inferno_core 0.1.0.pre → 0.1.2.pre
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- checksums.yaml +4 -4
- data/lib/inferno/apps/web/controllers/test_runs/destroy.rb +39 -0
- data/lib/inferno/apps/web/router.rb +1 -1
- data/lib/inferno/apps/web/serializers/result.rb +1 -0
- data/lib/inferno/apps/web/serializers/test.rb +4 -0
- data/lib/inferno/apps/web/serializers/test_group.rb +4 -0
- data/lib/inferno/apps/web/serializers/test_suite.rb +3 -0
- data/lib/inferno/dsl/configurable.rb +4 -0
- data/lib/inferno/dsl/fhir_client.rb +14 -0
- data/lib/inferno/dsl/http_client.rb +62 -0
- data/lib/inferno/dsl/runnable.rb +67 -1
- data/lib/inferno/entities/has_runnable.rb +26 -0
- data/lib/inferno/entities/result.rb +8 -4
- data/lib/inferno/entities/test_group.rb +4 -6
- data/lib/inferno/entities/test_run.rb +2 -19
- data/lib/inferno/entities/test_suite.rb +3 -4
- data/lib/inferno/entities.rb +1 -0
- data/lib/inferno/public/bundle.js +9 -9
- data/lib/inferno/repositories/results.rb +4 -0
- data/lib/inferno/repositories/session_data.rb +1 -1
- data/lib/inferno/repositories/test_runs.rb +8 -0
- data/lib/inferno/result_summarizer.rb +40 -0
- data/lib/inferno/test_runner.rb +13 -7
- data/lib/inferno/version.rb +1 -1
- metadata +7 -4
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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|
1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: a39bd8f76f999212e451616afca215d50bd97c3051183a46356263b95b56ac0a
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4
|
+
data.tar.gz: 18bd6bf1a642fd950dbab94337f361b44b3ae54f611a2e2ef15ca61a871ebdc7
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5
5
|
SHA512:
|
6
|
-
metadata.gz:
|
7
|
-
data.tar.gz:
|
6
|
+
metadata.gz: fada61163e6b55d0d9f4a49be0ad1712bf9d788f3e9dee12f65716f554de8df508620088d396bc672aeff2b6c19328f113d477a0ee8b45fd5faa8d48d81de90b
|
7
|
+
data.tar.gz: d56a9fde79962c0f8900b9e0cb4acb50f90d687621bd344c75266aebe6e4ec977c7719a3a8661de4969aa28f7c96bff3882e2e12af4edc86c1abba06006b6292
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@@ -0,0 +1,39 @@
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|
1
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+
module Inferno
|
2
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+
module Web
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+
module Controllers
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4
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+
module TestRuns
|
5
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+
class Destroy < Controller
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6
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+
include Import[
|
7
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+
test_runs_repo: 'repositories.test_runs',
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8
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+
results_repo: 'repositories.results'
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9
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+
]
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10
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+
|
11
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+
def call(params)
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12
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+
test_run = test_runs_repo.find(params[:id])
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13
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+
|
14
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+
if test_run.nil? || ['done', 'cancelling'].include?(test_run.status)
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15
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+
# If it doesn't exist, already finished, or currently being cancelled
|
16
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+
self.status = 204
|
17
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+
return
|
18
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+
end
|
19
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+
|
20
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+
test_run_is_waiting = (test_run.status == 'waiting')
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21
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+
test_runs_repo.mark_as_cancelling(params[:id])
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22
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+
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23
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+
if test_run_is_waiting
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24
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+
waiting_result = results_repo.find_waiting_result(test_run_id: test_run.id)
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25
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+
results_repo.cancel_waiting_result(waiting_result.id, 'Test cancelled by user')
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26
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+
Jobs.perform(Jobs::ResumeTestRun, test_run.id)
|
27
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+
end
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28
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+
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+
self.status = 204
|
30
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+
rescue StandardError => e
|
31
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+
Application['logger'].error(e.full_message)
|
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+
self.body = { errors: e.message }.to_json
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+
self.status = 500
|
34
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+
end
|
35
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+
end
|
36
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+
end
|
37
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+
end
|
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+
end
|
39
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+
end
|
@@ -7,7 +7,7 @@ module Inferno
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7
7
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8
8
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Router = Hanami::Router.new(namespace: Inferno::Web::Controllers) do
|
9
9
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namespace 'api' do
|
10
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-
resources 'test_runs', only: [:create, :show] do
|
10
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+
resources 'test_runs', only: [:create, :show, :destroy] do
|
11
11
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resources 'results', only: [:index]
|
12
12
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end
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13
13
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@@ -4,10 +4,14 @@ module Inferno
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|
4
4
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class Test < Serializer
|
5
5
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identifier :id
|
6
6
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field :title
|
7
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+
field :short_title
|
7
8
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field :input_definitions, name: :inputs, extractor: HashValueExtractor, blueprint: Input
|
8
9
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field :output_definitions, name: :outputs, extractor: HashValueExtractor
|
9
10
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field :description
|
11
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+
field :short_description
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12
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+
field :input_instructions
|
10
13
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field :user_runnable?, name: :user_runnable
|
14
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+
field :optional?, name: :optional
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11
15
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end
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12
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end
|
13
17
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end
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@@ -5,10 +5,14 @@ module Inferno
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5
5
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identifier :id
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6
6
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|
7
7
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field :title
|
8
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+
field :short_title
|
8
9
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field :description
|
10
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+
field :short_description
|
11
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+
field :input_instructions
|
9
12
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field :test_count
|
10
13
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field :run_as_group?, name: :run_as_group
|
11
14
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field :user_runnable?, name: :user_runnable
|
15
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+
field :optional?, name: :optional
|
12
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13
17
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association :groups, name: :test_groups, blueprint: TestGroup
|
14
18
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association :tests, blueprint: Test
|
@@ -131,6 +131,20 @@ module Inferno
|
|
131
131
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end
|
132
132
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end
|
133
133
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|
134
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+
# Perform a FHIR delete interaction.
|
135
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+
#
|
136
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+
# @param resource_type [String, Symbol, Class]
|
137
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+
# @param id [String]
|
138
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+
# @param client [Symbol]
|
139
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+
# @param name [Symbol] Name for this request to allow it to be used by
|
140
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+
# other tests
|
141
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+
# @return [Inferno::Entities::Request]
|
142
|
+
def fhir_delete(resource_type, id, client: :default, name: nil)
|
143
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+
store_request('outgoing', name) do
|
144
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+
fhir_client(client).destroy(fhir_class_from_resource_type(resource_type), id)
|
145
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+
end
|
146
|
+
end
|
147
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+
|
134
148
|
# @todo Make this a FHIR class method? Something like
|
135
149
|
# FHIR.class_for(resource_type)
|
136
150
|
# @api private
|
@@ -103,6 +103,68 @@ module Inferno
|
|
103
103
|
end
|
104
104
|
end
|
105
105
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|
106
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+
# Perform an HTTP DELETE request
|
107
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+
#
|
108
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+
# @param url [String] if this request is using a defined client, this will
|
109
|
+
# be appended to the client's url. Must be an absolute url for requests
|
110
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+
# made without a defined client
|
111
|
+
# @param client [Symbol]
|
112
|
+
# @param name [Symbol] Name for this request to allow it to be used by
|
113
|
+
# other tests
|
114
|
+
# @return [Inferno::Entities::Request]
|
115
|
+
def delete(url = '', client: :default, name: :nil, **options)
|
116
|
+
store_request('outgoing', name) do
|
117
|
+
client = http_client(client)
|
118
|
+
|
119
|
+
if client
|
120
|
+
client.delete(url, nil, options[:headers])
|
121
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+
elsif url.match?(%r{\Ahttps?://})
|
122
|
+
Faraday.delete(url, nil, options[:headers])
|
123
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+
else
|
124
|
+
raise StandardError, 'Must use an absolute url or define an HTTP client with a base url'
|
125
|
+
end
|
126
|
+
end
|
127
|
+
end
|
128
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+
|
129
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+
# Perform an HTTP GET request and stream the response
|
130
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+
#
|
131
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+
# @param block [Proc] A Proc object whose input will be the string chunks
|
132
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+
# received while streaming response to the get request.
|
133
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+
# @param url [String] If this request is using a defined client, this will
|
134
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+
# be appended to the client's url. Must be an absolute url for requests
|
135
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+
# made without a defined client
|
136
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+
# @param limit [Integer] The number of streamed-in chunks to be stored in
|
137
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+
# the response body. This optional input defaults to 100.
|
138
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+
# @param client [Symbol]
|
139
|
+
# @param name [Symbol] Name for this request to allow it to be used by
|
140
|
+
# other tests
|
141
|
+
# @option options [Hash] Input headers here - headers are optional and
|
142
|
+
# must be entered as the last piece of input to this method
|
143
|
+
# @return [Inferno::Entities::Request]
|
144
|
+
def stream(block, url = '', limit = 100, client: :default, name: nil, **options)
|
145
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+
streamed = []
|
146
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+
|
147
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+
collector = proc do |chunk, bytes|
|
148
|
+
streamed << chunk if limit.positive?
|
149
|
+
limit -= 1
|
150
|
+
block.call(chunk, bytes)
|
151
|
+
end
|
152
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+
|
153
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+
store_request('outgoing', name) do
|
154
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+
client = http_client(client)
|
155
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+
|
156
|
+
if client
|
157
|
+
response = client.get(url, nil, options[:headers]) { |req| req.options.on_data = collector }
|
158
|
+
elsif url.match?(%r{\Ahttps?://})
|
159
|
+
response = Faraday.get(url, nil, options[:headers]) { |req| req.options.on_data = collector }
|
160
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+
else
|
161
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+
raise StandardError, 'Must use an absolute url or define an HTTP client with a base url'
|
162
|
+
end
|
163
|
+
response.env.body = streamed.join
|
164
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+
response
|
165
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+
end
|
166
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+
end
|
167
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+
|
106
168
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module ClassMethods
|
107
169
|
# @private
|
108
170
|
def http_client_definitions
|
data/lib/inferno/dsl/runnable.rb
CHANGED
@@ -85,7 +85,6 @@ module Inferno
|
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85
85
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|
86
86
|
klass.parent = self
|
87
87
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|
88
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-
child_metadata[:collection] << klass
|
89
88
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children << klass
|
90
89
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91
90
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configure_child_class(klass, hash_args)
|
@@ -164,6 +163,8 @@ module Inferno
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164
163
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|
165
164
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klass.config(config)
|
166
165
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166
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+
klass.children.select!(&:required?) if hash_args.delete(:exclude_optional)
|
167
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+
|
167
168
|
hash_args.each do |key, value|
|
168
169
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if value.is_a? Array
|
169
170
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klass.send(key, *value)
|
@@ -212,6 +213,16 @@ module Inferno
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212
213
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@title = new_title
|
213
214
|
end
|
214
215
|
|
216
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+
# Set/Get a runnable's short title
|
217
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+
#
|
218
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+
# @param new_short_title [String]
|
219
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+
# @return [String] the short title
|
220
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+
def short_title(new_short_title = nil)
|
221
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+
return @short_title if new_short_title.nil?
|
222
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+
|
223
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+
@short_title = new_short_title
|
224
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+
end
|
225
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+
|
215
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# Set/Get a runnable's description
|
216
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#
|
217
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# @param new_description [String]
|
@@ -222,6 +233,26 @@ module Inferno
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|
222
233
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@description = format_markdown(new_description)
|
223
234
|
end
|
224
235
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|
236
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+
# Set/Get a runnable's short one-sentence description
|
237
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+
#
|
238
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+
# @param new_short_description [String]
|
239
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+
# @return [String] the one-sentence description
|
240
|
+
def short_description(new_short_description = nil)
|
241
|
+
return @short_description if new_short_description.nil?
|
242
|
+
|
243
|
+
@short_description = format_markdown(new_short_description)
|
244
|
+
end
|
245
|
+
|
246
|
+
# Set/Get a runnable's input instructions
|
247
|
+
#
|
248
|
+
# @param new_input_instructions [String]
|
249
|
+
# @return [String] the input instructions
|
250
|
+
def input_instructions(new_input_instructions = nil)
|
251
|
+
return @input_instructions if new_input_instructions.nil?
|
252
|
+
|
253
|
+
@input_instructions = format_markdown(new_input_instructions)
|
254
|
+
end
|
255
|
+
|
225
256
|
# Define inputs
|
226
257
|
#
|
227
258
|
# @param identifier [Symbol] identifier for the input
|
@@ -252,6 +283,40 @@ module Inferno
|
|
252
283
|
end
|
253
284
|
end
|
254
285
|
|
286
|
+
# Mark as optional. Tests are required by default.
|
287
|
+
#
|
288
|
+
# @param optional [Boolean]
|
289
|
+
# @return [void]
|
290
|
+
#
|
291
|
+
def optional(optional = true) # rubocop:disable Style/OptionalBooleanParameter
|
292
|
+
@optional = optional
|
293
|
+
end
|
294
|
+
|
295
|
+
# Mark as required
|
296
|
+
#
|
297
|
+
# Tests are required by default. This method is provided to make an
|
298
|
+
# existing optional test required.
|
299
|
+
#
|
300
|
+
# @param required[Boolean]
|
301
|
+
# @return [void]
|
302
|
+
def required(required = true) # rubocop:disable Style/OptionalBooleanParameter
|
303
|
+
@optional = !required
|
304
|
+
end
|
305
|
+
|
306
|
+
# The test or group is optional if true
|
307
|
+
#
|
308
|
+
# @return [Boolean]
|
309
|
+
def optional?
|
310
|
+
!!@optional
|
311
|
+
end
|
312
|
+
|
313
|
+
# The test or group is required if true
|
314
|
+
#
|
315
|
+
# @return [Boolean]
|
316
|
+
def required?
|
317
|
+
!optional?
|
318
|
+
end
|
319
|
+
|
255
320
|
# Define outputs
|
256
321
|
#
|
257
322
|
# @param identifier [Symbol] identifier for the output
|
@@ -407,6 +472,7 @@ module Inferno
|
|
407
472
|
required_inputs.map(&:to_s) - submitted_inputs.map { |input| input[:name] }
|
408
473
|
end
|
409
474
|
|
475
|
+
# @private
|
410
476
|
def user_runnable?
|
411
477
|
@user_runnable ||= parent.nil? ||
|
412
478
|
!parent.respond_to?(:run_as_group?) ||
|
@@ -0,0 +1,26 @@
|
|
1
|
+
module Inferno
|
2
|
+
module Entities
|
3
|
+
module HasRunnable
|
4
|
+
# Returns the Test, TestGroup, or TestSuite associated with this entity
|
5
|
+
#
|
6
|
+
# @return [Inferno::Entities::Test, Inferno::Entities::TestGroup, Inferno::Entities::TestSuite]
|
7
|
+
def runnable
|
8
|
+
return @runnable if @runnable
|
9
|
+
|
10
|
+
@runnable = (test || test_group || test_suite || load_runnable)
|
11
|
+
end
|
12
|
+
|
13
|
+
private
|
14
|
+
|
15
|
+
def load_runnable
|
16
|
+
if test_id.present?
|
17
|
+
@test = Inferno::Repositories::Tests.new.find(test_id)
|
18
|
+
elsif test_group_id.present?
|
19
|
+
@test_group = Inferno::Repositories::TestGroups.new.find(test_group_id)
|
20
|
+
elsif test_suite_id.present?
|
21
|
+
@test_suite = Inferno::Repositories::TestSuites.new.find(test_suite_id)
|
22
|
+
end
|
23
|
+
end
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
@@ -47,9 +47,10 @@ module Inferno
|
|
47
47
|
:test_session_id, :result, :result_message, :messages, :requests,
|
48
48
|
:input_json, :output_json
|
49
49
|
].freeze
|
50
|
-
RESULT_OPTIONS = ['cancel', 'wait', 'running', 'error', 'fail', 'skip', '
|
50
|
+
RESULT_OPTIONS = ['cancel', 'wait', 'running', 'error', 'fail', 'skip', 'pass', 'omit'].freeze
|
51
51
|
|
52
52
|
include Inferno::Entities::Attributes
|
53
|
+
include Inferno::Entities::HasRunnable
|
53
54
|
|
54
55
|
def initialize(params)
|
55
56
|
super(params, ATTRIBUTES - [:messages, :requests])
|
@@ -58,9 +59,12 @@ module Inferno
|
|
58
59
|
@requests = (params[:requests] || []).map { |request| Request.new(request) }
|
59
60
|
end
|
60
61
|
|
61
|
-
|
62
|
-
|
63
|
-
|
62
|
+
def optional?
|
63
|
+
runnable.optional?
|
64
|
+
end
|
65
|
+
|
66
|
+
def required?
|
67
|
+
!optional?
|
64
68
|
end
|
65
69
|
|
66
70
|
# @return [Boolean]
|
@@ -32,11 +32,11 @@ module Inferno
|
|
32
32
|
end
|
33
33
|
|
34
34
|
def groups
|
35
|
-
|
35
|
+
children.select { |child| child < Inferno::Entities::TestGroup }
|
36
36
|
end
|
37
37
|
|
38
38
|
def tests
|
39
|
-
|
39
|
+
children.select { |child| child < Inferno::Entities::Test }
|
40
40
|
end
|
41
41
|
|
42
42
|
# Methods to configure Inferno::DSL::Runnable
|
@@ -54,16 +54,14 @@ module Inferno
|
|
54
54
|
def group_metadata
|
55
55
|
{
|
56
56
|
class: TestGroup,
|
57
|
-
repo: repository
|
58
|
-
collection: groups
|
57
|
+
repo: repository
|
59
58
|
}
|
60
59
|
end
|
61
60
|
|
62
61
|
def test_metadata
|
63
62
|
{
|
64
63
|
class: Test,
|
65
|
-
repo: Inferno::Repositories::Tests.new
|
66
|
-
collection: tests
|
64
|
+
repo: Inferno::Repositories::Tests.new
|
67
65
|
}
|
68
66
|
end
|
69
67
|
|
@@ -32,7 +32,7 @@ module Inferno
|
|
32
32
|
# @return [String, nil] identfier for a waiting `TestRun`
|
33
33
|
# @!attribute wait_timeout
|
34
34
|
class TestRun < Entity
|
35
|
-
STATUS_OPTIONS = ['queued', 'running', 'waiting', 'done'].freeze
|
35
|
+
STATUS_OPTIONS = ['queued', 'running', 'waiting', 'cancelling', 'done'].freeze
|
36
36
|
ATTRIBUTES = [
|
37
37
|
:id,
|
38
38
|
:test_session_id,
|
@@ -52,6 +52,7 @@ module Inferno
|
|
52
52
|
].freeze
|
53
53
|
|
54
54
|
include Inferno::Entities::Attributes
|
55
|
+
include Inferno::Entities::HasRunnable
|
55
56
|
|
56
57
|
attr_accessor :test_session
|
57
58
|
|
@@ -63,12 +64,6 @@ module Inferno
|
|
63
64
|
@test_session = params[:test_session]
|
64
65
|
end
|
65
66
|
|
66
|
-
def runnable
|
67
|
-
return @runnable if @runnable
|
68
|
-
|
69
|
-
@runnable = (test || test_group || test_suite || load_runnable)
|
70
|
-
end
|
71
|
-
|
72
67
|
def to_hash
|
73
68
|
super.merge(test_session: test_session).compact
|
74
69
|
end
|
@@ -76,18 +71,6 @@ module Inferno
|
|
76
71
|
def test_count
|
77
72
|
@test_count ||= runnable.test_count
|
78
73
|
end
|
79
|
-
|
80
|
-
private
|
81
|
-
|
82
|
-
def load_runnable
|
83
|
-
if test_id.present?
|
84
|
-
@test = Inferno::Repositories::Tests.new.find(test_id)
|
85
|
-
elsif test_group_id.present?
|
86
|
-
@test_group = Inferno::Repositories::TestGroups.new.find(test_group_id)
|
87
|
-
elsif test_suite_id.present?
|
88
|
-
@test_suite = Inferno::Repositories::TestSuites.new.find(test_suite_id)
|
89
|
-
end
|
90
|
-
end
|
91
74
|
end
|
92
75
|
end
|
93
76
|
end
|
@@ -22,7 +22,7 @@ module Inferno
|
|
22
22
|
return @default_group if @default_group
|
23
23
|
|
24
24
|
@default_group = Class.new(TestGroup)
|
25
|
-
|
25
|
+
children << @default_group
|
26
26
|
@default_group
|
27
27
|
end
|
28
28
|
|
@@ -31,7 +31,7 @@ module Inferno
|
|
31
31
|
end
|
32
32
|
|
33
33
|
def groups
|
34
|
-
|
34
|
+
children.select { |child| child < Inferno::Entities::TestGroup }
|
35
35
|
end
|
36
36
|
|
37
37
|
# Methods to configure Inferno::DSL::Runnable
|
@@ -44,8 +44,7 @@ module Inferno
|
|
44
44
|
def group_metadata
|
45
45
|
{
|
46
46
|
class: TestGroup,
|
47
|
-
repo: Inferno::Repositories::TestGroups.new
|
48
|
-
collection: groups
|
47
|
+
repo: Inferno::Repositories::TestGroups.new
|
49
48
|
}
|
50
49
|
end
|
51
50
|
|