intermine 0.98.01

metadata

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+--- !ruby/object:Gem::Specification 
+name: intermine
+version: !ruby/object:Gem::Version 
+  hash: 405
+  prerelease: false
+  segments: 
+  - 0
+  - 98
+  - 1
+  version: 0.98.01
+platform: ruby
+authors: 
+- Alex Kalderimis
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2011-08-01 00:00:00 +01:00
+default_executable: 
+dependencies: 
+- !ruby/object:Gem::Dependency 
+  name: json
+  prerelease: false
+  requirement: &id001 !ruby/object:Gem::Requirement 
+    none: false
+    requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 3
+        segments: 
+        - 0
+        version: "0"
+  type: :runtime
+  version_requirements: *id001
+description: |
+  = Webservice Client Library for InterMine Data-Warehouses
+  
+  This library provides an interface to the InterMine webservices
+  API. It makes construction and execution of queries more 
+  straightforward, safe and convenient, and allows for results
+  to be used directly in Ruby code. As well as traditional row based
+  access, the library provides an object-orientated record result
+  format (similar to ActiveRecords), and allows for fast, memory 
+  efficient iteration of result sets.
+  
+  == Example
+  
+  Get all protein domains associated with a set of genes and print their names:
+  
+      require "intermine/service"
+  
+      Service.new("www.flymine.org/query").
+          new_query("Pathway")
+          select(:name).
+          where("genes.symbol" => ["zen", "hox", "h", "bib"]).
+          each_row { |row| puts row[:name]}
+  
+  == Who is this for?
+  
+  InterMine data warehouses are typically constructed to hold
+  Biological data, and as this library facilitates programmatic
+  access to these data, this install is primarily aimed at 
+  bioinformaticians. In particular, users of the following services
+  may find it especially useful:
+   * FlyMine (http://www.flymine.org/query)
+   * YeastMine (http://yeastmine.yeastgenome.org/yeastmine)
+   * RatMine (http://ratmine.mcw.edu/ratmine)
+   * modMine (http://intermine.modencode.org/release-23)
+   * metabolicMine (http://www.metabolicmine.org/beta)
+  
+  == How to use this library:
+  
+  We have tried to construct an interface to this library that
+  does not require you to learn an entirely new set of concepts. 
+  As such, as well as the underlying methods that are common
+  to all libraries, there is an additional set of aliases and sugar
+  methods that emulate the DSL style of SQL:
+  
+  === SQL style
+  
+    service = Service.new("www.flymine.org/query")
+    service.model.
+       table("Gene").
+       select("*", "pathways.*").
+       where(:symbol => "zen").
+       order_by(:symbol).
+       outerjoin(:pathways).
+       each_row do |r|
+         puts r
+       end
+  
+  === Common InterMine interface
+  
+    service = Service.new("www.flymine.org/query")
+    query = service.new_query("Gene")
+    query.add_views("*", "pathways.*")
+    query.add_constraint("symbol", "=", "zen")
+    query.add_sort_order(:symbol)
+    query.add_join(:pathways)
+    query.each_row do |r|
+      puts r
+    end
+  
+  For more details, see the accompanying documentation and the unit tests
+  for interface examples. Further documentation is available at www.intermine.org.
+  
+  == Support
+  
+  Support is available on our development mailing list: dev@intermine.org
+  
+  == License
+  
+  This code is Open Source under the LGPL. Source code for all InterMine code
+  can be checked out from svn://subversion.flymine.org/flymine
+
+email: 
+- dev@intermine.org
+executables: []
+
+extensions: []
+
+extra_rdoc_files: []
+
+files: 
+- lib/intermine/lists.rb
+- lib/intermine/model.rb
+- lib/intermine/query.rb
+- lib/intermine/results.rb
+- lib/intermine/service.rb
+- lib/intermine/version.rb
+- test/data/lists.json
+- test/data/model.json
+- test/data/resultobjs.json
+- test/data/resultrow.json
+- test/data/resultset.json
+- test/data/testmodel_model.xml
+- test/live_test.rb
+- test/test.rb
+- test/test_helper.rb
+- test/test_lists.rb
+- test/test_model.rb
+- test/test_query.rb
+- test/test_result_row.rb
+- test/test_results.rb
+- test/test_service.rb
+- test/test_sugar.rb
+- test/unit_tests.rb
+- MANIFEST
+- LICENCE
+- Rakefile
+- README.rdoc
+- Gemfile
+has_rdoc: true
+homepage: http://www.intermine.org
+licenses: 
+- LGPL
+post_install_message: 
+rdoc_options: 
+- --title
+- InterMine Webservice Client
+- --main
+- README
+- --line-numbers
+require_paths: 
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+  - - ">="
+    - !ruby/object:Gem::Version 
+      hash: 3
+      segments: 
+      - 0
+      version: "0"
+requirements: []
+
+rubyforge_project: intermine
+rubygems_version: 1.3.7
+signing_key: 
+specification_version: 3
+summary: Webservice Client Library for InterMine Data-Warehouses
+test_files: 
+- test/unit_tests.rb