inferno_core 0.6.8 → 0.6.10

data/lib/inferno/public/bundle.js.LICENSE.txt

@@ -14,9 +14,9 @@
 
 /**
  * @license React
- * react-is.production.min.js
+ * react-is.production.js
  *
- * Copyright (c) Facebook, Inc. and its affiliates.
+ * Copyright (c) Meta Platforms, Inc. and affiliates.
  *
  * This source code is licensed under the MIT license found in the
  * LICENSE file in the root directory of this source tree.
@@ -53,46 +53,13 @@
  */
 
 /**
- * @mui/styled-engine v6.1.1
+ * @mui/styled-engine v6.4.8
  *
  * @license MIT
  * This source code is licensed under the MIT license found in the
  * LICENSE file in the root directory of this source tree.
  */
 
-/**
- * @remix-run/router v1.21.0
- *
- * Copyright (c) Remix Software Inc.
- *
- * This source code is licensed under the MIT license found in the
- * LICENSE.md file in the root directory of this source tree.
- *
- * @license MIT
- */
-
-/**
- * React Router DOM v6.28.1
- *
- * Copyright (c) Remix Software Inc.
- *
- * This source code is licensed under the MIT license found in the
- * LICENSE.md file in the root directory of this source tree.
- *
- * @license MIT
- */
-
-/**
- * React Router v6.28.1
- *
- * Copyright (c) Remix Software Inc.
- *
- * This source code is licensed under the MIT license found in the
- * LICENSE.md file in the root directory of this source tree.
- *
- * @license MIT
- */
-
 /** @license React v16.13.1
  * react-is.production.min.js
  *

data/lib/inferno/repositories/igs.rb

@@ -18,8 +18,7 @@ module Inferno
       def find_or_load(id_or_path)
         return find(id_or_path) if exists?(id_or_path)
 
-        ig_by_path = find_by_path(id_or_path)
-
+        ig_by_path = find_by_path(id_or_path) || find_by_path(find_local_file(id_or_path))
         return ig_by_path if ig_by_path
 
         load(id_or_path)

data/lib/inferno/repositories/requirements.rb

@@ -0,0 +1,120 @@
+require 'csv'
+require_relative 'in_memory_repository'
+require_relative '../entities/requirement'
+
+module Inferno
+  module Repositories
+    # Repository that deals with persistence for the `Requirement` entity.
+    class Requirements < InMemoryRepository
+      def insert_from_file(path)
+        result = []
+
+        CSV.foreach(path, headers: true, header_converters: :symbol) do |row|
+          req_set = row[:req_set]
+          id = row[:id]
+          sub_requirements_field = row[:subrequirements]
+
+          combined_id = "#{req_set}@#{id}"
+
+          # Processing sub requirements: e.g. "170.315(g)(31)_hti-2-proposal@5,17,23,26,27,32,35,38-41"
+          sub_requirements = Inferno::Entities::Requirement.expand_requirement_ids(sub_requirements_field)
+
+          result << {
+            requirement_set: req_set,
+            id: combined_id,
+            url: row[:url],
+            requirement: row[:requirement],
+            conformance: row[:conformance],
+            actor: row[:actor],
+            sub_requirements: sub_requirements,
+            conditionality: row[:conditionality]&.downcase,
+            not_tested_reason: row[:not_tested_reason],
+            not_tested_details: row[:not_tested_details]
+          }
+        end
+
+        result.each do |raw_req|
+          requirement = Entities::Requirement.new(raw_req)
+
+          insert(requirement)
+        end
+      end
+
+      def filter_requirements_by_ids(ids)
+        all.select { |requirement| ids.include?(requirement.id) }
+      end
+
+      def requirements_for_suite(test_suite_id, test_session_id = nil)
+        test_suite = Inferno::Repositories::TestSuites.new.find(test_suite_id)
+        selected_suite_options =
+          if test_session_id.present?
+            Inferno::Repositories::TestSessions.new.find(test_session_id).suite_options
+          else
+            []
+          end
+
+        requirement_sets =
+          test_suite
+            .requirement_sets
+            .select do |set|
+              set.suite_options.all? { |set_option| selected_suite_options.include? set_option }
+            end
+
+        requirements =
+          complete_requirement_set_requirements(requirement_sets) +
+          filtered_requirement_set_requirements(requirement_sets)
+
+        add_referenced_requirement_set_requirements(requirements, requirement_sets).uniq
+      end
+
+      def complete_requirement_set_requirements(requirement_sets)
+        requirement_sets.select(&:complete?)
+          .flat_map do |requirement_set|
+            all.select do |requirement|
+              requirement.requirement_set == requirement_set.identifier &&
+                requirement.actor == requirement_set.actor &&
+                requirement.tested?
+            end
+          end
+      end
+
+      def filtered_requirement_set_requirements(requirement_sets)
+        requirement_sets.select(&:filtered?)
+          .flat_map do |requirement_set|
+            requirement_set
+              .expand_requirement_ids
+              .map { |requirement_id| find(requirement_id) }
+              .select { |requirement| requirement.actor == requirement_set.actor }
+          end
+      end
+
+      def add_referenced_requirement_set_requirements( # rubocop:disable Metrics/CyclomaticComplexity
+        requirements_to_process,
+        requirement_sets,
+        processed_requirements = []
+      )
+        return processed_requirements if requirements_to_process.blank?
+
+        referenced_requirement_sets = requirement_sets.select(&:referenced?)
+
+        referenced_requirement_ids =
+          requirements_to_process
+            .flat_map(&:sub_requirements)
+            .select do |requirement_id|
+              referenced_requirement_sets.any? do |set|
+                requirement_id.start_with?("#{set.identifier}@") && (find(requirement_id).actor == set.actor)
+              end
+            end
+
+        new_requirements =
+          referenced_requirement_ids.map { |id| find(id) } - requirements_to_process - processed_requirements
+
+        add_referenced_requirement_set_requirements(
+          new_requirements,
+          referenced_requirement_sets,
+          (processed_requirements + requirements_to_process).uniq
+        )
+      end
+    end
+  end
+end

data/lib/inferno/version.rb

@@ -1,4 +1,4 @@
 module Inferno
   # Standard patterns for gem versions: https://guides.rubygems.org/patterns/
-  VERSION = '0.6.8'.freeze
+  VERSION = '0.6.10'.freeze
 end

data/spec/shared/test_kit_examples.rb

@@ -168,6 +168,38 @@ RSpec.shared_examples 'platform_deployable_test_kit' do
         end
       end
     end
+
+    context 'when short_id map file present' do
+      it 'contains a short_id for every suite test and group' do
+        suites.each do |suite|
+          short_id_map = suite.short_id_map.dup
+          next unless short_id_map
+
+          runnable_ids = suite.all_descendants.map(&:id)
+          missing_ids = runnable_ids.reject { |id| short_id_map.delete(id).present? }
+
+          expect(missing_ids).to be_empty, <<~MSG
+            The following runnables in #{suite.short_id_file_path} are missing short_ids:
+            #{missing_ids.join(', ')}
+          MSG
+        end
+      end
+
+      it 'does not contain any extra short ids' do
+        suites.each do |suite|
+          short_id_map = suite.short_id_map.dup
+          next unless short_id_map
+
+          runnable_ids = suite.all_descendants.map(&:id)
+          extra_ids = short_id_map.keys - runnable_ids
+
+          expect(extra_ids).to be_empty, <<~MSG
+            #{suite.short_id_file_path} contains the following ids which do not belong
+            to any runnable: #{extra_ids.join(', ')}
+          MSG
+        end
+      end
+    end
   end
 
   describe 'presets' do

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: inferno_core
 version: !ruby/object:Gem::Version
-  version: 0.6.8
+  version: 0.6.10
 platform: ruby
 authors:
 - Stephen MacVicar
@@ -10,7 +10,7 @@ authors:
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2025-03-28 00:00:00.000000000 Z
+date: 2025-05-27 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -320,6 +320,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '13.0'
+- !ruby/object:Gem::Dependency
+  name: roo
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.10.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 2.10.1
 - !ruby/object:Gem::Dependency
   name: sequel
   requirement: !ruby/object:Gem::Requirement
@@ -405,6 +419,8 @@ files:
 - lib/inferno/apps/cli.rb
 - lib/inferno/apps/cli/console.rb
 - lib/inferno/apps/cli/evaluate.rb
+- lib/inferno/apps/cli/evaluate/database.yml
+- lib/inferno/apps/cli/evaluate/docker-compose.evaluate.yml
 - lib/inferno/apps/cli/execute.rb
 - lib/inferno/apps/cli/execute/console_outputter.rb
 - lib/inferno/apps/cli/execute/json_outputter.rb
@@ -414,6 +430,8 @@ files:
 - lib/inferno/apps/cli/main.rb
 - lib/inferno/apps/cli/migration.rb
 - lib/inferno/apps/cli/new.rb
+- lib/inferno/apps/cli/requirements.rb
+- lib/inferno/apps/cli/requirements_exporter.rb
 - lib/inferno/apps/cli/services.rb
 - lib/inferno/apps/cli/suite.rb
 - lib/inferno/apps/cli/suite_input_template.rb
@@ -450,11 +468,12 @@ files:
 - lib/inferno/apps/cli/templates/docs/_Footer.md
 - lib/inferno/apps/cli/templates/docs/_Sidebar.md
 - lib/inferno/apps/cli/templates/lib/%library_name%.rb.tt
+- lib/inferno/apps/cli/templates/lib/%library_name%/example_suite.rb.tt
+- lib/inferno/apps/cli/templates/lib/%library_name%/example_suite/patient_group.rb.tt
 - lib/inferno/apps/cli/templates/lib/%library_name%/igs/.keep
 - lib/inferno/apps/cli/templates/lib/%library_name%/igs/README.md
 - lib/inferno/apps/cli/templates/lib/%library_name%/igs/put_ig_package_dot_tgz_here
 - lib/inferno/apps/cli/templates/lib/%library_name%/metadata.rb.tt
-- lib/inferno/apps/cli/templates/lib/%library_name%/patient_group.rb.tt
 - lib/inferno/apps/cli/templates/lib/%library_name%/suite.rb.tt
 - lib/inferno/apps/cli/templates/lib/%library_name%/version.rb.tt
 - lib/inferno/apps/cli/templates/run.sh
@@ -465,6 +484,7 @@ files:
 - lib/inferno/apps/web/application.rb
 - lib/inferno/apps/web/controllers/controller.rb
 - lib/inferno/apps/web/controllers/requests/show.rb
+- lib/inferno/apps/web/controllers/requirements/show.rb
 - lib/inferno/apps/web/controllers/test_runs/create.rb
 - lib/inferno/apps/web/controllers/test_runs/destroy.rb
 - lib/inferno/apps/web/controllers/test_runs/results/index.rb
@@ -479,6 +499,7 @@ files:
 - lib/inferno/apps/web/controllers/test_sessions/show.rb
 - lib/inferno/apps/web/controllers/test_suites/check_configuration.rb
 - lib/inferno/apps/web/controllers/test_suites/index.rb
+- lib/inferno/apps/web/controllers/test_suites/requirements/index.rb
 - lib/inferno/apps/web/controllers/test_suites/show.rb
 - lib/inferno/apps/web/index.html.erb
 - lib/inferno/apps/web/router.rb
@@ -489,6 +510,8 @@ files:
 - lib/inferno/apps/web/serializers/message.rb
 - lib/inferno/apps/web/serializers/preset.rb
 - lib/inferno/apps/web/serializers/request.rb
+- lib/inferno/apps/web/serializers/requirement.rb
+- lib/inferno/apps/web/serializers/requirement_set.rb
 - lib/inferno/apps/web/serializers/result.rb
 - lib/inferno/apps/web/serializers/serializer.rb
 - lib/inferno/apps/web/serializers/session_data.rb
@@ -505,6 +528,7 @@ files:
 - lib/inferno/config/boot/ig_files.rb
 - lib/inferno/config/boot/logging.rb
 - lib/inferno/config/boot/presets.rb
+- lib/inferno/config/boot/requirements.rb
 - lib/inferno/config/boot/sidekiq.rb
 - lib/inferno/config/boot/suites.rb
 - lib/inferno/config/boot/validator.rb
@@ -528,6 +552,7 @@ files:
 - lib/inferno/dsl/fhir_client_builder.rb
 - lib/inferno/dsl/fhir_evaluation/config.rb
 - lib/inferno/dsl/fhir_evaluation/dataset_loader.rb
+- lib/inferno/dsl/fhir_evaluation/default.yml
 - lib/inferno/dsl/fhir_evaluation/evaluation_context.rb
 - lib/inferno/dsl/fhir_evaluation/evaluation_result.rb
 - lib/inferno/dsl/fhir_evaluation/evaluator.rb
@@ -535,11 +560,14 @@ files:
 - lib/inferno/dsl/fhir_evaluation/reference_extractor.rb
 - lib/inferno/dsl/fhir_evaluation/rule.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_defined_extensions_have_examples.rb
+- lib/inferno/dsl/fhir_evaluation/rules/all_extensions_used.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_must_supports_present.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_profiles_have_examples.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_references_resolve.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_resources_reachable.rb
 - lib/inferno/dsl/fhir_evaluation/rules/all_search_parameters_have_examples.rb
+- lib/inferno/dsl/fhir_evaluation/rules/differential_content_has_examples.rb
+- lib/inferno/dsl/fhir_evaluation/rules/value_sets_demonstrate.rb
 - lib/inferno/dsl/fhir_resource_navigation.rb
 - lib/inferno/dsl/fhir_resource_validation.rb
 - lib/inferno/dsl/fhir_validation.rb
@@ -556,11 +584,14 @@ files:
 - lib/inferno/dsl/oauth_credentials.rb
 - lib/inferno/dsl/primitive_type.rb
 - lib/inferno/dsl/request_storage.rb
+- lib/inferno/dsl/requirement_set.rb
 - lib/inferno/dsl/results.rb
 - lib/inferno/dsl/resume_test_route.rb
 - lib/inferno/dsl/runnable.rb
+- lib/inferno/dsl/short_id_manager.rb
 - lib/inferno/dsl/suite_endpoint.rb
 - lib/inferno/dsl/suite_option.rb
+- lib/inferno/dsl/suite_requirements.rb
 - lib/inferno/dsl/tcp_exception_handler.rb
 - lib/inferno/dsl/value_extractor.rb
 - lib/inferno/entities.rb
@@ -573,6 +604,7 @@ files:
 - lib/inferno/entities/message.rb
 - lib/inferno/entities/preset.rb
 - lib/inferno/entities/request.rb
+- lib/inferno/entities/requirement.rb
 - lib/inferno/entities/result.rb
 - lib/inferno/entities/session_data.rb
 - lib/inferno/entities/test.rb
@@ -607,6 +639,7 @@ files:
 - lib/inferno/repositories/presets.rb
 - lib/inferno/repositories/repository.rb
 - lib/inferno/repositories/requests.rb
+- lib/inferno/repositories/requirements.rb
 - lib/inferno/repositories/results.rb
 - lib/inferno/repositories/session_data.rb
 - lib/inferno/repositories/tags.rb

data/lib/inferno/apps/cli/templates/lib/%library_name%/patient_group.rb.tt

@@ -1,44 +0,0 @@
-module <%= module_name %>
-  class PatientGroup < Inferno::TestGroup
-    title 'Patient Tests'
-    description 'Verify that the server makes Patient resources available'
-    id :patient_group
-
-    test do
-      title 'Server returns requested Patient resource from the Patient read interaction'
-      description %(
-        Verify that Patient resources can be read from the server.
-      )
-
-      input :patient_id,
-            title: 'Patient ID'
-
-      # Named requests can be used by other tests
-      makes_request :patient
-
-      run do
-        fhir_read(:patient, patient_id, name: :patient)
-
-        assert_response_status(200)
-        assert_resource_type(:patient)
-        assert resource.id == patient_id,
-               "Requested resource with id #{patient_id}, received resource with id #{resource.id}"
-      end
-    end
-
-    test do
-      title 'Patient resource is valid'
-      description %(
-        Verify that the Patient resource returned from the server is a valid FHIR resource.
-      )
-      # This test will use the response from the :patient request in the
-      # previous test
-      uses_request :patient
-
-      run do
-        assert_resource_type(:patient)
-        assert_valid_resource
-      end
-    end
-  end
-end