inferno_core 0.0.4 → 0.0.8.pre

data/lib/inferno/public/bundle.js.LICENSE.txt

@@ -19,6 +19,12 @@ object-assign
  * @license MIT
  */
 
+/** @license MUI v5.2.0
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
 /** @license React v0.20.2
  * scheduler.production.min.js
  *
@@ -55,6 +61,15 @@ object-assign
  * LICENSE file in the root directory of this source tree.
  */
 
+/** @license React v17.0.2
+ * react-jsx-runtime.production.min.js
+ *
+ * Copyright (c) Facebook, Inc. and its affiliates.
+ *
+ * This source code is licensed under the MIT license found in the
+ * LICENSE file in the root directory of this source tree.
+ */
+
 /** @license React v17.0.2
  * react.production.min.js
  *

data/lib/inferno/repositories/in_memory_repository.rb

@@ -24,7 +24,7 @@ module Inferno
           @all ||= []
         end
 
-        # @api private
+        # @private
         def all_by_id
           @all_by_id ||= {}
           @all_by_id.length == all.length ? @all_by_id : index_by_id

data/lib/inferno/repositories/results.rb

@@ -31,7 +31,7 @@ module Inferno
       end
 
       # Get the current result for a particular test/group
-      # @api private
+      # @private
       # @example
       #   repo.current_result_for_test_session(
       #     test_session_id,

data/lib/inferno/repositories/test_runs.rb

@@ -13,6 +13,14 @@ module Inferno
         }
       end
 
+      def build_entity(params)
+        super.tap do |test_run|
+          test_run&.results&.map! do |result|
+            result.is_a?(Entities::Result) ? result : Entities::Result.new(result)
+          end
+        end
+      end
+
       def results_for_test_run(test_run_id)
         test_run_hash =
           self.class::Model
@@ -107,6 +115,13 @@ module Inferno
           super
         end
       end
+
+      def active_test_run_for_session?(test_session_id)
+        self.class::Model
+          .where(test_session_id: test_session_id)
+          .exclude(status: 'done')
+          .count.positive?
+      end
     end
   end
 end

data/lib/inferno/spec_support.rb

@@ -1,5 +1,5 @@
 module Inferno
-  # @api private
+  # @private
   # This module provides constants so that unit tests in suite repositories can
   # load the factories defined in inferno.
   module SpecSupport

data/lib/inferno/test_runner.rb

@@ -1,6 +1,9 @@
+require_relative './utils/markdown_formatter'
+
 module Inferno
-  # @api private
+  # @private
   class TestRunner
+    include Inferno::Utils::MarkdownFormatter
     attr_reader :test_session, :test_run, :resuming
 
     def initialize(test_session:, test_run:, resume: false)
@@ -35,13 +38,13 @@ module Inferno
       run_results.values
     end
 
-    def run(runnable)
+    def run(runnable, scratch = {})
       if runnable < Entities::Test
-        return existing_test_result(runnable) || run_test(runnable) if resuming
+        return existing_test_result(runnable) || run_test(runnable, scratch) if resuming
 
-        run_test(runnable)
+        run_test(runnable, scratch)
       else
-        run_group(runnable)
+        run_group(runnable, scratch)
       end
     end
 
@@ -49,22 +52,22 @@ module Inferno
       results_repo.result_for_test_run(runnable.reference_hash.merge(test_run_id: test_run.id))
     end
 
-    def run_test(test)
+    def run_test(test, scratch)
       inputs = load_inputs(test)
 
       input_json_string = JSON.generate(inputs)
-      test_instance = test.new(inputs: inputs, test_session_id: test_session.id)
+      test_instance = test.new(inputs: inputs, test_session_id: test_session.id, scratch: scratch)
 
       result = begin
         test_instance.load_named_requests
         test_instance.instance_eval(&test.block)
         'pass'
       rescue Exceptions::TestResultException => e
-        test_instance.result_message = e.message
+        test_instance.result_message = format_markdown(e.message)
         e.result
       rescue StandardError => e
         Application['logger'].error(e.full_message)
-        test_instance.result_message = "Error: #{e.message}"
+        test_instance.result_message = format_markdown("Error: #{e.message}\n\n#{e.backtrace.first}")
         'error'
       end
 
@@ -95,10 +98,10 @@ module Inferno
       test_result
     end
 
-    def run_group(group)
+    def run_group(group, scratch)
       results = []
       group.children.each do |child|
-        result = run(child)
+        result = run(child, scratch)
         results << result
         break if results.last.waiting?
       end
@@ -132,26 +135,25 @@ module Inferno
     end
 
     def load_inputs(runnable)
-      runnable.inputs.each_with_object({}) do |input, input_hash|
-        name = input[:name]
-        input_hash[name] = session_data_repo.load(test_session_id: test_session.id, name: name)
+      runnable.inputs.each_with_object({}) do |input_identifier, input_hash|
+        input_alias = runnable.config.input_name(input_identifier)
+        input_hash[input_identifier] = session_data_repo.load(test_session_id: test_session.id, name: input_alias)
       end
     end
 
     def save_outputs(runnable_instance)
       outputs =
-        runnable_instance.outputs.map do |output_name|
+        runnable_instance.outputs_to_persist.map do |output_identifier, value|
           {
-            name: output_name,
-            value: runnable_instance.send(output_name)
+            name: runnable_instance.class.config.output_name(output_identifier),
+            value: value
           }
         end
+
       outputs.compact!
       outputs.each do |output|
         session_data_repo.save(output.merge(test_session_id: test_session.id))
       end
-
-      outputs
     end
 
     def persist_result(params)

data/lib/inferno/utils/markdown_formatter.rb

@@ -0,0 +1,15 @@
+module Inferno
+  module Utils
+    # @private
+    module MarkdownFormatter
+      def format_markdown(markdown) # rubocop:disable Metrics/CyclomaticComplexity
+        lines = markdown.lines
+
+        return markdown if lines.any? { |line| line.match?(/^\S/) }
+
+        natural_indent = lines.collect { |l| l.index(/[^ ]/) }.select { |l| !l.nil? && l.positive? }.min || 0
+        markdown.lines.map { |l| l[natural_indent..] || "\n" }.join
+      end
+    end
+  end
+end

data/lib/inferno/utils/middleware/request_logger.rb

@@ -1,6 +1,6 @@
 module Inferno
   module Utils
-    # @api private
+    # @private
     module Middleware
       class RequestLogger
         attr_reader :app
@@ -9,6 +9,10 @@ module Inferno
           @app = app
         end
 
+        def verbose_logging?
+          @verbose_logging ||= ENV['VERBOSE_REQUEST_LOGGING']&.downcase == true
+        end
+
         def logger
           @logger ||= Application['logger']
         end
@@ -35,7 +39,9 @@ module Inferno
           logger.info("#{status} in #{elapsed.in_milliseconds} ms")
           return unless body.present?
 
-          if body.length > 100
+          body = body.is_a?(Array) ? body.join : body
+
+          if body.length > 100 && !verbose_logging?
             logger.info("#{body[0..100]}...")
           else
             logger.info(body)
@@ -56,7 +62,7 @@ module Inferno
 
           return unless body.present?
 
-          if body.length > 100
+          if body.length > 100 && !verbose_logging?
             logger.info("#{body[0..100]}...")
           else
             logger.info(body)

data/lib/inferno/utils/migration.rb

@@ -0,0 +1,17 @@
+module Inferno
+  module Utils
+    class Migration
+      def run
+        db = Inferno::Application['db.connection']
+        migration_path = File.join(Inferno::Application.root, 'lib', 'inferno', 'db', 'migrations')
+        Sequel::Migrator.run(db, migration_path)
+
+        if ENV['APP_ENV'] == 'development' # rubocop:disable Style/GuardClause
+          schema_path = File.join(Inferno::Application.root, 'lib', 'inferno', 'db', 'schema.rb')
+          db.extension :schema_dumper
+          File.open(schema_path, 'w') { |f| f.print(db.dump_schema_migration) }
+        end
+      end
+    end
+  end
+end

data/lib/inferno/version.rb

@@ -1,3 +1,3 @@
 module Inferno
-  VERSION = '0.0.4'.freeze
+  VERSION = '0.0.8.pre'.freeze
 end

data/lib/inferno.rb

@@ -1,7 +1,3 @@
-require 'active_support/all'
-require 'dotenv'
-require 'dry/system/container'
-require 'sequel'
 require_relative 'inferno/config/application'
 require_relative 'inferno/dsl'
 require_relative 'inferno/entities'

data/spec/factories/request.rb

@@ -12,6 +12,20 @@ FactoryBot.define do
     name { nil }
     status { 200 }
     direction { 'outgoing' }
+    headers do
+      [
+        {
+          type: 'request',
+          name: 'Request-Header',
+          value: 'REQUEST HEADER VALUE'
+        },
+        {
+          type: 'response',
+          name: 'Response-Header',
+          value: 'RESPONSE HEADER VALUE'
+        }
+      ]
+    end
 
     request_body { nil }
 
@@ -24,12 +38,5 @@ FactoryBot.define do
     to_create do |instance|
       Inferno::Repositories::Requests.new.create(instance.to_hash)
     end
-
-    after(:create) do |instance, evaluator|
-      instance.instance_variable_set(
-        :@headers,
-        repo_create_list(:header, evaluator.header_count, request_id: instance.index)
-      )
-    end
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: inferno_core
 version: !ruby/object:Gem::Version
-  version: 0.0.4
+  version: 0.0.8.pre
 platform: ruby
 authors:
 - Stephen MacVicar
@@ -10,7 +10,7 @@ authors:
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2021-08-10 00:00:00.000000000 Z
+date: 2021-12-08 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: activesupport
@@ -54,6 +54,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '2.7'
+- !ruby/object:Gem::Dependency
+  name: dry-configurable
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 0.12.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '='
+      - !ruby/object:Gem::Version
+        version: 0.12.0
 - !ruby/object:Gem::Dependency
   name: dry-system
   requirement: !ruby/object:Gem::Requirement
@@ -88,14 +102,14 @@ dependencies:
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.0'
+        version: '5.0'
   type: :runtime
   prerelease: false
   version_requirements: !ruby/object:Gem::Requirement
     requirements:
     - - "~>"
       - !ruby/object:Gem::Version
-        version: '4.0'
+        version: '5.0'
 - !ruby/object:Gem::Dependency
   name: fhir_models
   requirement: !ruby/object:Gem::Requirement
@@ -222,6 +236,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '5.42'
+- !ruby/object:Gem::Dependency
+  name: sidekiq
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.2.1
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 6.2.1
 - !ruby/object:Gem::Dependency
   name: sqlite3
   requirement: !ruby/object:Gem::Requirement
@@ -236,6 +264,20 @@ dependencies:
     - - "~>"
       - !ruby/object:Gem::Version
         version: '1.4'
+- !ruby/object:Gem::Dependency
+  name: thor
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.1.0
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - "~>"
+      - !ruby/object:Gem::Version
+        version: 1.1.0
 - !ruby/object:Gem::Dependency
   name: codecov
   requirement: !ruby/object:Gem::Requirement
@@ -409,13 +451,17 @@ description: Inferno Core is an open source tool for testing data exchanges enab
 email:
 - inferno@groups.mitre.org
 executables:
-- inferno-console
+- inferno
 extensions: []
 extra_rdoc_files: []
 files:
 - LICENSE
-- bin/inferno-console
+- bin/inferno
 - lib/inferno.rb
+- lib/inferno/apps/cli.rb
+- lib/inferno/apps/cli/console.rb
+- lib/inferno/apps/cli/main.rb
+- lib/inferno/apps/cli/migration.rb
 - lib/inferno/apps/web/application.rb
 - lib/inferno/apps/web/controllers/controller.rb
 - lib/inferno/apps/web/controllers/requests/show.rb
@@ -431,6 +477,7 @@ files:
 - lib/inferno/apps/web/controllers/test_suites/show.rb
 - lib/inferno/apps/web/index.html.erb
 - lib/inferno/apps/web/router.rb
+- lib/inferno/apps/web/serializers/hash_value_extractor.rb
 - lib/inferno/apps/web/serializers/header.rb
 - lib/inferno/apps/web/serializers/input.rb
 - lib/inferno/apps/web/serializers/message.rb
@@ -458,6 +505,7 @@ files:
 - lib/inferno/db/schema.rb
 - lib/inferno/dsl.rb
 - lib/inferno/dsl/assertions.rb
+- lib/inferno/dsl/configurable.rb
 - lib/inferno/dsl/fhir_client.rb
 - lib/inferno/dsl/fhir_client_builder.rb
 - lib/inferno/dsl/fhir_validation.rb
@@ -508,7 +556,9 @@ files:
 - lib/inferno/repositories/validate_runnable_reference.rb
 - lib/inferno/spec_support.rb
 - lib/inferno/test_runner.rb
+- lib/inferno/utils/markdown_formatter.rb
 - lib/inferno/utils/middleware/request_logger.rb
+- lib/inferno/utils/migration.rb
 - lib/inferno/version.rb
 - spec/factories/header.rb
 - spec/factories/message.rb
@@ -538,9 +588,9 @@ required_ruby_version: !ruby/object:Gem::Requirement
       version: 2.7.0
 required_rubygems_version: !ruby/object:Gem::Requirement
   requirements:
-  - - ">="
+  - - ">"
     - !ruby/object:Gem::Version
-      version: '0'
+      version: 1.3.1
 requirements: []
 rubygems_version: 3.1.6
 signing_key:

data/bin/inferno-console

@@ -1,8 +0,0 @@
-#!/usr/bin/env ruby
-
-require 'pry'
-require_relative '../lib/inferno'
-
-Inferno::Application.finalize!
-
-Pry.start