inferno_core 0.4.29 → 0.4.31

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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-  data.tar.gz: afe5c2b4cf3603e54e4b085dc609f061d6e78bd929e1b4ee915294dcb0f87de6
+  metadata.gz: 2cc7cf96fbaba860fa20b9d3ce24ece91e898f06006974536c46d15d0f875888
+  data.tar.gz: 84eabfe9895b4dcd17d251b51e6cc7dceb9132ed7af66a3d0c707d6126e343ed
 SHA512:
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-  data.tar.gz: bb530410e8303d6fc82132c0f8c3da0fc63987ac6ba48b2be1023d8021ed7350a5158d3941e5bc7090136986248bae9134a64fbf8c6432352bb98ae839abff91
+  metadata.gz: 7772ee37760aed0f39a36972f0d6881166d7caef69d62b3df6f868f26d1f5948928dc8a05e392aaa35af11cb71f11cf7f18ed8d47fcefa1efa431f3685872319
+  data.tar.gz: bf9319e60aff26082d19e67260ca93bb0e39304111f63a1ece0e4307b52c55a6da8a3959e227ea61c2848607f58a2087b340533d6e690125789f0b565919724c

data/lib/inferno/apps/cli/new.rb

@@ -1,6 +1,7 @@
 require 'thor'
 require 'bundler'
 require_relative '../../utils/named_thor_actions'
+require_relative '../../utils/ig_downloader'
 require_relative '../../version'
 
 module Inferno
@@ -8,17 +9,27 @@ module Inferno
     class New < Thor::Group
       include Thor::Actions
       include Inferno::Utils::NamedThorActions
+      include Inferno::Utils::IgDownloader
 
       desc <<~HELP
         Generate a new Inferno test kit for FHIR software testing
 
         Examples:
 
-          `inferno new test_fhir_app`
-            => generates an Inferno app
+          `inferno new my_test_kit`
+            => generates an Inferno test kit
 
-          `inferno new test_my_ig -a MyName`
-            => generates Inferno app and specifies MyName as gemspec author
+          `inferno new test-us-core -i hl7.fhir.us.core@6.1.0`
+            => generates Inferno test kit with US Core 6.1.0 implementation guide
+
+          `inferno new TestMatching -i https://build.fhir.org/ig/HL7/fhir-identity-matching-ig/`
+            => generates Inferno test kit with an implementation guide from its continuous web build
+
+          `inferno new test-my-ig -a "My Name" -i file:///absolute/path/to/my/ig/package.tgz`
+            => generates Inferno test kit with a local IG and specifies My Name as gem author
+
+           `inferno new test_my_igs -a "My Name" -a "Another Name" -i file:///my/first/package.tgz -i hl7.fhir.us.core@6.1.0`
+            => generates Inferno test kit with multiple IGs and multiple authors
 
         https://inferno-framework.github.io/index.html
       HELP
@@ -45,15 +56,23 @@ module Inferno
                    type: :boolean,
                    aliases: '-b',
                    default: false,
-                   desc: 'Do not run bundle install'
+                   desc: 'Do not run bundle install or inferno migrate'
+      class_option :implementation_guide,
+                   type: :string,
+                   aliases: '-i',
+                   repeatable: true,
+                   desc: 'Load an Implementation Guide by FHIR Registry name, URL, or absolute path'
 
       add_runtime_options!
 
-      def create_app
+      def create_test_kit
         directory('.', root_name, { mode: :preserve, recursive: true, verbose: !options['quiet'] })
 
-        bundle_install
-        inferno_migrate
+        inside(root_name) do
+          bundle_install
+          inferno_migrate
+          load_igs
+        end
 
         say_unless_quiet "Created #{root_name} Inferno test kit!", :green
 
@@ -65,10 +84,6 @@ module Inferno
 
       private
 
-      def ig_path
-        File.join('lib', library_name, 'igs')
-      end
-
       def authors
         options['author'].presence || [default_author]
       end
@@ -80,18 +95,27 @@ module Inferno
       def bundle_install
         return if options['skip_bundle']
 
-        inside(root_name) do
-          Bundler.with_unbundled_env do
-            run 'bundle install', verbose: !options['quiet'], capture: options['quiet']
-          end
+        Bundler.with_unbundled_env do
+          run 'bundle install', verbose: !options['quiet'], capture: options['quiet']
         end
       end
 
       def inferno_migrate
         return if options['skip_bundle']
 
-        inside(root_name) do
-          run 'bundle exec inferno migrate', verbose: !options['quiet'], capture: options['quiet']
+        run 'bundle exec inferno migrate', verbose: !options['quiet'], capture: options['quiet']
+      end
+
+      def load_igs
+        config = { verbose: !options['quiet'] }
+        options['implementation_guide']&.each_with_index do |ig, idx|
+          uri = options['implementation_guide'].length == 1 ? load_ig(ig, nil, config) : load_ig(ig, idx, config)
+          say_unless_quiet "Downloaded IG from #{uri}"
+        rescue OpenURI::HTTPError => e
+          say_unless_quiet "Failed to install implementation guide #{ig}", :red
+          say_unless_quiet e.message, :red
+        rescue StandardError => e
+          say_unless_quiet e.message, :red
         end
       end
 

data/lib/inferno/apps/cli/templates/%library_name%.gemspec.tt

@@ -0,0 +1,26 @@
+Gem::Specification.new do |spec|
+  spec.name          = '<%= library_name %>'
+  spec.version       = '0.0.1'
+  spec.authors       = <%= authors %>
+  # spec.email         = ['TODO']
+  spec.date          = Time.now.utc.strftime('%Y-%m-%d')
+  spec.summary       = '<%= title_name %> Test Kit'
+  spec.description   = '<%= human_name %> Inferno test kit for FHIR'
+  # spec.homepage      = 'TODO'
+  spec.license       = 'Apache-2.0'
+  spec.add_runtime_dependency 'inferno_core', '~> <%= Inferno::VERSION %>'
+  spec.add_development_dependency 'database_cleaner-sequel', '~> 1.8'
+  spec.add_development_dependency 'factory_bot', '~> 6.1'
+  spec.add_development_dependency 'rspec', '~> 3.10'
+  spec.add_development_dependency 'webmock', '~> 3.11'
+  spec.required_ruby_version = Gem::Requirement.new('>= 3.1.2')
+  # spec.metadata['homepage_uri'] = spec.homepage
+  # spec.metadata['source_code_uri'] = 'TODO'
+  spec.files = [
+    Dir['lib/**/*.rb'],
+    Dir['lib/**/*.json'],
+    'LICENSE'
+  ].flatten
+
+  spec.require_paths = ['lib']
+end

data/lib/inferno/apps/cli/templates/Dockerfile.tt

@@ -0,0 +1,22 @@
+FROM ruby:3.1.2
+
+ENV INSTALL_PATH=/opt/inferno/
+ENV APP_ENV=production
+RUN mkdir -p $INSTALL_PATH
+
+WORKDIR $INSTALL_PATH
+
+ADD *.gemspec $INSTALL_PATH
+ADD Gemfile* $INSTALL_PATH
+RUN gem install bundler
+# The below RUN line is commented out for development purposes, because any change to the 
+# required gems will break the dockerfile build process.
+# If you want to run in Deploy mode, just run `bundle install` locally to update 
+# Gemfile.lock, and uncomment the following line.
+# RUN bundle config set --local deployment 'true'
+RUN bundle install
+
+ADD . $INSTALL_PATH
+
+EXPOSE 4567
+CMD ["bundle", "exec", "puma"]

data/lib/inferno/apps/cli/templates/Gemfile.tt

@@ -0,0 +1,9 @@
+# frozen_string_literal: true
+
+source "https://rubygems.org"
+
+gemspec
+
+group :development, :test do
+  gem 'debug'
+end

data/lib/inferno/apps/cli/templates/LICENSE.tt

@@ -0,0 +1,201 @@
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data/lib/inferno/apps/cli/templates/Procfile.tt

@@ -0,0 +1,2 @@
+web: bundle exec puma
+worker: bundle exec sidekiq -r ./worker.rb

data/lib/inferno/apps/cli/templates/README.md.tt

@@ -0,0 +1,41 @@
+# <%= title_name %> Test Kit
+
+<%= human_name %> [Inferno](https://github.com/inferno-community/inferno-core) test kit
+for FHIR testing.
+
+## Documentation
+- [Inferno documentation](https://inferno-framework.github.io/inferno-core/)
+- [Ruby API documentation](https://inferno-framework.github.io/inferno-core/docs)
+- [JSON API documentation](https://inferno-framework.github.io/inferno-core/api-docs)
+
+## Instructions for Developing tests
+
+To get started writing tests, click "Use this template" on
+github or use the Ruby-based command: `gem install inferno_core && inferno new my-test-kit`.
+Refer to the Inferno documentation for information about [setting up your development
+environment and running
+Inferno](https://inferno-framework.github.io/inferno-core/getting-started.html#getting-started-for-inferno-test-writers).
+
+## Example Inferno test kits
+
+- https://github.com/inferno-community/ips-test-kit
+- https://github.com/inferno-community/shc-vaccination-test-kit
+
+## License
+Copyright <%= Time.now.year %> TODO
+
+Licensed under the Apache License, Version 2.0 (the "License"); you may not use
+this file except in compliance with the License. You may obtain a copy of the
+License at
+```
+http://www.apache.org/licenses/LICENSE-2.0
+```
+Unless required by applicable law or agreed to in writing, software distributed
+under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR
+CONDITIONS OF ANY KIND, either express or implied. See the License for the
+specific language governing permissions and limitations under the License.
+
+## Trademark Notice
+
+HL7, FHIR and the FHIR [FLAME DESIGN] are the registered trademarks of Health
+Level Seven International and their use does not constitute endorsement by HL7.

data/lib/inferno/apps/cli/templates/Rakefile.tt

@@ -0,0 +1,15 @@
+begin
+  require 'rspec/core/rake_task'
+  RSpec::Core::RakeTask.new(:spec)
+  task default: :spec
+rescue LoadError # rubocop:disable Lint/SuppressedException
+end
+
+namespace :db do
+  desc 'Apply changes to the database'
+  task :migrate do
+    require 'inferno/config/application'
+    require 'inferno/utils/migration'
+    Inferno::Utils::Migration.new.run
+  end
+end

data/lib/inferno/apps/cli/templates/config/database.yml.tt

@@ -0,0 +1,18 @@
+development:
+  adapter: sqlite
+  database: data/inferno_development.db
+  max_connections: 10
+  # user:
+  # password:
+  # host:
+  # port:
+
+production:
+  adapter: sqlite
+  database: data/inferno_production.db
+  max_connections: 10
+
+test:
+  adapter: sqlite
+  database: ':memory:'
+  max_connections: 10

data/lib/inferno/apps/cli/templates/config/nginx.background.conf.tt

@@ -0,0 +1,86 @@
+# this sets the user nginx will run as,
+#and the number of worker processes
+user nobody nogroup;
+worker_processes  2;
+#user www-data;
+#worker_processes auto;
+
+# setup where nginx will log errors to
+# and where the nginx process id resides
+error_log  /var/log/nginx/error.log;
+pid        /var/run/nginx.pid;
+
+events {
+  worker_connections  1024;
+  # set to on if you have more than 1 worker_processes
+  accept_mutex on;
+}
+
+http {
+  include       /etc/nginx/mime.types;
+
+  default_type application/octet-stream;
+  access_log /tmp/nginx.access.log combined;
+
+  # use the kernel sendfile
+  # sendfile        on;  # this causes over-caching because modified timestamps lost in VM
+  # prepend http headers before sendfile()
+  tcp_nopush     on;
+
+  keepalive_timeout  600;
+  tcp_nodelay        on;
+
+  gzip  on;
+  gzip_vary on;
+  gzip_min_length 500;
+
+  gzip_disable "MSIE [1-6]\.(?!.*SV1)";
+  gzip_types text/plain text/xml text/css
+     text/comma-separated-values
+     text/javascript application/x-javascript
+     application/atom+xml image/x-icon;
+
+  # configure the virtual host
+  server {
+    # replace with your domain name
+    # server_name inferno-server;
+
+    # port to listen for requests on
+    listen 80;
+
+    # maximum accepted body size of client request
+    client_max_body_size 4G;
+    # the server will close connections after this time
+    keepalive_timeout 600;
+
+    location /validator {
+      proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+      proxy_set_header Host $http_host;
+      proxy_set_header X-Forwarded-Proto $scheme;
+      proxy_set_header X-Forwarded-Port $server_port;
+      proxy_redirect off;
+      proxy_set_header Connection '';
+      proxy_http_version 1.1;
+      chunked_transfer_encoding off;
+      proxy_buffering off;
+      proxy_cache off;
+
+      proxy_pass http://fhir_validator_app;
+    }
+
+    location /validatorapi/ {
+      proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+      proxy_set_header Host $http_host;
+      proxy_set_header X-Forwarded-Proto $scheme;
+      proxy_set_header X-Forwarded-Port $server_port;
+      proxy_redirect off;
+      proxy_set_header Connection '';
+      proxy_http_version 1.1;
+      chunked_transfer_encoding off;
+      proxy_buffering off;
+      proxy_cache off;
+
+      proxy_pass http://validator_service:4567/;
+    }
+  }
+}

data/lib/inferno/apps/cli/templates/config/nginx.conf.tt

@@ -0,0 +1,101 @@
+# this sets the user nginx will run as,
+#and the number of worker processes
+user nobody nogroup;
+worker_processes  2;
+#user www-data;
+#worker_processes auto;
+
+# setup where nginx will log errors to
+# and where the nginx process id resides
+error_log  /var/log/nginx/error.log;
+pid        /var/run/nginx.pid;
+
+events {
+  worker_connections  1024;
+  # set to on if you have more than 1 worker_processes
+  accept_mutex on;
+}
+
+http {
+  include       /etc/nginx/mime.types;
+
+  default_type application/octet-stream;
+  access_log /tmp/nginx.access.log combined;
+
+  # use the kernel sendfile
+  # sendfile        on;  # this causes over-caching because modified timestamps lost in VM
+  # prepend http headers before sendfile()
+  tcp_nopush     on;
+
+  keepalive_timeout  600;
+  tcp_nodelay        on;
+
+  gzip  on;
+  gzip_vary on;
+  gzip_min_length 500;
+
+  gzip_disable "MSIE [1-6]\.(?!.*SV1)";
+  gzip_types text/plain text/xml text/css
+     text/comma-separated-values
+     text/javascript application/x-javascript
+     application/atom+xml image/x-icon;
+
+  # configure the virtual host
+  server {
+    # replace with your domain name
+    # server_name inferno-server;
+
+    # port to listen for requests on
+    listen 80;
+
+    # maximum accepted body size of client request
+    client_max_body_size 4G;
+    # the server will close connections after this time
+    keepalive_timeout 600;
+
+    location / {
+      proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+      proxy_set_header Host $http_host;
+      proxy_set_header X-Forwarded-Proto $scheme;
+      proxy_set_header X-Forwarded-Port $server_port;
+      proxy_redirect off;
+      proxy_set_header Connection '';
+      proxy_http_version 1.1;
+      chunked_transfer_encoding off;
+      proxy_buffering off;
+      proxy_cache off;
+
+      proxy_pass http://inferno:4567;
+    }
+
+    location /validator {
+      proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+      proxy_set_header Host $http_host;
+      proxy_set_header X-Forwarded-Proto $scheme;
+      proxy_set_header X-Forwarded-Port $server_port;
+      proxy_redirect off;
+      proxy_set_header Connection '';
+      proxy_http_version 1.1;
+      chunked_transfer_encoding off;
+      proxy_buffering off;
+      proxy_cache off;
+
+      proxy_pass http://fhir_validator_app;
+    }
+
+    location /validatorapi/ {
+      proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
+      proxy_set_header Host $http_host;
+      proxy_set_header X-Forwarded-Proto $scheme;
+      proxy_set_header X-Forwarded-Port $server_port;
+      proxy_redirect off;
+      proxy_set_header Connection '';
+      proxy_http_version 1.1;
+      chunked_transfer_encoding off;
+      proxy_buffering off;
+      proxy_cache off;
+
+      proxy_pass http://validator_service:4567/;
+    }
+  }
+}

data/lib/inferno/apps/cli/templates/config/puma.rb.tt

@@ -0,0 +1,2 @@
+environment ENV.fetch('APP_ENV', 'development')
+port ENV.fetch('INFERNO_PORT', 4567)

data/lib/inferno/apps/cli/templates/config.ru.tt

@@ -0,0 +1,11 @@
+require 'inferno'
+
+use Rack::Static,
+    urls: Inferno::Utils::StaticAssets.static_assets_map,
+    root: Inferno::Utils::StaticAssets.inferno_path
+
+Inferno::Application.finalize!
+
+use Inferno::Utils::Middleware::RequestLogger
+
+run Inferno::Web.app