inferno_core 0.0.7 → 0.0.8.pre
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- checksums.yaml +4 -4
- data/lib/inferno/apps/web/index.html.erb +1 -0
- data/lib/inferno/dsl/fhir_client.rb +18 -14
- data/lib/inferno/dsl/fhir_validation.rb +104 -0
- data/lib/inferno/public/217.bundle.js +1 -1
- data/lib/inferno/public/bundle.js +154 -1
- data/lib/inferno/public/bundle.js.LICENSE.txt +15 -0
- data/lib/inferno/utils/middleware/request_logger.rb +8 -2
- data/lib/inferno/version.rb +1 -1
- metadata +6 -6
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 225c877bb710ee45ff9e6da9875ff1d08a46945bd0836d26c45f9864f08d8d57
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4
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+
data.tar.gz: 6bf0f02557ca8a6403b1da40afe0efadce186b4bb70076e9927c7d6283310889
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 357187f80bb794cb9ec0052526544aa5b8de34081c800fa9f291f695738cf84b498167fba0c777203b1c3f2a1126753cbe4e6081d187e050c1342d7d2bca5e4b
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7
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+
data.tar.gz: f8ae794f5ac94fb712a5d2397a47fe4cf727232601feedcef4d17af24f404a01f34e9dcdd701c4b366062e8bba3f539ddb03842c6c2958cb583a40c2ffa9e319
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@@ -69,15 +69,15 @@ module Inferno
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69
69
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# @param client [Symbol]
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# @param name [Symbol] Name for this request to allow it to be used by
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# other tests
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-
# @
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-
# must be entered as the last piece of input to this method
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+
# @param headers [Hash] custom headers for this operation
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73
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# @return [Inferno::Entities::Request]
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75
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-
def fhir_operation(path, body: nil, client: :default, name: nil,
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74
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+
def fhir_operation(path, body: nil, client: :default, name: nil, headers: {})
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store_request('outgoing', name) do
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-
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-
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-
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80
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-
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operation_headers = fhir_client(client).fhir_headers
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+
operation_headers.merge!('Content-Type' => 'application/fhir+json') if body.present?
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78
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operation_headers.merge!(headers) if headers.present?
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+
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80
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fhir_client(client).send(:post, path, body, operation_headers)
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81
81
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end
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82
82
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end
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83
83
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@@ -86,9 +86,8 @@ module Inferno
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86
86
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# @param client [Symbol]
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# @param name [Symbol] Name for this request to allow it to be used by
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88
88
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# other tests
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89
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-
# @param _options [Hash] TODO
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90
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# @return [Inferno::Entities::Request]
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91
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-
def fhir_get_capability_statement(client: :default, name: nil
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|
90
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+
def fhir_get_capability_statement(client: :default, name: nil)
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92
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store_request('outgoing', name) do
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93
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fhir_client(client).conformance_statement
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fhir_client(client).reply
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@@ -102,9 +101,8 @@ module Inferno
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102
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# @param client [Symbol]
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# @param name [Symbol] Name for this request to allow it to be used by
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# other tests
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-
# @param _options [Hash] TODO
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104
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# @return [Inferno::Entities::Request]
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107
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-
def fhir_read(resource_type, id, client: :default, name: nil
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105
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+
def fhir_read(resource_type, id, client: :default, name: nil)
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108
106
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store_request('outgoing', name) do
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109
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fhir_client(client).read(fhir_class_from_resource_type(resource_type), id)
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end
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@@ -117,12 +115,18 @@ module Inferno
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# @param params [Hash] the search params
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# @param name [Symbol] Name for this request to allow it to be used by
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# other tests
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-
# @param
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118
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+
# @param search_method [Symbol] Use `:post` to search via POST
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121
119
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# @return [Inferno::Entities::Request]
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122
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-
def fhir_search(resource_type, client: :default, params: {}, name: nil,
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120
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+
def fhir_search(resource_type, client: :default, params: {}, name: nil, search_method: :get)
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search =
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122
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if search_method == :post
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{ body: params }
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else
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{ parameters: params }
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end
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store_request('outgoing', name) do
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124
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fhir_client(client)
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125
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-
.search(fhir_class_from_resource_type(resource_type),
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+
.search(fhir_class_from_resource_type(resource_type), { search: search })
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end
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end
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@@ -1,38 +1,113 @@
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1
1
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module Inferno
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2
2
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module DSL
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3
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# This module contains the methods needed to configure a validator to
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4
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# perform validation of FHIR resources. The actual validation is performed
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5
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# by an external FHIR validation service. Tests will typically rely on
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6
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# `assert_valid_resource` for validation rather than directly calling
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# methods on a validator.
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#
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9
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# @example
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#
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# validator do
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# url 'http://example.com/validator'
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# exclude_message { |message| message.type == 'info' }
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# perform_additional_validation do |resource, profile_url|
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# if something_is_wrong
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# { type: 'error', message: 'something is wrong' }
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# else
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# { type: 'info', message: 'everything is ok' }
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# end
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# end
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# end
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3
22
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module FHIRValidation
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4
23
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def self.included(klass)
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5
24
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klass.extend ClassMethods
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6
25
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end
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7
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27
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# Perform validation, and add validation messages to the runnable
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#
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# @param resource [FHIR::Model]
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# @param profile_url [String]
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# @param validator [Symbol] the name of the validator to use
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# @return [Boolean] whether the resource is valid
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8
33
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def resource_is_valid?(resource: self.resource, profile_url: nil, validator: :default)
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9
34
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find_validator(validator).resource_is_valid?(resource, profile_url, self)
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end
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# Find a particular validator. Looks through a runnable's parents up to
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# the suite to find a validator with a particular name
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12
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def find_validator(validator_name)
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13
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self.class.find_validator(validator_name)
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end
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class Validator
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# @private
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def initialize(&block)
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18
46
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instance_eval(&block)
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19
47
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end
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48
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+
# @private
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21
50
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def default_validator_url
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22
51
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ENV.fetch('VALIDATOR_URL')
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23
52
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end
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24
53
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54
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# Set the url of the validator service
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#
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# @param url [String]
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25
57
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def url(validator_url = nil)
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26
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@url = validator_url if validator_url
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@url
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29
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end
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# @private
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64
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def additional_validations
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65
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@additional_validations ||= []
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66
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+
end
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+
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# Perform validation steps in addition to FHIR validation.
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#
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# @example
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71
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# perform_additional_validation do |resource, profile_url|
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# if something_is_wrong
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# { type: 'error', message: 'something is wrong' }
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# else
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# { type: 'info', message: 'everything is ok' }
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# end
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# end
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# @yieldparam resource [FHIR::Model] the resource being validated
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# @yieldparam profile_url [String] the profile the resource is being
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# validated against
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# @yieldreturn [Array<Hash<Symbol, String>>,Hash<Symbol, String>] The
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# block should return a Hash or an Array of Hashes if any validation
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# messages should be added. The Hash must contain two keys: `:type`
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# and `:message`. `:type` can have a value of `'info'`, `'warning'`,
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# or `'error'`. A type of `'error'` means the resource is invalid.
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86
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# `:message` contains the message string itself.
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87
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def perform_additional_validation(&block)
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88
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additional_validations << block
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89
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+
end
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90
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+
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# @private
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92
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def additional_validation_messages(resource, profile_url)
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93
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additional_validations
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94
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.flat_map { |step| step.call(resource, profile_url) }
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95
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.select { |message| message.is_a? Hash }
|
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96
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+
end
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# Filter out unwanted validation messages
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#
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# @example
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# validator do
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# exclude_message { |message| message.type == 'info' }
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# end
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# @yieldparam message [Inferno::Entities::Message]
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def exclude_message(&block)
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@exclude_message = block if block_given?
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@exclude_message
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end
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# @see Inferno::DSL::FHIRValidation#resource_is_valid?
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def resource_is_valid?(resource, profile_url, runnable)
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112
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profile_url ||= FHIR::Definitions.resource_definition(resource.resourceType).url
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113
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@@ -40,6 +115,8 @@ module Inferno
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115
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message_hashes = outcome.issue&.map { |issue| message_hash_from_issue(issue) } || []
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message_hashes.concat(additional_validation_messages(resource, profile_url))
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+
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filter_messages(message_hashes)
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message_hashes
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@@ -47,10 +124,12 @@ module Inferno
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47
124
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.none? { |message_hash| message_hash[:type] == 'error' }
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48
125
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end
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127
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+
# @private
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50
128
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def filter_messages(message_hashes)
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51
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message_hashes.reject! { |message| exclude_message.call(Entities::Message.new(message)) } if exclude_message
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52
130
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end
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53
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132
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+
# @private
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54
133
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def message_hash_from_issue(issue)
|
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55
134
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{
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56
135
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type: issue_severity(issue),
|
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@@ -58,6 +137,7 @@ module Inferno
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58
137
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}
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59
138
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end
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60
139
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140
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+
# @private
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61
141
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def issue_severity(issue)
|
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62
142
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case issue.severity
|
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63
143
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when 'warning'
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@@ -69,6 +149,7 @@ module Inferno
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69
149
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end
|
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70
150
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end
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71
151
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152
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+
# @private
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72
153
|
def issue_message(issue)
|
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73
154
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location = if issue.respond_to?(:expression)
|
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74
155
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issue.expression&.join(', ')
|
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@@ -79,6 +160,11 @@ module Inferno
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79
160
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"#{location}: #{issue&.details&.text}"
|
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80
161
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end
|
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81
162
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163
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+
# Post a resource to the validation service for validating.
|
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164
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+
#
|
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165
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+
# @param resource [FHIR::Model]
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166
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+
# @param profile_url [String]
|
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167
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+
# @return [String] the body of the validation response
|
|
82
168
|
def validate(resource, profile_url)
|
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83
169
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RestClient.post(
|
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84
170
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"#{url}/validate",
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@@ -94,10 +180,28 @@ module Inferno
|
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94
180
|
@fhir_validators ||= {}
|
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95
181
|
end
|
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96
182
|
|
|
183
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+
# Define a validator
|
|
184
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+
# @example
|
|
185
|
+
# validator do
|
|
186
|
+
# url 'http://example.com/validator'
|
|
187
|
+
# exclude_message { |message| message.type == 'info' }
|
|
188
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+
# perform_additional_validation do |resource, profile_url|
|
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189
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+
# if something_is_wrong
|
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190
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+
# { type: 'error', message: 'something is wrong' }
|
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191
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+
# else
|
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192
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# { type: 'info', message: 'everything is ok' }
|
|
193
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+
# end
|
|
194
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+
# end
|
|
195
|
+
# end
|
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196
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+
#
|
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197
|
+
# @param name [Symbol] the name of the validator, only needed if you are
|
|
198
|
+
# using multiple validators
|
|
97
199
|
def validator(name = :default, &block)
|
|
98
200
|
fhir_validators[name] = Inferno::DSL::FHIRValidation::Validator.new(&block)
|
|
99
201
|
end
|
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100
202
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203
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+
# Find a particular validator. Looks through a runnable's parents up to
|
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204
|
+
# the suite to find a validator with a particular name
|
|
101
205
|
def find_validator(validator_name)
|
|
102
206
|
validator = fhir_validators[validator_name] || parent&.find_validator(validator_name)
|
|
103
207
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@@ -1 +1 @@
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1
|
-
(self.webpackChunkinferno_web_app=self.webpackChunkinferno_web_app||[]).push([[217],{3217:(t,e,n)=>{
|
|
1
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+
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