inferno_core 0.6.15 → 0.6.17
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/inferno/apps/cli/evaluate.rb +1 -1
- data/lib/inferno/apps/cli/requirements.rb +0 -2
- data/lib/inferno/apps/cli/requirements_exporter.rb +19 -17
- data/lib/inferno/apps/web/router.rb +5 -9
- data/lib/inferno/apps/web/serializers/requirement.rb +1 -1
- data/lib/inferno/apps/web/serializers/serializer.rb +0 -6
- data/lib/inferno/apps/web/serializers/test.rb +1 -1
- data/lib/inferno/apps/web/serializers/test_group.rb +1 -1
- data/lib/inferno/apps/web/serializers/test_suite.rb +2 -2
- data/lib/inferno/dsl/fhir_resource_navigation.rb +1 -1
- data/lib/inferno/dsl/fhir_resource_validation.rb +25 -18
- data/lib/inferno/dsl/short_id_manager.rb +12 -3
- data/lib/inferno/entities/requirement.rb +7 -2
- data/lib/inferno/feature.rb +2 -2
- data/lib/inferno/public/237.bundle.js +1 -1
- data/lib/inferno/public/bundle.js +34 -34
- data/lib/inferno/public/bundle.js.LICENSE.txt +2 -2
- data/lib/inferno/repositories/requirements.rb +2 -6
- data/lib/inferno/version.rb +1 -1
- metadata +30 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 4f5e1cae1c23852f0f5cab017eb7b1fc361fce08f53c7ad1cc47859a0a3546ab
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data.tar.gz: 34be067581780bca55ae925bfaae31bd56a6f6ed864774b915f0ac9147d426e1
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 8e082414599d3d7c9d84129cfa78a4cafb3fcf3a3df1f4aec586119cfc67c234d183374256545217a827c916ca16bcdbe2bd3955dc1149383871e31247260aed
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data.tar.gz: 5ca8d4645f9667cba2e2ef92c9690a947d2e70027537f57bbedb4bb239742c01c95d6c3e853367b4840d58cdb728f3c89aa671e5bfaff75a3e85be284b3fde15
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@@ -112,7 +112,7 @@ module Inferno
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Inferno::DSL::FHIRResourceValidation::Validator.new(:default, 'evaluator_cli') do
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igs(ig_path)
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-
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validation_context do
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# For our purposes, code display mismatches should be warnings and not affect profile conformance
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displayWarnings(true)
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end
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@@ -128,36 +128,36 @@ module Inferno
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@old_requirements_csv ||= File.read(requirements_output_file_path)
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end
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def
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@
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def missing_subrequirements
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@missing_subrequirements =
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{}.tap do |missing_requirements|
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repo = Inferno::Repositories::Requirements.new
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input_requirement_sets
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.each do |requirement_set, requirements|
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requirements.each do |requirement_hash|
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-
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missing_subrequirements =
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Inferno::Entities::Requirement.expand_requirement_ids(requirement_hash['Sub-Requirement(s)'])
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.reject { |requirement_id| repo.exists? requirement_id }
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missing_subrequirements += missing_actor_subrequirements(requirement_hash['Sub-Requirement(s)'])
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next if
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next if missing_subrequirements.blank?
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id = "#{requirement_set}@#{requirement_hash['ID*']}"
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missing_requirements[id] =
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missing_requirements[id] = missing_subrequirements
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end
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end
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end
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end
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def
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return [] if
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def missing_actor_subrequirements(subrequirement_string)
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return [] if subrequirement_string.blank?
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return [] unless
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return [] unless subrequirement_string.include? '#'
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subrequirement_string
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.split(',')
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.map(&:strip)
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.select { |requirement_string| requirement_string.include? '#' }
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@@ -166,11 +166,11 @@ module Inferno
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end
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end
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def
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return if
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def check_subrequirements
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return if missing_subrequirements.blank?
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puts "#{id} is missing the following sub-requirements:\n #{
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missing_subrequirements.each do |id, subrequirement_ids|
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puts "#{id} is missing the following sub-requirements:\n #{subrequirement_ids.join(', ')}"
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end
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end
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@@ -196,7 +196,9 @@ module Inferno
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File.write(requirements_output_file_path, new_requirements_csv, encoding: Encoding::UTF_8)
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end
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-
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Inferno::Application.start(:requirements)
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check_subrequirements
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puts 'Done.'
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end
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exit(1)
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end
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-
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check_subrequirements
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return if
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return if missing_subrequirements.blank?
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exit(1)
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end
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put '/:id/check_configuration',
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to: Inferno::Web::Controllers::TestSuites::CheckConfiguration,
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as: :check_configuration
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as: :requirements
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end
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get ':id/requirements',
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to: Inferno::Web::Controllers::TestSuites::Requirements::Index,
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as: :requirements
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end
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get '/:id', to: Inferno::Web::Controllers::Requirements::Show, as: :show
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end
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scope 'requirements' do
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get '/:id', to: Inferno::Web::Controllers::Requirements::Show, as: :show
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end
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get '/requests/:id', to: Inferno::Web::Controllers::Requests::Show, as: :requests_show
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@@ -14,12 +14,6 @@ module Inferno
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result.send(name).present?
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end
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end
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# When removing the feature flag, replace all instances of this method
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# with `.field_present?`
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def self.field_present_and_requirements_enabled?(field_name, result, options)
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field_present?(field_name, result, options) && Feature.requirements_enabled?
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end
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end
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end
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end
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field :input_instructions
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field :user_runnable?, name: :user_runnable
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field :optional?, name: :optional
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field :verifies_requirements, if: :
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field :verifies_requirements, if: :field_present?
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end
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end
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end
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Input.render_as_hash(group.available_inputs(suite_options).values)
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end
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field :output_definitions, name: :outputs, extractor: HashValueExtractor
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field :verifies_requirements, if: :
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field :verifies_requirements, if: :field_present?
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end
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end
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end
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suite_options = options[:suite_options]
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Input.render_as_hash(suite.available_inputs(suite_options).values)
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end
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field :requirement_sets, if: :
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field :requirement_sets, if: :field_present? do |suite, options|
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selected_options = options[:suite_options] || []
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requirement_sets = suite.requirement_sets.select do |requirement_set|
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requirement_set.suite_options.all? { |suite_option| selected_options.include? suite_option }
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RequirementSet.render_as_hash(requirement_sets)
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end
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field :verifies_requirements, if: :
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field :verifies_requirements, if: :field_present?
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end
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end
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end
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end
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def matching_pattern_identifier_slice?(slice, discriminator)
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slice.
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slice.system == discriminator[:system]
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end
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def matching_value_slice?(slice, discriminator)
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require_relative '../ext/fhir_models'
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require_relative '../feature'
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module Inferno
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module DSL
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# This module contains the methods needed to configure a validator to
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# { type: 'info', message: 'everything is ok' }
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# end
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# end
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#
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# validation_context do
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# noExtensibleBindingMessages true
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# allowExampleUrls true
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# txServer nil
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# igs("hl7.fhir.us.core#3.1.1", "hl7.fhir.us.core#6.0.0")
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# @param validator_igs [Array<String>]
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def igs(*validator_igs)
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validation_context(igs: validator_igs) if validator_igs.any?
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-
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validation_context.igs
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end
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# Set the
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# Set the validationContext used as part of each validation request.
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# Fields may be passed as either a Hash or block.
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# Note that all fields included here will be sent directly in requests,
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# there is no check that the fields are correct.
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# # Passing fields in a block
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# fhir_resource_validator do
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# url 'http://example.com/validator'
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#
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# validation_context do
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# noExtensibleBindingMessages true
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# allowExampleUrls true
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# txServer nil
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# # Passing fields in a Hash
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# fhir_resource_validator do
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# url 'http://example.org/validator'
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#
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# validation_context({
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# noExtensibleBindingMessages: true,
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# allowExampleUrls: true,
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# txServer: nil
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# end
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#
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# @param definition [Hash] raw fields to set, optional
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def
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if @
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def validation_context(definition = nil, &)
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if @validation_context
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if definition
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@
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@validation_context.definition.merge!(definition.deep_symbolize_keys)
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elsif block_given?
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@
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@validation_context.instance_eval(&)
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end
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else
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@
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@validation_context = ValidationContext.new(definition || {}, &)
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end
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@validation_context
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end
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alias cli_context validation_context
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# @private
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def additional_validations
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@additional_validations ||= []
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@session_id = validator_session_id if validator_session_id
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# HL7 Validator Core 6.5.19+ renamed `cliContext` to `validationContext`.
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# This allows backward compatibility until the validator-wrapper is updated.
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context_key = Feature.use_validation_context_key? ? :validationContext : :cliContext
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wrapped_resource = {
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**
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context_key => {
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**validation_context.definition,
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profiles: [profile_url]
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},
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filesToValidate: [
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end
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# @private
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class
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class ValidationContext
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attr_reader :definition
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VALIDATIONCONTEXT_DEFAULTS = {
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sv: '4.0.1',
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doNative: false,
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extensions: ['any'],
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# @private
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def initialize(definition, &)
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@definition =
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@definition = VALIDATIONCONTEXT_DEFAULTS.merge(definition.deep_symbolize_keys)
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instance_eval(&) if block_given?
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end
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# @private
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def method_missing(method_name, *args)
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# Interpret any other method as setting a field on
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# Interpret any other method as setting a field on validationContext.
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# Follow the same format as `Validator.url` here:
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# only set the value if one is provided.
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# args will be an empty array if no value is provided.
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# This module manages and locks short IDs, ensuring that short IDs
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# remain stable and do not change unexpectedly.
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module ShortIDManager
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def base_short_id_file_folder
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File.
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def base_short_id_file_folder(folder = nil)
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folder ||= File.dirname(Object.const_source_location(name).first)
|
|
8
|
+
|
|
9
|
+
return folder if File.exist?(File.join(folder, short_id_file_name))
|
|
10
|
+
|
|
11
|
+
return folder if File.basename(File.dirname(folder)) == 'lib'
|
|
12
|
+
|
|
13
|
+
return folder if File.dirname(folder) == folder
|
|
14
|
+
|
|
15
|
+
base_short_id_file_folder(File.dirname(folder))
|
|
8
16
|
end
|
|
9
17
|
|
|
10
18
|
def short_id_file_name
|
|
@@ -12,7 +20,8 @@ module Inferno
|
|
|
12
20
|
end
|
|
13
21
|
|
|
14
22
|
def short_id_file_path
|
|
15
|
-
|
|
23
|
+
@short_id_file_path =
|
|
24
|
+
File.join(base_short_id_file_folder, short_id_file_name).freeze
|
|
16
25
|
end
|
|
17
26
|
|
|
18
27
|
# Loads and memoizes the short ID map from the YAML file.
|
|
@@ -12,7 +12,8 @@ module Inferno
|
|
|
12
12
|
:requirement,
|
|
13
13
|
:conformance,
|
|
14
14
|
:actors,
|
|
15
|
-
:
|
|
15
|
+
:subrequirements,
|
|
16
|
+
:subrequirements_string,
|
|
16
17
|
:conditionality,
|
|
17
18
|
:not_tested_reason,
|
|
18
19
|
:not_tested_details
|
|
@@ -28,6 +29,10 @@ module Inferno
|
|
|
28
29
|
self.requirement_set = id.split(/[@#]/).first
|
|
29
30
|
end
|
|
30
31
|
|
|
32
|
+
def subrequirements
|
|
33
|
+
@subrequirements ||= self.class.expand_requirement_ids(subrequirements_string, requirement_set)
|
|
34
|
+
end
|
|
35
|
+
|
|
31
36
|
# Expand a comma-delimited list of requirement id references into an Array
|
|
32
37
|
# of full requirement ids
|
|
33
38
|
#
|
|
@@ -62,7 +67,7 @@ module Inferno
|
|
|
62
67
|
requirement_ids =
|
|
63
68
|
if actor.present?
|
|
64
69
|
return Repositories::Requirements.new.requirements_for_actor(current_set, actor).map(&:id)
|
|
65
|
-
elsif requirement_string.include?
|
|
70
|
+
elsif requirement_string.include?('-') && !requirement_string.match?(/[^\d\-]/)
|
|
66
71
|
start_id, end_id = requirement_string.split('-')
|
|
67
72
|
if start_id.match?(/^\d+$/) && end_id.match?(/^\d+$/)
|
|
68
73
|
(start_id..end_id).to_a
|
data/lib/inferno/feature.rb
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
"use strict";(self.webpackChunkinferno_web_app=self.webpackChunkinferno_web_app||[]).push([[237],{237:(e,n,t)=>{t.r(n),t.d(n,{CLSThresholds:()=>P,FCPThresholds:()=>w,FIDThresholds:()=>ne,INPThresholds:()=>j,LCPThresholds:()=>G,TTFBThresholds:()=>Q,onCLS:()=>A,onFCP:()=>I,onFID:()=>te,onINP:()=>z,onLCP:()=>K,onTTFB:()=>V});var r,i,o,a,c,u=-1,s=function(e){addEventListener("pageshow",
|
|
1
|
+
"use strict";(self.webpackChunkinferno_web_app=self.webpackChunkinferno_web_app||[]).push([[237],{237:(e,n,t)=>{t.r(n),t.d(n,{CLSThresholds:()=>P,FCPThresholds:()=>w,FIDThresholds:()=>ne,INPThresholds:()=>j,LCPThresholds:()=>G,TTFBThresholds:()=>Q,onCLS:()=>A,onFCP:()=>I,onFID:()=>te,onINP:()=>z,onLCP:()=>K,onTTFB:()=>V});var r,i,o,a,c,u=-1,s=function(e){addEventListener("pageshow",function(n){n.persisted&&(u=n.timeStamp,e(n))},!0)},f=function(){var e=self.performance&&performance.getEntriesByType&&performance.getEntriesByType("navigation")[0];if(e&&e.responseStart>0&&e.responseStart<performance.now())return e},d=function(){var e=f();return e&&e.activationStart||0},l=function(e,n){var t=f(),r="navigate";return u>=0?r="back-forward-cache":t&&(document.prerendering||d()>0?r="prerender":document.wasDiscarded?r="restore":t.type&&(r=t.type.replace(/_/g,"-"))),{name:e,value:void 0===n?-1:n,rating:"good",delta:0,entries:[],id:"v4-".concat(Date.now(),"-").concat(Math.floor(8999999999999*Math.random())+1e12),navigationType:r}},p=function(e,n,t){try{if(PerformanceObserver.supportedEntryTypes.includes(e)){var r=new PerformanceObserver(function(e){Promise.resolve().then(function(){n(e.getEntries())})});return r.observe(Object.assign({type:e,buffered:!0},t||{})),r}}catch(e){}},v=function(e,n,t,r){var i,o;return function(a){n.value>=0&&(a||r)&&((o=n.value-(i||0))||void 0===i)&&(i=n.value,n.delta=o,n.rating=function(e,n){return e>n[1]?"poor":e>n[0]?"needs-improvement":"good"}(n.value,t),e(n))}},m=function(e){requestAnimationFrame(function(){return requestAnimationFrame(function(){return e()})})},h=function(e){document.addEventListener("visibilitychange",function(){"hidden"===document.visibilityState&&e()})},g=function(e){var n=!1;return function(){n||(e(),n=!0)}},T=-1,y=function(){return"hidden"!==document.visibilityState||document.prerendering?1/0:0},E=function(e){"hidden"===document.visibilityState&&T>-1&&(T="visibilitychange"===e.type?e.timeStamp:0,b())},C=function(){addEventListener("visibilitychange",E,!0),addEventListener("prerenderingchange",E,!0)},b=function(){removeEventListener("visibilitychange",E,!0),removeEventListener("prerenderingchange",E,!0)},L=function(){return T<0&&(T=y(),C(),s(function(){setTimeout(function(){T=y(),C()},0)})),{get firstHiddenTime(){return T}}},S=function(e){document.prerendering?addEventListener("prerenderingchange",function(){return e()},!0):e()},w=[1800,3e3],I=function(e,n){n=n||{},S(function(){var t,r=L(),i=l("FCP"),o=p("paint",function(e){e.forEach(function(e){"first-contentful-paint"===e.name&&(o.disconnect(),e.startTime<r.firstHiddenTime&&(i.value=Math.max(e.startTime-d(),0),i.entries.push(e),t(!0)))})});o&&(t=v(e,i,w,n.reportAllChanges),s(function(r){i=l("FCP"),t=v(e,i,w,n.reportAllChanges),m(function(){i.value=performance.now()-r.timeStamp,t(!0)})}))})},P=[.1,.25],A=function(e,n){n=n||{},I(g(function(){var t,r=l("CLS",0),i=0,o=[],a=function(e){e.forEach(function(e){if(!e.hadRecentInput){var n=o[0],t=o[o.length-1];i&&e.startTime-t.startTime<1e3&&e.startTime-n.startTime<5e3?(i+=e.value,o.push(e)):(i=e.value,o=[e])}}),i>r.value&&(r.value=i,r.entries=o,t())},c=p("layout-shift",a);c&&(t=v(e,r,P,n.reportAllChanges),h(function(){a(c.takeRecords()),t(!0)}),s(function(){i=0,r=l("CLS",0),t=v(e,r,P,n.reportAllChanges),m(function(){return t()})}),setTimeout(t,0))}))},F=0,k=1/0,M=0,D=function(e){e.forEach(function(e){e.interactionId&&(k=Math.min(k,e.interactionId),M=Math.max(M,e.interactionId),F=M?(M-k)/7+1:0)})},B=function(){return r?F:performance.interactionCount||0},R=function(){"interactionCount"in performance||r||(r=p("event",D,{type:"event",buffered:!0,durationThreshold:0}))},_=[],x=new Map,H=0,N=[],q=function(e){if(N.forEach(function(n){return n(e)}),e.interactionId||"first-input"===e.entryType){var n=_[_.length-1],t=x.get(e.interactionId);if(t||_.length<10||e.duration>n.latency){if(t)e.duration>t.latency?(t.entries=[e],t.latency=e.duration):e.duration===t.latency&&e.startTime===t.entries[0].startTime&&t.entries.push(e);else{var r={id:e.interactionId,latency:e.duration,entries:[e]};x.set(r.id,r),_.push(r)}_.sort(function(e,n){return n.latency-e.latency}),_.length>10&&_.splice(10).forEach(function(e){return x.delete(e.id)})}}},O=function(e){var n=self.requestIdleCallback||self.setTimeout,t=-1;return e=g(e),"hidden"===document.visibilityState?e():(t=n(e),h(e)),t},j=[200,500],z=function(e,n){"PerformanceEventTiming"in self&&"interactionId"in PerformanceEventTiming.prototype&&(n=n||{},S(function(){var t;R();var r,i=l("INP"),o=function(e){O(function(){e.forEach(q);var n=function(){var e=Math.min(_.length-1,Math.floor((B()-H)/50));return _[e]}();n&&n.latency!==i.value&&(i.value=n.latency,i.entries=n.entries,r())})},a=p("event",o,{durationThreshold:null!==(t=n.durationThreshold)&&void 0!==t?t:40});r=v(e,i,j,n.reportAllChanges),a&&(a.observe({type:"first-input",buffered:!0}),h(function(){o(a.takeRecords()),r(!0)}),s(function(){H=B(),_.length=0,x.clear(),i=l("INP"),r=v(e,i,j,n.reportAllChanges)}))}))},G=[2500,4e3],J={},K=function(e,n){n=n||{},S(function(){var t,r=L(),i=l("LCP"),o=function(e){n.reportAllChanges||(e=e.slice(-1)),e.forEach(function(e){e.startTime<r.firstHiddenTime&&(i.value=Math.max(e.startTime-d(),0),i.entries=[e],t())})},a=p("largest-contentful-paint",o);if(a){t=v(e,i,G,n.reportAllChanges);var c=g(function(){J[i.id]||(o(a.takeRecords()),a.disconnect(),J[i.id]=!0,t(!0))});["keydown","click"].forEach(function(e){addEventListener(e,function(){return O(c)},{once:!0,capture:!0})}),h(c),s(function(r){i=l("LCP"),t=v(e,i,G,n.reportAllChanges),m(function(){i.value=performance.now()-r.timeStamp,J[i.id]=!0,t(!0)})})}})},Q=[800,1800],U=function e(n){document.prerendering?S(function(){return e(n)}):"complete"!==document.readyState?addEventListener("load",function(){return e(n)},!0):setTimeout(n,0)},V=function(e,n){n=n||{};var t=l("TTFB"),r=v(e,t,Q,n.reportAllChanges);U(function(){var i=f();i&&(t.value=Math.max(i.responseStart-d(),0),t.entries=[i],r(!0),s(function(){t=l("TTFB",0),(r=v(e,t,Q,n.reportAllChanges))(!0)}))})},W={passive:!0,capture:!0},X=new Date,Y=function(e,n){i||(i=n,o=e,a=new Date,ee(removeEventListener),Z())},Z=function(){if(o>=0&&o<a-X){var e={entryType:"first-input",name:i.type,target:i.target,cancelable:i.cancelable,startTime:i.timeStamp,processingStart:i.timeStamp+o};c.forEach(function(n){n(e)}),c=[]}},$=function(e){if(e.cancelable){var n=(e.timeStamp>1e12?new Date:performance.now())-e.timeStamp;"pointerdown"==e.type?function(e,n){var t=function(){Y(e,n),i()},r=function(){i()},i=function(){removeEventListener("pointerup",t,W),removeEventListener("pointercancel",r,W)};addEventListener("pointerup",t,W),addEventListener("pointercancel",r,W)}(n,e):Y(n,e)}},ee=function(e){["mousedown","keydown","touchstart","pointerdown"].forEach(function(n){return e(n,$,W)})},ne=[100,300],te=function(e,n){n=n||{},S(function(){var t,r=L(),a=l("FID"),u=function(e){e.startTime<r.firstHiddenTime&&(a.value=e.processingStart-e.startTime,a.entries.push(e),t(!0))},f=function(e){e.forEach(u)},d=p("first-input",f);t=v(e,a,ne,n.reportAllChanges),d&&(h(g(function(){f(d.takeRecords()),d.disconnect()})),s(function(){var r;a=l("FID"),t=v(e,a,ne,n.reportAllChanges),c=[],o=-1,i=null,ee(addEventListener),r=u,c.push(r),Z()}))})}}}]);
|