destroy_button_link [:reference, @data_listable, @data_list] %>
+  <%= add_another_button_link([:new, :reference, @data_listable, :data_list], class: 'pull-right') unless @data_listable.instance_of?(DataOption) %>
+
+</div>
+
+<br/><br/>
+<%= render partial: 'data_options', locals: {data_options: @data_list.data_options} %>
+
+
+<% else %>
+
+    Currently, there is no nested Data List for this <%= @data_listable.class.to_s.titleize %>.
+    <br/><br/>
+    You can use nested lists to effectively build a tree of lists and options to describe your
+    reference data structure hierarchy.
+
+    <br/><br/>
+
+    <%= add_button_link [:new, :reference, @data_listable, :nested_data_list]  %>
+    <%= cancel_button [:reference, @data_listable.data_list, @data_listable] %>
+
+<% end %>
+
+
+

data/app/views/reference/data_options/_form.html.erb

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+<%= simple_form_for [:reference, @data_list, @data_option], html: { class: 'form-horizontal' } do |f| %>
+
+<%= f.error_notification %>
+
+<div class="form-inputs">
+  <%= f.input :display_name %>
+  <%= f.input :code_name %>
+  <%= f.input :code_number %>
+
+  <h4>Metadata</h4>
+
+  <%= f.input :metadata_description, as: :text, label: 'Description', input_html: { rows: 6 },
+              hint: 'Provide your notes for testing here, such as why this Data Option exists.' %>
+
+</div>
+
+
+<div class="form-actions">
+	<%= submit_button(f, @data_option) %>
+	<%= cancel_button [:reference, @data_list, @data_option] %>
+</div>
+
+<% end %>

data/app/views/reference/data_options/edit.html.erb

@@ -0,0 +1,5 @@
+<div class="page-header">
+  <h1><%= edit_resource_heading DataOption %></h1>
+</div>
+
+<%= render :partial => 'form' %>

data/app/views/reference/data_options/index.html.erb

@@ -0,0 +1,38 @@
+<div class="page-header">
+  <h1><%= index_resource_heading(DataOption) %></h1>
+</div>
+<table class="table table-striped">
+  <thead>
+    <tr>
+      <th>Display Name</th>
+      <th>Code Name</th>
+      <th>Code Number</th>
+      <th><%= actions_table_heading %></th>
+    </tr>
+  </thead>
+  <tbody>
+    <% @data_options.each do |data_option| %>
+      <tr>
+        <td><%= data_option.display_name %></td>
+        <td><%= data_option.code_name %></td>
+        <td><%= data_option.code_number %></td>
+        <td>
+          <%= show_button_link [:reference, @data_list, data_option], as_mini: true %>
+          <%= edit_button_link [:edit, :reference, @data_list, data_option], as_mini: true %>
+          <%= destroy_button_link [:reference, @data_list, data_option], as_mini: true %>
+        </td>
+      </tr>
+    <% end %>
+  </tbody>
+</table>
+
+<br/><br/>
+
+<%= if @data_list.data_listable.instance_of?(DataOption)
+        back_button_link [:reference, @data_list.data_listable, :nested_data_list]
+    else
+        back_button_link [:reference, @data_list]
+  end
+%>
+<%= new_button_link [:new, :reference, @data_list, :data_option]  %>
+

data/app/views/reference/data_options/new.html.erb

@@ -0,0 +1,5 @@
+<div class="page-header">
+  <h1><%= new_resource_heading DataOption %></h1>
+</div>
+
+<%= render :partial => 'form' %>

data/app/views/reference/data_options/show.html.erb

@@ -0,0 +1,33 @@
+<div class="page-header">
+  <h1><%= show_resource_heading(DataOption, @data_option.short_title) %></h1>
+</div>
+
+<dl class="dl-horizontal">
+  <% display_for @data_option do | r |%>
+      <%= r.attribute :display_name %>
+      <%= r.attribute :code_name %>
+      <%= r.attribute :code_number %>
+      <%= r.attribute :metadata_description %>
+<% end %>
+
+</dl>
+
+
+<div class="form-actions">
+  <%= back_button_link [:reference, @data_list, :data_options] %>
+  <%= edit_button_link [:edit, :reference, @data_list, @data_option] %>
+  <%= destroy_button_link [:reference, @data_list, @data_option] %>
+</div>
+
+<div class="btn-group">
+	<%= link_to 'Nested Data List', [:reference, @data_option, :nested_data_list], class: 'btn' %>
+</div>
+
+
+<br/>
+<br/>
+
+<%= add_another_button_link [:new, :reference, @data_list, :data_option] %>
+
+
+

data/app/views/reference/data_sets/_form.html.erb

@@ -0,0 +1,25 @@
+<%= simple_form_for [:reference, @data_set], html: { class: 'form-horizontal' } do |f| %>
+
+<%= f.error_notification %>
+
+<div class="form-inputs">
+
+	<%= f.input :protected_record, as: :radio_buttons %>
+
+  <%= f.input :active, label: 'Active?', as: :radio_buttons %>
+
+  <%= f.input :name %>
+
+  <h4>Metadata</h4>
+
+	<%= f.input :metadata_description, as: :text, label: 'Description', input_html: { rows: 6 },
+		hint: 'Provide your notes for testing here, such as why this Data Set exists.' %>
+
+</div>
+
+<div class="form-actions">
+	<%= submit_button(f, @data_set) %>
+	<%= cancel_button [:reference, @data_set] %>
+</div>
+
+<% end %>

data/app/views/reference/data_sets/edit.html.erb

@@ -0,0 +1,5 @@
+<div class="page-header">
+  <h1><%= edit_resource_heading(DataSet) %></h1>
+</div>
+
+<%= render :partial => 'form' %>

data/app/views/reference/data_sets/index.html.erb

@@ -0,0 +1,40 @@
+<div class="page-header">
+  <h1><%= index_resource_heading(DataSet) %></h1>
+</div>
+
+<br/><br/>
+
+<table class="table table-striped">
+  <thead>
+    <tr>
+	  <th>DataSet ID</th>
+      <th>Name</th>
+      <th>Active</th>
+      <th><%= actions_table_heading %></th>
+    </tr>
+  </thead>
+  <tbody>
+    <% @data_sets.each do |data_set| %>
+      <tr>
+        <td>
+          <%=data_set.id %>
+          <% if data_set.protected_record? %>
+          <span class="label label-warning">protected</span>
+          <% end %>
+        </td>
+        <td><%=data_set.name %></td>
+        <td><%=data_set.active? %></td>
+        <td>
+          <%= show_button_link [:reference, data_set], as_mini: true %>
+          <%= edit_button_link [:edit, :reference, data_set], as_mini: true %>
+          <%= destroy_button_link [:reference, data_set], as_mini: true %>
+        </td>
+      </tr>
+    <% end %>
+  </tbody>
+</table>
+
+<%= new_button_link [:new, :reference, :data_set] %>
+
+<br/>
+

data/app/views/reference/data_sets/new.html.erb

@@ -0,0 +1,5 @@
+<div class="page-header">
+  <h1><%= new_resource_heading(DataSet) %></h1>
+</div>
+
+<%= render :partial => 'form' %>

data/app/views/reference/data_sets/show.html.erb

@@ -0,0 +1,38 @@
+<div class="page-header">
+  <h1><%= show_resource_heading(DataSet, @data_set.name) %></h1>
+</div>
+
+<dl class="dl-horizontal">
+  <% display_for @data_set do | r |%>
+	  <%= r.attribute :protected_record?  %>
+      <%= r.attribute :active, label: 'Active?' %>
+      <%= r.attribute :name %>
+
+	<h4>Metadata</h4>
+	<%#= go_button_link([:reference, @data_set, :metadata_keywords], as_mini: true, title: 'All Keywords') %>
+	<%#= r.attribute :metadata_keywords_csv, label: 'Keywords' %>
+	<%= r.attribute :metadata_description, label: 'Description' %>
+<% end %>
+</dl>
+
+
+<div class="form-actions">
+  <%= back_button_link [:reference, :data_sets] %>
+  <%= edit_button_link [:edit, :reference, @data_set] %>
+  <%= destroy_button_link [:reference, @data_set] %>
+</div>
+
+<div class="btn-group">
+  <%= link_to 'Data Lists', [:reference, @data_set, :data_lists], class: 'btn related' %>
+</div>
+
+
+
+<br/><br/>
+
+<%#= export_button @data_set %>
+
+<br/>
+
+
+

data/config/application.rb

@@ -0,0 +1,100 @@
+require File.expand_path('../boot', __FILE__)
+
+# Pick the frameworks you want:
+# require "active_record/railtie"
+# require "action_controller/railtie"
+# require "action_mailer/railtie"
+# require "active_resource/railtie"
+# require "sprockets/railtie"
+# require "rails/test_unit/railtie"
+require 'rails/all'
+
+if defined?(Bundler)
+  # If you precompile assets before deploying to production, use this line
+  Bundler.require(*Rails.groups(:assets => %w(development test)))
+  # If you want your assets lazily compiled in production, use this line
+  # Bundler.require(:default, :assets, Rails.env)
+end
+
+module Mockingjay
+  class Application < Rails::Application
+    # Settings in config/environments/* take precedence over those specified here.
+    # Application configuration should go into files in config/initializers
+    # -- all .rb files in that directory are automatically loaded.
+
+    # Custom directories with classes and modules you want to be autoloadable.
+    # Allow our modules of Concerns to be auto-loaded, per: https://gist.github.com/1014971
+    config.autoload_paths += %W(#{config.root}/app/models/concerns)
+    #config.autoload_paths += %W(#{config.root}/app/models/reference)
+    config.autoload_paths += Dir["#{config.root}/lib/"] # lib folder contents, like breadcrumbs builder
+
+    # Only load the plugins named here, in the order given (default is alphabetical).
+    # :all can be used as a placeholder for all plugins not explicitly named.
+    # config.plugins = [ :exception_notification, :ssl_requirement, :all ]
+
+    # Activate observers that should always be running.
+    # config.active_record.observers = :cacher, :garbage_collector, :forum_observer
+
+    # Set Time.zone default to the specified zone and make Active Record auto-convert to this zone.
+    # Run "rake -D time" for a list of tasks for finding time zone names. Default is UTC.
+    config.active_record.default_timezone = :local
+    config.active_record.time_zone_aware_attributes = false  
+
+    # The default locale is :en and all translations from config/locales/*.rb,yml are auto loaded.
+    # config.i18n.load_path += Dir[Rails.root.join('my', 'locales', '*.{rb,yml}').to_s]
+    # config.i18n.default_locale = :de
+
+    # Configure the default encoding used in templates for Ruby 1.9.
+    config.encoding = "utf-8"
+
+    # Configure sensitive parameters which will be filtered from the log file.
+    config.filter_parameters += [:password]
+
+    # Enable escaping HTML in JSON.
+    config.active_support.escape_html_entities_in_json = true
+
+    # Use SQL instead of Active Record's schema dumper when creating the database.
+    # This is necessary if your schema can't be completely dumped by the schema dumper,
+    # like if you have constraints or database-specific column types
+    # config.active_record.schema_format = :sql
+
+    # Enforce whitelist mode for mass assignment.
+    # This will create an empty whitelist of attributes available for mass-assignment for all models
+    # in your app. As such, your models will need to explicitly whitelist or blacklist accessible
+    # parameters by using an attr_accessible or attr_protected declaration.
+    config.active_record.whitelist_attributes = false
+
+    # Enable the asset pipeline
+    config.assets.enabled = true  # c07090: turned on since some resources were missing
+
+    # Version of your assets, change this if you want to expire all your assets
+    config.assets.version = '1.0'
+
+    config.generators do |g|
+      g.orm :active_record
+      g.template_engine :erb # :haml
+      g.test_framework :rspec, :fixture => true, :views => false
+      g.fixture_replacement :factory_girl, :dir => "spec/factories"
+    end
+
+    # We need to wait until after initialization to load new reference data into the database
+    # and then create Ruby reference class instances from that data. We wait until after
+    # initialization so that ActiveRecord and all our models are ready to go.
+    # Post initialization hook courtesy of: http://stackoverflow.com/a/10974025/535054
+    config.after_initialize do
+      if Reference::has_reference_tables? and !defined?(::Rake)
+        # --- LOAD THE DATA SET FLAT FILES INTO THE DATABASE ---
+        Rails.logger.info "Initializer: reference.rb: Loading reference data into database."
+        loader = Reference::Loader.new
+        loader.perform_import
+
+        # --- KICK OFF THE LOADING PROCESS ---
+        Rails.logger.info "Initializer: reference.rb: Loading reference model classes from database."
+        Reference::DataTypes.reload
+      end
+    end
+
+  end
+end
+
+

data/config/boot.rb

@@ -0,0 +1,6 @@
+require 'rubygems'
+
+# Set up gems listed in the Gemfile.
+ENV['BUNDLE_GEMFILE'] ||= File.expand_path('../../Gemfile', __FILE__)
+
+require 'bundler/setup' if File.exists?(ENV['BUNDLE_GEMFILE'])

data/config/database.yml

@@ -0,0 +1,25 @@
+# SQLite version 3.x
+#   gem install sqlite3
+#
+#   Ensure the SQLite 3 gem is defined in your Gemfile
+#   gem 'sqlite3'
+development:
+  adapter: sqlite3
+  database: db/development.sqlite3
+  pool: 5
+  timeout: 5000
+
+# Warning: The database defined as "test" will be erased and
+# re-generated from your development database when you run "rake".
+# Do not set this db to the same as development or production.
+test:
+  adapter: sqlite3
+  database: db/test.sqlite3
+  pool: 5
+  timeout: 5000
+
+production:
+  adapter: sqlite3
+  database: db/production.sqlite3
+  pool: 5
+  timeout: 5000

data/config/environment.rb

@@ -0,0 +1,5 @@
+# Load the rails application
+require File.expand_path('../application', __FILE__)
+
+# Initialize the rails application
+Mockingjay::Application.initialize!

data/config/environments/development.rb

@@ -0,0 +1,42 @@
+Mockingjay::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # In the development environment your application's code is reloaded on
+  # every request. This slows down response time but is perfect for development
+  # since you don't have to restart the web server when you make code changes.
+  config.cache_classes = false
+
+  # Log error messages when you accidentally call methods on nil.
+  config.whiny_nils = true
+
+  # Show full error reports and disable caching
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Don't care if the mailer can't send
+  config.action_mailer.raise_delivery_errors = false
+
+  # Print deprecation notices to the Rails logger
+  config.active_support.deprecation = :log
+
+  # Only use best-standards-support built into browsers
+  config.action_dispatch.best_standards_support = :builtin
+
+  # Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
+  # config.force_ssl = true
+
+  # Do not compress assets
+  config.assets.compress = false
+
+  # Expands the lines which load the assets
+  config.assets.debug = false
+
+  #config.serve_static_assets = false #c07090: setting this back to false b/c static resources weren't being generated
+
+  config.to_prepare do
+    # Set class instance variable values again, which are dropped in development mode.
+    # See Q&A on this at: http://railsforum.com/viewtopic.php?pid=106274#p106274
+    Reference::DataTypes.reload if ActiveRecord::Base.connection.table_exists? 'reference_data_lists'
+  end
+
+end

data/config/environments/production.rb

@@ -0,0 +1,64 @@
+Mockingjay::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # Code is not reloaded between requests
+  config.cache_classes = true
+
+  # Full error reports are disabled and caching is turned on
+  config.consider_all_requests_local       = false
+  config.action_controller.perform_caching = true
+
+  # Disable Rails's static asset server (Apache or nginx will already do this)
+  config.serve_static_assets = false
+
+  # Compress JavaScripts and CSS
+  config.assets.compress = true
+
+  # Don't fallback to assets pipeline if a precompiled asset is missed
+  config.assets.compile = false
+
+  # Generate digests for assets URLs
+  config.assets.digest = true
+
+  # Defaults to nil and saved in location specified by config.assets.prefix
+  # config.assets.manifest = YOUR_PATH
+
+  # Specifies the header that your server uses for sending files
+  # config.action_dispatch.x_sendfile_header = "X-Sendfile" # for apache
+  # config.action_dispatch.x_sendfile_header = 'X-Accel-Redirect' # for nginx
+
+  # Force all access to the app over SSL, use Strict-Transport-Security, and use secure cookies.
+  config.force_ssl = true
+
+  # See everything in the log (default is :info)
+  # config.log_level = :debug
+
+  # Prepend all log lines with the following tags
+  # config.log_tags = [ :subdomain, :uuid ]
+
+  # Use a different logger for distributed setups
+  # config.logger = ActiveSupport::TaggedLogging.new(SyslogLogger.new)
+
+  # Use a different cache store in production
+  # config.cache_store = :mem_cache_store
+
+  # Enable serving of images, stylesheets, and JavaScripts from an asset server
+  # config.action_controller.asset_host = "http://assets.example.com"
+
+  # Precompile additional assets (application.js, application.css, and all non-JS/CSS are already added)
+  # config.assets.precompile += %w( search.js )
+
+  # Disable delivery errors, bad email addresses will be ignored
+  # config.action_mailer.raise_delivery_errors = false
+
+  # Enable threaded mode
+  # config.threadsafe!
+
+  # Enable locale fallbacks for I18n (makes lookups for any locale fall back to
+  # the I18n.default_locale when a translation can not be found)
+  config.i18n.fallbacks = true
+
+  # Send deprecation notices to registered listeners
+  config.active_support.deprecation = :notify
+
+end

data/config/environments/test.rb

@@ -0,0 +1,35 @@
+Mockingjay::Application.configure do
+  # Settings specified here will take precedence over those in config/application.rb
+
+  # The test environment is used exclusively to run your application's
+  # test suite. You never need to work with it otherwise. Remember that
+  # your test database is "scratch space" for the test suite and is wiped
+  # and recreated between test runs. Don't rely on the data there!
+  config.cache_classes = true
+
+  # Configure static asset server for tests with Cache-Control for performance
+  config.serve_static_assets = true
+  config.static_cache_control = "public, max-age=3600"
+
+  # Log error messages when you accidentally call methods on nil
+  config.whiny_nils = true
+
+  # Show full error reports and disable caching
+  config.consider_all_requests_local       = true
+  config.action_controller.perform_caching = false
+
+  # Raise exceptions instead of rendering exception templates
+  config.action_dispatch.show_exceptions = false
+
+  # Disable request forgery protection in test environment
+  config.action_controller.allow_forgery_protection    = false
+
+  # Tell Action Mailer not to deliver emails to the real world.
+  # The :test delivery method accumulates sent emails in the
+  # ActionMailer::Base.deliveries array.
+  config.action_mailer.delivery_method = :test
+
+
+  # Print deprecation notices to the stderr
+  config.active_support.deprecation = :stderr
+end

data/config/initializers/backtrace_silencers.rb

@@ -0,0 +1,7 @@
+# Be sure to restart your server when you modify this file.
+
+# You can add backtrace silencers for libraries that you're using but don't wish to see in your backtraces.
+# Rails.backtrace_cleaner.add_silencer { |line| line =~ /my_noisy_library/ }
+
+# You can also remove all the silencers if you're trying to debug a problem that might stem from framework code.
+# Rails.backtrace_cleaner.remove_silencers!

data/config/initializers/extensions/active_record.rb

@@ -0,0 +1,13 @@
+# We open up this class so that all of our models have convenient logging 
+# methods available at both the instance and class level.
+class ActiveRecord::Base
+
+  # Mixins: Logging
+  include ::Mixins::Logging
+  extend ::Mixins::Logging
+
+  # Mixins: Model Behaviors
+  include Mock::ResourceAncestorsConcern
+  include Mock::ImportConcern
+
+end