inferno_core 0.6.9 → 0.6.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/inferno/apps/cli/evaluate/database.yml +15 -0
- data/lib/inferno/apps/cli/evaluate/docker-compose.evaluate.yml +16 -0
- data/lib/inferno/apps/cli/evaluate.rb +52 -4
- data/lib/inferno/apps/cli/main.rb +5 -1
- data/lib/inferno/apps/cli/requirements.rb +28 -0
- data/lib/inferno/apps/cli/requirements_exporter.rb +194 -0
- data/lib/inferno/apps/cli/suite.rb +21 -0
- data/lib/inferno/apps/cli/templates/lib/%library_name%/example_suite/patient_group.rb.tt +141 -0
- data/lib/inferno/apps/cli/templates/lib/%library_name%/example_suite.rb.tt +128 -0
- data/lib/inferno/apps/cli/templates/lib/%library_name%/metadata.rb.tt +65 -3
- data/lib/inferno/apps/cli/templates/lib/%library_name%/version.rb.tt +1 -0
- data/lib/inferno/apps/cli/templates/lib/%library_name%.rb.tt +1 -1
- data/lib/inferno/apps/web/serializers/input.rb +1 -0
- data/lib/inferno/apps/web/serializers/test.rb +1 -0
- data/lib/inferno/apps/web/serializers/test_group.rb +1 -0
- data/lib/inferno/apps/web/serializers/test_suite.rb +1 -0
- data/lib/inferno/config/boot/suites.rb +3 -0
- data/lib/inferno/dsl/fhir_evaluation/default.yml +68 -0
- data/lib/inferno/dsl/fhir_evaluation/evaluator.rb +3 -5
- data/lib/inferno/dsl/fhir_evaluation/rules/all_defined_extensions_have_examples.rb +2 -2
- data/lib/inferno/dsl/fhir_evaluation/rules/all_extensions_used.rb +2 -2
- data/lib/inferno/dsl/fhir_evaluation/rules/all_must_supports_present.rb +1 -1
- data/lib/inferno/dsl/fhir_evaluation/rules/all_profiles_have_examples.rb +1 -1
- data/lib/inferno/dsl/fhir_evaluation/rules/all_references_resolve.rb +2 -2
- data/lib/inferno/dsl/fhir_evaluation/rules/all_resources_reachable.rb +2 -2
- data/lib/inferno/dsl/fhir_evaluation/rules/all_search_parameters_have_examples.rb +22 -11
- data/lib/inferno/dsl/fhir_evaluation/rules/differential_content_has_examples.rb +2 -2
- data/lib/inferno/dsl/fhir_evaluation/rules/value_sets_demonstrate.rb +4 -4
- data/lib/inferno/dsl/fhir_resource_validation.rb +25 -3
- data/lib/inferno/dsl/fhirpath_evaluation.rb +25 -1
- data/lib/inferno/dsl/input_output_handling.rb +1 -0
- data/lib/inferno/dsl/runnable.rb +5 -0
- data/lib/inferno/dsl/short_id_manager.rb +55 -0
- data/lib/inferno/entities/input.rb +14 -5
- data/lib/inferno/entities/requirement.rb +15 -3
- data/lib/inferno/entities/test.rb +3 -1
- data/lib/inferno/entities/test_group.rb +3 -1
- data/lib/inferno/entities/test_suite.rb +2 -0
- data/lib/inferno/exceptions.rb +6 -0
- data/lib/inferno/public/237.bundle.js +1 -1
- data/lib/inferno/public/bundle.js +54 -54
- data/lib/inferno/public/bundle.js.LICENSE.txt +3 -36
- data/lib/inferno/repositories/requirements.rb +6 -2
- data/lib/inferno/version.rb +1 -1
- data/spec/shared/test_kit_examples.rb +32 -0
- metadata +24 -3
- data/lib/inferno/apps/cli/templates/lib/%library_name%/patient_group.rb.tt +0 -44
@@ -13,7 +13,9 @@ module Inferno
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:conformance,
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:actor,
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:sub_requirements,
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:conditionality
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:conditionality,
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:not_tested_reason,
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:not_tested_details
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].freeze
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include Inferno::Entities::Attributes
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@@ -35,9 +37,11 @@ module Inferno
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# @example
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# expand_requirement_ids('example-ig@1,3,5-7')
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# # => ['example-ig@1','example-ig@3','example-ig@5','example-ig@6','example-ig@7']
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# expand_requirement_ids('example-ig')
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# # => []
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# expand_requirement_ids('1,3,5-7', 'example-ig')
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# # => ['example-ig@1','example-ig@3','example-ig@5','example-ig@6','example-ig@7']
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def self.expand_requirement_ids(requirement_id_string, default_set = nil)
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def self.expand_requirement_ids(requirement_id_string, default_set = nil) # rubocop:disable Metrics/CyclomaticComplexity
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return [] if requirement_id_string.blank?
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current_set = default_set
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@@ -50,7 +54,11 @@ module Inferno
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requirement_ids =
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if requirement_string.include? '-'
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start_id, end_id = requirement_string.split('-')
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-
(
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if start_id.match?(/^\d+$/) && end_id.match?(/^\d+$/)
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(start_id..end_id).to_a
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else
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[]
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end
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else
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[requirement_string]
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end
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@@ -58,6 +66,10 @@ module Inferno
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requirement_ids.map { |id| "#{current_set}@#{id}" }
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end
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end
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def tested?
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not_tested_reason.blank?
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end
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end
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end
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end
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@@ -103,7 +103,9 @@ module Inferno
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Inferno::Repositories::Tests.new
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end
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-
def short_id
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def short_id(new_short_id = nil)
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return @short_id = new_short_id if new_short_id
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@short_id ||= begin
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prefix = parent.respond_to?(:short_id) ? "#{parent.short_id}." : ''
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suffix = parent ? (parent.tests.find_index(self) + 1).to_s.rjust(2, '0') : 'x'
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@@ -96,7 +96,9 @@ module Inferno
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end
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# @return [String] A short numeric id which is displayed in the UI
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def short_id
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def short_id(new_short_id = nil)
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return @short_id = new_short_id if new_short_id
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@short_id ||= begin
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prefix = parent.respond_to?(:short_id) ? "#{parent.short_id}." : ''
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suffix = parent ? (parent.groups.find_index(self) + 1).to_s : 'X'
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@@ -7,6 +7,7 @@ require_relative '../dsl/links'
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require_relative '../repositories/test_groups'
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require_relative '../repositories/test_suites'
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require_relative '../result_collection'
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require_relative '../dsl/short_id_manager'
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module Inferno
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module Entities
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@@ -18,6 +19,7 @@ module Inferno
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extend DSL::FHIRClient::ClassMethods
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extend DSL::HTTPClient::ClassMethods
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extend DSL::SuiteRequirements
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extend DSL::ShortIDManager
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include DSL::FHIRValidation
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include DSL::FHIRResourceValidation
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include DSL::FhirpathEvaluation
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data/lib/inferno/exceptions.rb
CHANGED
@@ -102,6 +102,12 @@ module Inferno
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end
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end
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class InvalidAttributeException < RuntimeError
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def initialize(attribute, klass, message)
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super("Invalid attribute '#{attribute}' for #{klass.name}: #{message}")
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end
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end
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class UnknownSessionDataType < RuntimeError
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def initialize(output)
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super("Unknown type '#{output[:type]}' for '#{output[:name]}'.")
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@@ -1 +1 @@
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1
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-
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