inferno_core 0.2.0.rc4 → 0.3.0
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- checksums.yaml +4 -4
- data/lib/inferno/apps/web/controllers/test_runs/create.rb +33 -14
- data/lib/inferno/apps/web/index.html.erb +21 -1
- data/lib/inferno/apps/web/serializers/result.rb +4 -0
- data/lib/inferno/apps/web/serializers/test.rb +1 -1
- data/lib/inferno/apps/web/serializers/test_group.rb +1 -1
- data/lib/inferno/apps/web/serializers/test_suite.rb +1 -0
- data/lib/inferno/dsl/configurable.rb +22 -8
- data/lib/inferno/dsl/fhir_validation.rb +3 -1
- data/lib/inferno/dsl/input_output_handling.rb +185 -0
- data/lib/inferno/dsl/runnable.rb +24 -133
- data/lib/inferno/entities/input.rb +121 -0
- data/lib/inferno/entities/test.rb +5 -5
- data/lib/inferno/ext/fhir_models.rb +59 -0
- data/lib/inferno/public/bundle.js +15 -15
- data/lib/inferno/public/bundle.js.LICENSE.txt +2 -0
- data/lib/inferno/test_runner.rb +24 -2
- data/lib/inferno/utils/preset_template_generator.rb +4 -5
- data/lib/inferno/version.rb +2 -1
- data/spec/factories/result.rb +1 -0
- metadata +11 -8
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
|
1
1
|
---
|
2
2
|
SHA256:
|
3
|
-
metadata.gz:
|
4
|
-
data.tar.gz:
|
3
|
+
metadata.gz: d2c456ff669a788bd2a8929015f4498fd15a2bd88a8668761581b75e1bcdceb5
|
4
|
+
data.tar.gz: a6d1d9de9471fa6e924820ec08b52ec1bf64e5f877e076e371d01ddc8222b0c3
|
5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: 91594cc9761d5edd625f706b46f52308b18eae2b5181dec45028e31d0eac447d7196b8ec5c1b3b09e6a63a7ed7e8436e085934ac05217991b847603a42d0f3a3
|
7
|
+
data.tar.gz: 3d3d36c97e63e9f4434a9c4a448d9a7095a6c0fc36b9473b16aaff09c3eb9b77aca6f47527883c3a89d62234044fae3b434e0cdd9f8e34af5cc9983daa70032e
|
@@ -11,6 +11,36 @@ module Inferno
|
|
11
11
|
|
12
12
|
PARAMS = [:test_session_id, :test_suite_id, :test_group_id, :test_id].freeze
|
13
13
|
|
14
|
+
def verify_runnable(runnable, inputs)
|
15
|
+
missing_inputs = runnable&.missing_inputs(inputs)
|
16
|
+
user_runnable = runnable&.user_runnable?
|
17
|
+
raise Inferno::Exceptions::RequiredInputsNotFound, missing_inputs if missing_inputs&.any?
|
18
|
+
raise Inferno::Exceptions::NotUserRunnableException unless user_runnable
|
19
|
+
end
|
20
|
+
|
21
|
+
def persist_inputs(params, test_run)
|
22
|
+
params[:inputs]&.each do |input_params|
|
23
|
+
input =
|
24
|
+
test_run.runnable.available_inputs
|
25
|
+
.find { |_, runnable_input| runnable_input.name == input_params[:name] }
|
26
|
+
&.last
|
27
|
+
|
28
|
+
if input.nil?
|
29
|
+
Inferno::Application['logger'].warning(
|
30
|
+
"Unknown input `#{input_params[:name]}` for #{test_run.runnable.id}: #{test_run.runnable.title}"
|
31
|
+
)
|
32
|
+
next
|
33
|
+
end
|
34
|
+
|
35
|
+
session_data_repo.save(
|
36
|
+
test_session_id: test_run.test_session_id,
|
37
|
+
name: input.name,
|
38
|
+
value: input_params[:value],
|
39
|
+
type: input.type
|
40
|
+
)
|
41
|
+
end
|
42
|
+
end
|
43
|
+
|
14
44
|
def call(params)
|
15
45
|
test_session = test_sessions_repo.find(params[:test_session_id])
|
16
46
|
|
@@ -21,24 +51,13 @@ module Inferno
|
|
21
51
|
return
|
22
52
|
end
|
23
53
|
|
24
|
-
|
25
|
-
# and runnable are validated
|
26
|
-
test_run = repo.create(create_params(params).merge(status: 'queued'))
|
27
|
-
missing_inputs = test_run.runnable.missing_inputs(params[:inputs])
|
54
|
+
verify_runnable(repo.build_entity(create_params(params)).runnable, params[:inputs])
|
28
55
|
|
29
|
-
|
30
|
-
raise Inferno::Exceptions::NotUserRunnableException unless test_run.runnable.user_runnable?
|
56
|
+
test_run = repo.create(create_params(params).merge(status: 'queued'))
|
31
57
|
|
32
58
|
self.body = serialize(test_run)
|
33
59
|
|
34
|
-
params
|
35
|
-
session_data_repo.save(
|
36
|
-
test_session_id: test_session.id,
|
37
|
-
name: input[:name],
|
38
|
-
value: input[:value],
|
39
|
-
type: input[:type]
|
40
|
-
)
|
41
|
-
end
|
60
|
+
persist_inputs(params, test_run)
|
42
61
|
|
43
62
|
Jobs.perform(Jobs::ExecuteTestRun, test_run.id)
|
44
63
|
rescue Sequel::ValidationFailed, Sequel::ForeignKeyConstraintViolation,
|
@@ -25,11 +25,31 @@
|
|
25
25
|
work correctly both with client-side routing and a non-root public URL.
|
26
26
|
Learn how to configure a non-root public URL by running `npm run build`.
|
27
27
|
-->
|
28
|
+
<style>
|
29
|
+
.wrapper {
|
30
|
+
height: 100%;
|
31
|
+
display: flex;
|
32
|
+
flex-direction: column;
|
33
|
+
}
|
34
|
+
.banner {
|
35
|
+
flex-shrink: 1;
|
36
|
+
}
|
37
|
+
.app {
|
38
|
+
flex-grow: 1;
|
39
|
+
display: flex;
|
40
|
+
flex-direction: column;
|
41
|
+
}
|
42
|
+
</style>
|
28
43
|
<title>Inferno</title>
|
29
44
|
</head>
|
30
45
|
<body>
|
31
46
|
<noscript>You need to enable JavaScript to run this app.</noscript>
|
32
|
-
<div
|
47
|
+
<div class='wrapper'>
|
48
|
+
<% if File.exist? (File.join(Dir.pwd, 'config', 'banner.html.erb')) %>
|
49
|
+
<div class='banner'><%= ERB.new(File.read(File.join(Dir.pwd, 'config', 'banner.html.erb'))).result %></div>
|
50
|
+
<% end %>
|
51
|
+
<div class='app' id="root"></div>
|
52
|
+
</div>
|
33
53
|
<!--
|
34
54
|
This HTML file is a template.
|
35
55
|
If you open it directly in the browser, you will see an empty page.
|
@@ -18,6 +18,10 @@ module Inferno
|
|
18
18
|
field :updated_at
|
19
19
|
field :optional?, name: :optional
|
20
20
|
|
21
|
+
field :inputs do |result, _options|
|
22
|
+
result.input_json.present? ? JSON.parse(result.input_json) : []
|
23
|
+
end
|
24
|
+
|
21
25
|
field :outputs do |result, _options|
|
22
26
|
result.output_json.present? ? JSON.parse(result.output_json) : []
|
23
27
|
end
|
@@ -7,7 +7,7 @@ module Inferno
|
|
7
7
|
field :short_id
|
8
8
|
field :title
|
9
9
|
field :short_title
|
10
|
-
field :
|
10
|
+
field :available_inputs, name: :inputs, extractor: HashValueExtractor, blueprint: Input
|
11
11
|
field :output_definitions, name: :outputs, extractor: HashValueExtractor
|
12
12
|
field :description
|
13
13
|
field :short_description
|
@@ -17,7 +17,7 @@ module Inferno
|
|
17
17
|
|
18
18
|
association :groups, name: :test_groups, blueprint: TestGroup
|
19
19
|
association :tests, blueprint: Test
|
20
|
-
field :
|
20
|
+
field :available_inputs, name: :inputs, extractor: HashValueExtractor, blueprint: Input
|
21
21
|
field :output_definitions, name: :outputs, extractor: HashValueExtractor
|
22
22
|
end
|
23
23
|
end
|
@@ -1,3 +1,5 @@
|
|
1
|
+
require_relative '../entities/input'
|
2
|
+
|
1
3
|
module Inferno
|
2
4
|
module DSL
|
3
5
|
# This module contains the DSL for managing runnable configuration.
|
@@ -35,7 +37,11 @@ module Inferno
|
|
35
37
|
new_configuration
|
36
38
|
end
|
37
39
|
|
38
|
-
self.configuration = configuration.deep_merge(config_to_apply)
|
40
|
+
self.configuration = configuration.deep_merge(config_to_apply.reject { |key, _| key == :inputs })
|
41
|
+
|
42
|
+
config_to_apply[:inputs]&.each do |identifier, new_input|
|
43
|
+
add_input(identifier, new_input.to_hash)
|
44
|
+
end
|
39
45
|
end
|
40
46
|
|
41
47
|
def options
|
@@ -49,28 +55,36 @@ module Inferno
|
|
49
55
|
end
|
50
56
|
|
51
57
|
def add_input(identifier, new_config = {})
|
52
|
-
existing_config =
|
53
|
-
|
58
|
+
existing_config = input(identifier)
|
59
|
+
|
60
|
+
if existing_config.nil?
|
61
|
+
return inputs[identifier] = Entities::Input.new(default_input_params(identifier).merge(new_config))
|
62
|
+
end
|
63
|
+
|
64
|
+
inputs[identifier] =
|
65
|
+
Entities::Input
|
66
|
+
.new(existing_config.to_hash)
|
67
|
+
.merge(Entities::Input.new(new_config))
|
54
68
|
end
|
55
69
|
|
56
|
-
def
|
70
|
+
def default_input_params(identifier)
|
57
71
|
{ name: identifier, type: 'text' }
|
58
72
|
end
|
59
73
|
|
60
|
-
def
|
74
|
+
def input_exists?(identifier)
|
61
75
|
inputs.key? identifier
|
62
76
|
end
|
63
77
|
|
64
|
-
def
|
78
|
+
def input(identifier)
|
65
79
|
inputs[identifier]
|
66
80
|
end
|
67
81
|
|
68
82
|
def input_name(identifier)
|
69
|
-
inputs
|
83
|
+
inputs[identifier]&.name
|
70
84
|
end
|
71
85
|
|
72
86
|
def input_type(identifier)
|
73
|
-
inputs
|
87
|
+
inputs[identifier]&.type
|
74
88
|
end
|
75
89
|
|
76
90
|
### Output Configuration ###
|
@@ -1,3 +1,5 @@
|
|
1
|
+
require_relative '../ext/fhir_models'
|
2
|
+
|
1
3
|
module Inferno
|
2
4
|
module DSL
|
3
5
|
# This module contains the methods needed to configure a validator to
|
@@ -168,7 +170,7 @@ module Inferno
|
|
168
170
|
def validate(resource, profile_url)
|
169
171
|
RestClient.post(
|
170
172
|
"#{url}/validate",
|
171
|
-
resource.
|
173
|
+
resource.source_contents,
|
172
174
|
params: { profile: profile_url }
|
173
175
|
).body
|
174
176
|
end
|
@@ -0,0 +1,185 @@
|
|
1
|
+
module Inferno
|
2
|
+
module DSL
|
3
|
+
module InputOutputHandling
|
4
|
+
# Define inputs
|
5
|
+
#
|
6
|
+
# @param identifier [Symbol] identifier for the input
|
7
|
+
# @param other_identifiers [Symbol] array of symbols if specifying multiple inputs
|
8
|
+
# @param input_params [Hash] options for input such as type, description, or title
|
9
|
+
# @option input_params [String] :title Human readable title for input
|
10
|
+
# @option input_params [String] :description Description for the input
|
11
|
+
# @option input_params [String] :type text | textarea | radio
|
12
|
+
# @option input_params [String] :default The default value for the input
|
13
|
+
# @option input_params [Boolean] :optional Set to true to not require input for test execution
|
14
|
+
# @option input_params [Hash] :options Possible input option formats based on input type
|
15
|
+
# @option options [Array] :list_options Array of options for input formats that require a list of possible values
|
16
|
+
# @return [void]
|
17
|
+
# @example
|
18
|
+
# input :patient_id, title: 'Patient ID', description: 'The ID of the patient being searched for',
|
19
|
+
# default: 'default_patient_id'
|
20
|
+
# @example
|
21
|
+
# input :textarea, title: 'Textarea Input Example', type: 'textarea', optional: true
|
22
|
+
def input(identifier, *other_identifiers, **input_params)
|
23
|
+
if other_identifiers.present?
|
24
|
+
[identifier, *other_identifiers].compact.each do |input_identifier|
|
25
|
+
inputs << input_identifier
|
26
|
+
config.add_input(input_identifier)
|
27
|
+
end
|
28
|
+
else
|
29
|
+
inputs << identifier
|
30
|
+
config.add_input(identifier, input_params)
|
31
|
+
end
|
32
|
+
end
|
33
|
+
|
34
|
+
# Define outputs
|
35
|
+
#
|
36
|
+
# @param identifier [Symbol] identifier for the output
|
37
|
+
# @param other_identifiers [Symbol] array of symbols if specifying multiple outputs
|
38
|
+
# @param output_definition [Hash] options for output
|
39
|
+
# @option output_definition [String] :type text | textarea | oauth_credentials
|
40
|
+
# @return [void]
|
41
|
+
# @example
|
42
|
+
# output :patient_id, :condition_id, :observation_id
|
43
|
+
# @example
|
44
|
+
# output :oauth_credentials, type: 'oauth_credentials'
|
45
|
+
def output(identifier, *other_identifiers, **output_definition)
|
46
|
+
if other_identifiers.present?
|
47
|
+
[identifier, *other_identifiers].compact.each do |output_identifier|
|
48
|
+
outputs << output_identifier
|
49
|
+
config.add_output(output_identifier)
|
50
|
+
end
|
51
|
+
else
|
52
|
+
outputs << identifier
|
53
|
+
config.add_output(identifier, output_definition)
|
54
|
+
end
|
55
|
+
end
|
56
|
+
|
57
|
+
# @private
|
58
|
+
def inputs
|
59
|
+
@inputs ||= []
|
60
|
+
end
|
61
|
+
|
62
|
+
# @private
|
63
|
+
def outputs
|
64
|
+
@outputs ||= []
|
65
|
+
end
|
66
|
+
|
67
|
+
# @private
|
68
|
+
def output_definitions
|
69
|
+
config.outputs.slice(*outputs)
|
70
|
+
end
|
71
|
+
|
72
|
+
# @private
|
73
|
+
def required_inputs
|
74
|
+
available_inputs
|
75
|
+
.reject { |_, input| input.optional }
|
76
|
+
.map { |_, input| input.name }
|
77
|
+
end
|
78
|
+
|
79
|
+
# @private
|
80
|
+
def missing_inputs(submitted_inputs)
|
81
|
+
submitted_inputs = [] if submitted_inputs.nil?
|
82
|
+
|
83
|
+
required_inputs.map(&:to_s) - submitted_inputs.map { |input| input[:name] }
|
84
|
+
end
|
85
|
+
|
86
|
+
# Define a particular order for inputs to be presented in the API/UI
|
87
|
+
# @example
|
88
|
+
# group do
|
89
|
+
# input :input1, :input2, :input3
|
90
|
+
# input_order :input3, :input2, :input1
|
91
|
+
# end
|
92
|
+
# @param new_input_order [Array<String,Symbol>]
|
93
|
+
# @return [Array<String, Symbol>]
|
94
|
+
def input_order(*new_input_order)
|
95
|
+
return @input_order = new_input_order if new_input_order.present?
|
96
|
+
|
97
|
+
@input_order ||= []
|
98
|
+
end
|
99
|
+
|
100
|
+
# @private
|
101
|
+
def order_available_inputs(original_inputs)
|
102
|
+
input_names = original_inputs.map { |_, input| input.name }.join(', ')
|
103
|
+
|
104
|
+
ordered_inputs =
|
105
|
+
input_order.each_with_object({}) do |input_name, inputs|
|
106
|
+
key, input = original_inputs.find { |_, input| input.name == input_name.to_s }
|
107
|
+
if input.nil?
|
108
|
+
Inferno::Application[:logger].error <<~ERROR
|
109
|
+
Error trying to order inputs in #{id}: #{title}:
|
110
|
+
- Unable to find input #{input_name} in available inputs: #{input_names}
|
111
|
+
ERROR
|
112
|
+
next
|
113
|
+
end
|
114
|
+
inputs[key] = original_inputs.delete(key)
|
115
|
+
end
|
116
|
+
|
117
|
+
original_inputs.each do |key, input|
|
118
|
+
ordered_inputs[key] = input
|
119
|
+
end
|
120
|
+
|
121
|
+
ordered_inputs
|
122
|
+
end
|
123
|
+
|
124
|
+
# @private
|
125
|
+
def all_outputs
|
126
|
+
outputs
|
127
|
+
.map { |output_identifier| config.output_name(output_identifier) }
|
128
|
+
.concat(children.flat_map(&:all_outputs))
|
129
|
+
.uniq
|
130
|
+
end
|
131
|
+
|
132
|
+
# @private
|
133
|
+
# Inputs available for this runnable's children. A running list of outputs
|
134
|
+
# created by the children is used to exclude any inputs which are provided
|
135
|
+
# by an earlier child's output.
|
136
|
+
def children_available_inputs
|
137
|
+
@children_available_inputs ||=
|
138
|
+
begin
|
139
|
+
child_outputs = []
|
140
|
+
children.each_with_object({}) do |child, definitions|
|
141
|
+
new_definitions = child.available_inputs.map(&:dup)
|
142
|
+
new_definitions.each do |input, new_definition|
|
143
|
+
existing_definition = definitions[input]
|
144
|
+
|
145
|
+
updated_definition =
|
146
|
+
if existing_definition.present?
|
147
|
+
existing_definition.merge_with_child(new_definition)
|
148
|
+
else
|
149
|
+
new_definition
|
150
|
+
end
|
151
|
+
|
152
|
+
next if child_outputs.include?(updated_definition.name.to_sym)
|
153
|
+
|
154
|
+
definitions[updated_definition.name.to_sym] = updated_definition
|
155
|
+
end
|
156
|
+
|
157
|
+
child_outputs.concat(child.all_outputs).uniq!
|
158
|
+
end
|
159
|
+
end
|
160
|
+
end
|
161
|
+
|
162
|
+
# @private
|
163
|
+
# Inputs available for the user for this runnable and all its children.
|
164
|
+
def available_inputs
|
165
|
+
@available_inputs ||=
|
166
|
+
begin
|
167
|
+
available_inputs =
|
168
|
+
config.inputs
|
169
|
+
.slice(*inputs)
|
170
|
+
.each_with_object({}) do |(_, input), inputs|
|
171
|
+
inputs[input.name.to_sym] = input
|
172
|
+
end
|
173
|
+
|
174
|
+
available_inputs.each do |input, current_definition|
|
175
|
+
child_definition = children_available_inputs[input]
|
176
|
+
current_definition.merge_with_child(child_definition)
|
177
|
+
end
|
178
|
+
|
179
|
+
available_inputs = children_available_inputs.merge(available_inputs)
|
180
|
+
order_available_inputs(available_inputs)
|
181
|
+
end
|
182
|
+
end
|
183
|
+
end
|
184
|
+
end
|
185
|
+
end
|
data/lib/inferno/dsl/runnable.rb
CHANGED
@@ -1,4 +1,5 @@
|
|
1
1
|
require_relative 'configurable'
|
2
|
+
require_relative 'input_output_handling'
|
2
3
|
require_relative 'resume_test_route'
|
3
4
|
require_relative '../utils/markdown_formatter'
|
4
5
|
|
@@ -20,6 +21,7 @@ module Inferno
|
|
20
21
|
def self.extended(extending_class)
|
21
22
|
super
|
22
23
|
extending_class.extend Configurable
|
24
|
+
extending_class.extend InputOutputHandling
|
23
25
|
|
24
26
|
extending_class.define_singleton_method(:inherited) do |subclass|
|
25
27
|
copy_instance_variables(subclass)
|
@@ -39,28 +41,35 @@ module Inferno
|
|
39
41
|
|
40
42
|
# Class instance variables are used to hold the metadata for Runnable
|
41
43
|
# classes. When inheriting from a Runnable class, these class instance
|
42
|
-
# variables need to be copied.
|
43
|
-
# need to be
|
44
|
+
# variables need to be copied. Some instance variables should not be
|
45
|
+
# copied, and will need to be repopulated from scratch on the new class.
|
46
|
+
# Any child Runnable classes will themselves need to be subclassed so that
|
47
|
+
# their parent can be updated.
|
48
|
+
VARIABLES_NOT_TO_COPY = [
|
49
|
+
:@id, # New runnable will have a different id
|
50
|
+
:@parent, # New runnable unlikely to have the same parent
|
51
|
+
:@children, # New subclasses have to be made for each child
|
52
|
+
:@test_count, # Needs to be recalculated
|
53
|
+
:@config, # Needs to be set by calling .config, which does extra work
|
54
|
+
:@available_inputs, # Needs to be recalculated
|
55
|
+
:@children_available_inputs # Needs to be recalculated
|
56
|
+
].freeze
|
57
|
+
|
44
58
|
# @private
|
45
59
|
def copy_instance_variables(subclass)
|
46
|
-
instance_variables
|
47
|
-
|
48
|
-
|
49
|
-
subclass.instance_variable_set(variable, instance_variable_get(variable).dup)
|
50
|
-
end
|
60
|
+
instance_variables
|
61
|
+
.reject { |variable| VARIABLES_NOT_TO_COPY.include? variable }
|
62
|
+
.each { |variable| subclass.instance_variable_set(variable, instance_variable_get(variable).dup) }
|
51
63
|
|
52
64
|
subclass.config(config)
|
53
65
|
|
54
|
-
|
55
|
-
|
56
|
-
|
57
|
-
subclass_child.parent = subclass
|
58
|
-
end
|
66
|
+
new_children = children.map do |child|
|
67
|
+
Class.new(child).tap do |subclass_child|
|
68
|
+
subclass_child.parent = subclass
|
59
69
|
end
|
60
|
-
|
61
|
-
subclass.instance_variable_set(:"@#{child_type}", new_children)
|
62
|
-
subclass.children.concat(new_children)
|
63
70
|
end
|
71
|
+
|
72
|
+
subclass.instance_variable_set(:@children, new_children)
|
64
73
|
end
|
65
74
|
|
66
75
|
# @private
|
@@ -253,36 +262,6 @@ module Inferno
|
|
253
262
|
@input_instructions = format_markdown(new_input_instructions)
|
254
263
|
end
|
255
264
|
|
256
|
-
# Define inputs
|
257
|
-
#
|
258
|
-
# @param identifier [Symbol] identifier for the input
|
259
|
-
# @param other_identifiers [Symbol] array of symbols if specifying multiple inputs
|
260
|
-
# @param input_definition [Hash] options for input such as type, description, or title
|
261
|
-
# @option input_definition [String] :title Human readable title for input
|
262
|
-
# @option input_definition [String] :description Description for the input
|
263
|
-
# @option input_definition [String] :type text | textarea | radio
|
264
|
-
# @option input_definition [String] :default The default value for the input
|
265
|
-
# @option input_definition [Boolean] :optional Set to true to not require input for test execution
|
266
|
-
# @option input_definition [Hash] :options Possible input option formats based on input type
|
267
|
-
# @option options [Array] :list_options Array of options for input formats that require a list of possible values
|
268
|
-
# @return [void]
|
269
|
-
# @example
|
270
|
-
# input :patient_id, title: 'Patient ID', description: 'The ID of the patient being searched for',
|
271
|
-
# default: 'default_patient_id'
|
272
|
-
# @example
|
273
|
-
# input :textarea, title: 'Textarea Input Example', type: 'textarea', optional: true
|
274
|
-
def input(identifier, *other_identifiers, **input_definition)
|
275
|
-
if other_identifiers.present?
|
276
|
-
[identifier, *other_identifiers].compact.each do |input_identifier|
|
277
|
-
inputs << input_identifier
|
278
|
-
config.add_input(input_identifier)
|
279
|
-
end
|
280
|
-
else
|
281
|
-
inputs << identifier
|
282
|
-
config.add_input(identifier, input_definition)
|
283
|
-
end
|
284
|
-
end
|
285
|
-
|
286
265
|
# Mark as optional. Tests are required by default.
|
287
266
|
#
|
288
267
|
# @param optional [Boolean]
|
@@ -317,62 +296,11 @@ module Inferno
|
|
317
296
|
!optional?
|
318
297
|
end
|
319
298
|
|
320
|
-
# Define outputs
|
321
|
-
#
|
322
|
-
# @param identifier [Symbol] identifier for the output
|
323
|
-
# @param other_identifiers [Symbol] array of symbols if specifying multiple outputs
|
324
|
-
# @param output_definition [Hash] options for output
|
325
|
-
# @option output_definition [String] :type text | textarea | oauth_credentials
|
326
|
-
# @return [void]
|
327
|
-
# @example
|
328
|
-
# output :patient_id, :condition_id, :observation_id
|
329
|
-
# @example
|
330
|
-
# output :oauth_credentials, type: 'oauth_credentials'
|
331
|
-
def output(identifier, *other_identifiers, **output_definition)
|
332
|
-
if other_identifiers.present?
|
333
|
-
[identifier, *other_identifiers].compact.each do |output_identifier|
|
334
|
-
outputs << output_identifier
|
335
|
-
config.add_output(output_identifier)
|
336
|
-
end
|
337
|
-
else
|
338
|
-
outputs << identifier
|
339
|
-
config.add_output(identifier, output_definition)
|
340
|
-
end
|
341
|
-
end
|
342
|
-
|
343
299
|
# @private
|
344
300
|
def default_id
|
345
301
|
to_s
|
346
302
|
end
|
347
303
|
|
348
|
-
# @private
|
349
|
-
def inputs
|
350
|
-
@inputs ||= []
|
351
|
-
end
|
352
|
-
|
353
|
-
# @private
|
354
|
-
def input_definitions
|
355
|
-
config.inputs.slice(*inputs)
|
356
|
-
end
|
357
|
-
|
358
|
-
# @private
|
359
|
-
def output_definitions
|
360
|
-
config.outputs.slice(*outputs)
|
361
|
-
end
|
362
|
-
|
363
|
-
# @private
|
364
|
-
def outputs
|
365
|
-
@outputs ||= []
|
366
|
-
end
|
367
|
-
|
368
|
-
# @private
|
369
|
-
def child_types
|
370
|
-
return [] if ancestors.include? Inferno::Entities::Test
|
371
|
-
return [:groups] if ancestors.include? Inferno::Entities::TestSuite
|
372
|
-
|
373
|
-
[:groups, :tests]
|
374
|
-
end
|
375
|
-
|
376
304
|
# @private
|
377
305
|
def children
|
378
306
|
@children ||= []
|
@@ -454,49 +382,12 @@ module Inferno
|
|
454
382
|
@test_count ||= children&.reduce(0) { |sum, child| sum + child.test_count } || 0
|
455
383
|
end
|
456
384
|
|
457
|
-
# @private
|
458
|
-
def required_inputs(prior_outputs = [])
|
459
|
-
required_inputs =
|
460
|
-
inputs
|
461
|
-
.reject { |input| input_definitions[input][:optional] }
|
462
|
-
.map { |input| config.input_name(input) }
|
463
|
-
.reject { |input| prior_outputs.include?(input) }
|
464
|
-
children_required_inputs = children.flat_map { |child| child.required_inputs(prior_outputs) }
|
465
|
-
prior_outputs.concat(outputs.map { |output| config.output_name(output) })
|
466
|
-
(required_inputs + children_required_inputs).flatten.uniq
|
467
|
-
end
|
468
|
-
|
469
|
-
# @private
|
470
|
-
def missing_inputs(submitted_inputs)
|
471
|
-
submitted_inputs = [] if submitted_inputs.nil?
|
472
|
-
|
473
|
-
required_inputs.map(&:to_s) - submitted_inputs.map { |input| input[:name] }
|
474
|
-
end
|
475
|
-
|
476
385
|
# @private
|
477
386
|
def user_runnable?
|
478
387
|
@user_runnable ||= parent.nil? ||
|
479
388
|
!parent.respond_to?(:run_as_group?) ||
|
480
389
|
(parent.user_runnable? && !parent.run_as_group?)
|
481
390
|
end
|
482
|
-
|
483
|
-
# @private
|
484
|
-
def available_input_definitions(prior_outputs = [])
|
485
|
-
available_input_definitions =
|
486
|
-
inputs
|
487
|
-
.each_with_object({}) do |input, definitions|
|
488
|
-
definitions[config.input_name(input)] =
|
489
|
-
config.input_config(input)
|
490
|
-
end
|
491
|
-
available_input_definitions.reject! { |input, _| prior_outputs.include? input }
|
492
|
-
|
493
|
-
children_available_input_definitions =
|
494
|
-
children.each_with_object({}) do |child, definitions|
|
495
|
-
definitions.merge!(child.available_input_definitions(prior_outputs))
|
496
|
-
end
|
497
|
-
prior_outputs.concat(outputs.map { |output| config.output_name(output) })
|
498
|
-
children_available_input_definitions.merge(available_input_definitions)
|
499
|
-
end
|
500
391
|
end
|
501
392
|
end
|
502
393
|
end
|