inferno_core 0.0.5 → 0.0.8.pre2

data/lib/inferno/dsl/runnable.rb

@@ -1,4 +1,6 @@
+require_relative 'configurable'
 require_relative 'resume_test_route'
+require_relative '../utils/markdown_formatter'
 
 module Inferno
   module DSL
@@ -7,14 +9,17 @@ module Inferno
     module Runnable
       attr_accessor :parent
 
+      include Inferno::Utils::MarkdownFormatter
+
       # When a class (e.g. TestSuite/TestGroup) uses this module, set it up
       # so that subclassing it works correctly.
       # - add the subclass to the relevant repository when it is created
       # - copy the class instance variables from the superclass
       # - add a hook to the subclass so that its subclasses do the same
-      # @api private
+      # @private
       def self.extended(extending_class)
         super
+        extending_class.extend Configurable
 
         extending_class.define_singleton_method(:inherited) do |subclass|
           copy_instance_variables(subclass)
@@ -36,14 +41,16 @@ module Inferno
       # classes. When inheriting from a Runnable class, these class instance
       # variables need to be copied. Any child Runnable classes will themselves
       # need to be subclassed so that their parent can be updated.
-      # @api private
+      # @private
       def copy_instance_variables(subclass)
         instance_variables.each do |variable|
-          next if [:@id, :@groups, :@tests, :@parent, :@children, :@test_count].include?(variable)
+          next if [:@id, :@groups, :@tests, :@parent, :@children, :@test_count, :@config].include?(variable)
 
           subclass.instance_variable_set(variable, instance_variable_get(variable).dup)
         end
 
+        subclass.config(config)
+
         child_types.each do |child_type|
           new_children = send(child_type).map do |child|
             Class.new(child).tap do |subclass_child|
@@ -56,12 +63,13 @@ module Inferno
         end
       end
 
-      # @api private
+      # @private
       def add_self_to_repository
         repository.insert(self)
       end
 
       # An instance of the repository for the class using this module
+      # @private
       def repository
         nil
       end
@@ -69,7 +77,7 @@ module Inferno
       # This method defines a child entity. Classes using this module should
       # alias the method name they wish to use to define child entities to this
       # method.
-      # @api private
+      # @private
       def define_child(*args, &block)
         hash_args = process_args(args)
 
@@ -89,7 +97,7 @@ module Inferno
         klass
       end
 
-      # @api private
+      # @private
       def process_args(args)
         hash_args =
           if args[0].is_a? Hash
@@ -105,13 +113,13 @@ module Inferno
         hash_args
       end
 
-      # @api private
+      # @private
       def child_metadata(metadata = nil)
         @child_metadata = metadata if metadata
         @child_metadata
       end
 
-      # @api private
+      # @private
       def create_child_class(hash_args)
         superclass_id = hash_args.delete :from
 
@@ -124,18 +132,18 @@ module Inferno
         Class.new(superclass)
       end
 
-      # @api private
+      # @private
       def configure_child_class(klass, hash_args) # rubocop:disable Metrics/CyclomaticComplexity
-        inputs.each do |input_definition|
-          next if klass.inputs.any? { |input| input[:name] == input_definition[:name] }
+        inputs.each do |name|
+          next if klass.inputs.any? { |klass_input_name| klass_input_name == name }
 
-          klass.input input_definition[:name], input_definition
+          klass.input name
         end
 
-        outputs.each do |output_definition|
-          next if klass.outputs.include? output_definition
+        outputs.each do |output_name|
+          next if klass.outputs.include? output_name
 
-          klass.output output_definition
+          klass.output output_name
         end
 
         new_fhir_client_definitions = klass.instance_variable_get(:@fhir_client_definitions) || {}
@@ -154,8 +162,14 @@ module Inferno
         end
         klass.instance_variable_set(:@http_client_definitions, new_http_client_definitions)
 
+        klass.config(config)
+
         hash_args.each do |key, value|
-          klass.send(key, *value)
+          if value.is_a? Array
+            klass.send(key, *value)
+          else
+            klass.send(key, value)
+          end
         end
 
         klass.children.each do |child_class|
@@ -164,11 +178,15 @@ module Inferno
         end
       end
 
-      # @api private
+      # @private
       def handle_child_definition_block(klass, &block)
         klass.class_eval(&block) if block_given?
       end
 
+      # Set/Get a runnable's id
+      #
+      # @param new_id [String,Symbol]
+      # @return [String,Symbol] the id
       def id(new_id = nil)
         return @id if new_id.nil? && @id.present?
 
@@ -184,70 +202,93 @@ module Inferno
         @id = "#{prefix}#{@base_id}"
       end
 
+      # Set/Get a runnable's title
+      #
+      # @param new_title [String]
+      # @return [String] the title
       def title(new_title = nil)
         return @title if new_title.nil?
 
         @title = new_title
       end
 
+      # Set/Get a runnable's description
+      #
+      # @param new_description [String]
+      # @return [String] the description
       def description(new_description = nil)
         return @description if new_description.nil?
 
-        @description = new_description
+        @description = format_markdown(new_description)
       end
 
       # Define inputs
       #
-      # @param name [Symbol] name of the input
-      # @param other_names [Symbol] array of symbols if specifying multiple inputs
+      # @param identifier [Symbol] identifier for the input
+      # @param other_identifiers [Symbol] array of symbols if specifying multiple inputs
       # @param input_definition [Hash] options for input such as type, description, or title
       # @option input_definition [String] :title Human readable title for input
       # @option input_definition [String] :description Description for the input
       # @option input_definition [String] :type text | textarea
       # @option input_definition [String] :default The default value for the input
+      # @option input_definition [Boolean] :optional Set to true to not require input for test execution
       # @return [void]
       # @example
       #   input :patientid, title: 'Patient ID', description: 'The ID of the patient being searched for',
       #                     default: 'default_patient_id'
       # @example
-      #   input :textarea, title: 'Textarea Input Example', type: 'textarea'
-      def input(name, *other_names, **input_definition)
-        if other_names.present?
-          [name, *other_names].each do |input_name|
-            inputs.push({ name: input_name, title: nil, description: nil, type: 'text' })
+      #   input :textarea, title: 'Textarea Input Example', type: 'textarea', optional: true
+      def input(identifier, *other_identifiers, **input_definition)
+        if other_identifiers.present?
+          [identifier, *other_identifiers].compact.each do |input_identifier|
+            inputs << input_identifier
+            config.add_input(input_identifier)
           end
         else
-          input_definition[:type] = 'text' unless input_definition.key? :type
-          inputs.push({ name: name }.merge(input_definition))
+          inputs << identifier
+          config.add_input(identifier, input_definition)
         end
       end
 
       # Define outputs
       #
-      # @param output_definitions [Symbol]
+      # @param output_list [Symbol]
       # @return [void]
       # @example
       #   output :patient_id, :bearer_token
-      def output(*output_definitions)
-        outputs.concat(output_definitions)
+      def output(*output_list)
+        output_list.each do |output_identifier|
+          outputs << output_identifier
+          config.add_output(output_identifier)
+        end
       end
 
-      # @api private
+      # @private
       def default_id
         to_s
       end
 
-      # @api private
+      # @private
       def inputs
         @inputs ||= []
       end
 
-      # @api private
+      # @private
+      def input_definitions
+        config.inputs.slice(*inputs)
+      end
+
+      # @private
+      def output_definitions
+        config.outputs.slice(*outputs)
+      end
+
+      # @private
       def outputs
         @outputs ||= []
       end
 
-      # @api private
+      # @private
       def child_types
         return [] if ancestors.include? Inferno::Entities::Test
         return [:groups] if ancestors.include? Inferno::Entities::TestSuite
@@ -255,7 +296,7 @@ module Inferno
         [:groups, :tests]
       end
 
-      # @api private
+      # @private
       def children
         @children ||= []
       end
@@ -266,7 +307,7 @@ module Inferno
         @validator_url = url
       end
 
-      # @api private
+      # @private
       def suite
         return self if ancestors.include? Inferno::Entities::TestSuite
 
@@ -303,8 +344,8 @@ module Inferno
       # @yield This method takes a block which must return the identifier
       #   defined when a test was set to wait for the test run that hit this
       #   route. The block has access to the `request` method which returns a
-      #   {Inferno::DSL::Request} object with the information for the incoming
-      #   request.
+      #   {Inferno::Entities::Request} object with the information for the
+      #   incoming request.
       def resume_test_route(method, path, &block)
         route_class = Class.new(ResumeTestRoute) do
           define_method(:test_run_identifier, &block)
@@ -331,9 +372,34 @@ module Inferno
         Inferno.routes << { method: method, path: path, handler: handler, suite: suite }
       end
 
+      # @private
       def test_count
         @test_count ||= children&.reduce(0) { |sum, child| sum + child.test_count } || 0
       end
+
+      # @private
+      def required_inputs(prior_outputs = [])
+        required_inputs = inputs.select do |input|
+          !input_definitions[input][:optional] && !prior_outputs.include?(input)
+        end
+        required_inputs.map! { |input_identifier| input_definitions[input_identifier][:name] }
+        children_required_inputs = children.flat_map { |child| child.required_inputs(prior_outputs) }
+        prior_outputs.concat(outputs)
+        (required_inputs + children_required_inputs).flatten.uniq
+      end
+
+      # @private
+      def missing_inputs(submitted_inputs)
+        submitted_inputs = [] if submitted_inputs.nil?
+
+        required_inputs.map(&:to_s) - submitted_inputs.map { |input| input[:name] }
+      end
+
+      def user_runnable?
+        @user_runnable ||= parent.nil? ||
+                           !parent.respond_to?(:run_as_group?) ||
+                           (parent.user_runnable? && !parent.run_as_group?)
+      end
     end
   end
 end

data/lib/inferno/entities/header.rb

@@ -2,13 +2,20 @@ module Inferno
   module Entities
     # A `Header` represents an HTTP request/response header
     #
-    # @attr_accessor [String] id of the header
-    # @attr_accessor [String] request_id index of the HTTP request
-    # @attr_accessor [String] name header name
-    # @attr_accessor [String] value header value
-    # @attr_accessor [String] type request/response
-    # @attr_accessor [Time] created_at
-    # @attr_accessor [Time] updated_at
+    # @!attribute id
+    #   @return [String] id of the header
+    # @!attribute request_id
+    #   @return [String] index of the HTTP request
+    # @!attribute name
+    #   @return [String] header name
+    # @!attribute value
+    #   @return [String] header value
+    # @!attribute type
+    #   @return [String] request/response
+    # @!attribute created_at
+    #   @return [Time]
+    # @!attribute updated_at
+    #   @return [Time]
     class Header < Entity
       ATTRIBUTES = [:id, :request_id, :name, :type, :value, :created_at, :updated_at].freeze
 

data/lib/inferno/entities/message.rb

@@ -2,14 +2,22 @@ module Inferno
   module Entities
     # A `Message` represents a message generated during a test.
     #
-    # @attr_accessor [String] id of the message
-    # @attr_accessor [String] index of the message. Used for ordering.
-    # @attr_accessor [String] result_id
-    # @attr_accessor [Inferno::Entities::Result] result
-    # @attr_accessor [String] type
-    # @attr_accessor [String] message
-    # @attr_accessor [Time] created_at
-    # @attr_accessor [Time] updated_at
+    # @!attribute id
+    #   @return [String] id of the message
+    # @!attribute index
+    #   @return [String] index of the message. Used for ordering.
+    # @!attribute result_id
+    #   @return [String]
+    # @!attribute result
+    #   @return [Inferno::Entities::Result]
+    # @!attribute type
+    #   @return [String]
+    # @!attribute message
+    #   @return [String]
+    # @!attribute created_at
+    #   @return [Time]
+    # @!attribute updated_at
+    #   @return [Time]
     class Message < Entity
       ATTRIBUTES = [:id, :index, :message, :result_id, :result, :type, :created_at, :updated_at].freeze
       TYPES = ['error', 'warning', 'info'].freeze

data/lib/inferno/entities/request.rb

@@ -2,21 +2,34 @@ module Inferno
   module Entities
     # A `Request` represents a request and response issued during a test.
     #
-    # @attr_accessor [String] id of the request
-    # @attr_accessor [String] index of the request. Used for ordering.
-    # @attr_accessor [String] verb http verb
-    # @attr_accessor [String] url request url
-    # @attr_accessor [String] direction incoming/outgoing
-    # @attr_accessor [String] name name for the request
-    # @attr_accessor [String] status http response status code
-    # @attr_accessor [String] request_body body of the http request
-    # @attr_accessor [String] response_body body of the http response
-    # @attr_accessor [Array<Inferno::Entities::Header>] headers http
-    #   request/response headers
-    # @attr_accessor [String] result_id id of the result for this request
-    # @attr_accessor [String] test_session_id id of the test session for this request
-    # @attr_accessor [Time] created_at creation timestamp
-    # @attr_accessor [Time] updated_at update timestamp
+    # @!attribute id
+    #   @return [String] id of the request
+    # @!attribute index
+    #   @return [String] index of the request. Used for ordering.
+    # @!attribute verb
+    #   @return [String] http verb
+    # @!attribute url
+    #   @return [String] request url
+    # @!attribute direction
+    #   @return [String] incoming/outgoing
+    # @!attribute name
+    #   @return [String] name for the request
+    # @!attribute status
+    #   @return [String] http response status code
+    # @!attribute request_body
+    #   @return [String] body of the http request
+    # @!attribute response_body
+    #   @return [String] body of the http response
+    # @!attribute headers
+    #   @return [Array<Inferno::Entities::Header>] http request/response headers
+    # @!attribute result_id
+    #   @return [String] id of the result for this request
+    # @!attribute test_session_id
+    #   @return [String] id of the test session for this request
+    # @!attribute created_at
+    #   @return [Time] creation timestamp
+    # @!attribute updated_at
+    #   @return [Time] update timestamp
     class Request < Entity
       ATTRIBUTES = [
         :id, :index, :verb, :url, :direction, :name, :status,
@@ -46,7 +59,7 @@ module Inferno
       # @param name [String] the header name
       # @return [Inferno::Entities::RequestHeader, nil]
       def response_header(name)
-        response_headers.find { |header| header.name == name.downcase }
+        response_headers.find { |header| header.name.casecmp(name).zero? }
       end
 
       # Find a request header
@@ -54,7 +67,7 @@ module Inferno
       # @param name [String] the header name
       # @return [Inferno::Entities::RequestHeader, nil]
       def request_header(name)
-        request_headers.find { |header| header.name == name.downcase }
+        request_headers.find { |header| header.name.casecmp(name).zero? }
       end
 
       # All of the request headers
@@ -94,7 +107,7 @@ module Inferno
         }
       end
 
-      # @api private
+      # @private
       def to_hash
         {
           id: id,
@@ -122,7 +135,7 @@ module Inferno
       end
 
       class << self
-        # @api private
+        # @private
         def from_rack_env(env, name: nil)
           rack_request = env['router.request'].rack_request
           url = "#{rack_request.base_url}#{rack_request.path}"
@@ -143,7 +156,7 @@ module Inferno
           )
         end
 
-        # @api private
+        # @private
         def from_http_response(response, test_session_id:, direction: 'outgoing', name: nil)
           request_headers =
             response.env.request_headers
@@ -165,7 +178,7 @@ module Inferno
           )
         end
 
-        # @api private
+        # @private
         def from_fhir_client_reply(reply, test_session_id:, direction: 'outgoing', name: nil)
           request = reply.request
           response = reply.response

data/lib/inferno/entities/result.rb

@@ -3,36 +3,43 @@ module Inferno
     # A `Result` represents the result of running a `Test`, `TestGroup`,
     # or `TestSuite`
     #
-    # @attr_accessor [String] id id of the session
-    # @attr_accessor [Time] created_at creation timestamp
-    # @attr_accessor [Time] updated_at update timestamp
-    # @attr_accessor [String] reference_type type of entity this result belongs
-    #   to (`Test`, `TestGroup`, or `TestSuite`)
-    # @attr_accessor [String, nil] test_id id of the `Test` this result belongs
-    #   to
-    # @attr_accessor [Test, nil] test the `Test` this result belongs to
-    # @attr_accessor [String, nil] test_group_id id of the `TestGroup` this
-    #   result belongs to
-    # @attr_accessor [TestGroup, nil] test_group the `TestGroup` this result
-    #   belongs to
-    # @attr_accessor [String, nil] test_suite_id id of the `TestSuite` this
-    #   result belongs to
-    # @attr_accessor [TestSuite, nil] test_suite the `TestSuite` this result
-    #   belongs to
-    # @attr_accessor [String] result the result (`pass`, `fail`, `skip`, `omit`,
-    #   `error`, `running`, `wait`, `cancel`)
-    # @attr_accessor [String] result_message summary message for this result
-    # @attr_accessor [String] test_run_id the `TestRun` this result belongs to
-    # @attr_accessor [String] test_session_id the `TestSession` this result
-    #   belongs to
-    # @attr_accessor [Array<Inferno::Entities::Message>] messages additional
-    #   messages for this result
-    # @attr_accessor [Array<Inferno::Entities::Request>] request_summaries
-    #   summaries of the requests associated with this result
-    # @attr_accessor [String] input_json JSON string of the inputs used for this
+    # @!attribute id
+    #   @return [String] id of the session
+    # @!attribute created_at
+    #   @return [Time] creation timestamp
+    # @!attribute updated_at
+    #   @return [Time] update timestamp
+    # @!attribute test_id
+    #   @return [String, nil] id of the `Test` this result belongs to
+    # @!attribute test
+    #   @return [Test, nil] the `Test` this result belongs to
+    # @!attribute test_group_id
+    #   @return [String, nil] id of the `TestGroup` this result belongs to
+    # @!attribute test_group
+    #   @return [TestGroup, nil] the `TestGroup` this result belongs to
+    # @!attribute test_suite_id
+    #   @return [String, nil] id of the `TestSuite` this result belongs to
+    # @!attribute test_suite
+    #   @return [TestSuite, nil] the `TestSuite` this result belongs to
+    # @!attribute result
+    #   @return [String] the result (`pass`, `fail`, `skip`, `omit`, `error`,
+    #   `running`, `wait`, `cancel`)
+    # @!attribute result_message
+    #   @return [String] summary message for this result
+    # @!attribute test_run_id
+    #   @return [String] the `TestRun` this result belongs to
+    # @!attribute test_session_id
+    #   @return [String] the `TestSession` this result belongs to
+    # @!attribute messages
+    #   @return [Array<Inferno::Entities::Message>] additional messages for this
     #   result
-    # @attr_accessor [String] output_json JSON string of the outputs created by
-    #   this result
+    # @!attribute requests
+    #   @return [Array<Inferno::Entities::Request>] summaries of the requests
+    #   associated with this result
+    # @!attribute input_json
+    #   @return [String] JSON string of the inputs used for this result
+    # @!attribute output_json
+    #   @return [String] JSON string of the outputs created by this result
     class Result < Entity
       ATTRIBUTES = [
         :id, :created_at, :updated_at, :test_id, :test, :test_group_id,

data/lib/inferno/entities/session_data.rb

@@ -3,12 +3,18 @@ module Inferno
     # `SessionData` represents a piece of saved state for a `TestSession`.
     # These are used to store test inputs and outputs.
     #
-    # @attr_accessor [String] id of the test input
-    # @attr_accessor [String] name
-    # @attr_accessor [String] value
-    # @attr_accessor [String] test_session_id
-    # @attr_accessor [Time] created_at
-    # @attr_accessor [Time] updated_at
+    # @!attribute id
+    #   @return [String] id of the test input
+    # @!attribute name
+    #   @return [String]
+    # @!attribute value
+    #   @return [String]
+    # @!attribute test_session_id
+    #   @return [String]
+    # @!attribute created_at
+    #   @return [Time]
+    # @!attribute updated_at
+    #   @return [Time]
     class SessionData < Entity
       ATTRIBUTES = [:id, :name, :value, :test_session_id, :created_at, :updated_at].freeze