inferno_core 0.0.1 → 0.0.5

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Files changed (67) hide show
  1. checksums.yaml +4 -4
  2. data/lib/inferno.rb +4 -0
  3. data/lib/inferno/apps/web/controllers/test_runs/create.rb +17 -10
  4. data/lib/inferno/apps/web/controllers/test_runs/show.rb +10 -0
  5. data/lib/inferno/apps/web/controllers/test_sessions/create.rb +1 -0
  6. data/lib/inferno/apps/web/controllers/test_sessions/last_test_run.rb +22 -0
  7. data/lib/inferno/apps/web/controllers/test_sessions/results/index.rb +6 -1
  8. data/lib/inferno/apps/web/controllers/test_sessions/session_data/index.rb +21 -0
  9. data/lib/inferno/apps/web/index.html.erb +44 -0
  10. data/lib/inferno/apps/web/router.rb +15 -0
  11. data/lib/inferno/apps/web/serializers/request.rb +1 -0
  12. data/lib/inferno/apps/web/serializers/result.rb +8 -0
  13. data/lib/inferno/apps/web/serializers/session_data.rb +10 -0
  14. data/lib/inferno/apps/web/serializers/test.rb +1 -3
  15. data/lib/inferno/apps/web/serializers/test_group.rb +2 -3
  16. data/lib/inferno/apps/web/serializers/test_run.rb +1 -0
  17. data/lib/inferno/apps/web/serializers/test_session.rb +1 -1
  18. data/lib/inferno/apps/web/serializers/test_suite.rb +1 -0
  19. data/lib/inferno/config/application.rb +4 -2
  20. data/lib/inferno/config/boot.rb +2 -0
  21. data/lib/inferno/config/boot/db.rb +10 -1
  22. data/lib/inferno/config/boot/sidekiq.rb +11 -0
  23. data/lib/inferno/db/migrations/001_create_initial_structure.rb +0 -21
  24. data/lib/inferno/db/migrations/002_add_wait_support.rb +7 -0
  25. data/lib/inferno/db/migrations/003_update_session_data.rb +18 -0
  26. data/lib/inferno/db/migrations/004_add_request_results_table.rb +9 -0
  27. data/lib/inferno/db/migrations/005_add_updated_at_index_to_results.rb +5 -0
  28. data/lib/inferno/db/schema.rb +154 -0
  29. data/lib/inferno/dsl.rb +1 -3
  30. data/lib/inferno/dsl/fhir_client_builder.rb +16 -0
  31. data/lib/inferno/dsl/request_storage.rb +12 -0
  32. data/lib/inferno/dsl/results.rb +49 -0
  33. data/lib/inferno/dsl/resume_test_route.rb +89 -0
  34. data/lib/inferno/dsl/runnable.rb +96 -7
  35. data/lib/inferno/entities.rb +1 -1
  36. data/lib/inferno/entities/header.rb +7 -7
  37. data/lib/inferno/entities/message.rb +8 -6
  38. data/lib/inferno/entities/request.rb +40 -14
  39. data/lib/inferno/entities/result.rb +34 -18
  40. data/lib/inferno/entities/session_data.rb +33 -0
  41. data/lib/inferno/entities/test.rb +20 -7
  42. data/lib/inferno/entities/test_run.rb +13 -6
  43. data/lib/inferno/entities/test_session.rb +8 -8
  44. data/lib/inferno/exceptions.rb +12 -0
  45. data/lib/inferno/jobs.rb +16 -0
  46. data/lib/inferno/jobs/execute_test_run.rb +14 -0
  47. data/lib/inferno/jobs/resume_test_run.rb +14 -0
  48. data/lib/inferno/public/bundle.js +1 -1
  49. data/lib/inferno/repositories/repository.rb +13 -0
  50. data/lib/inferno/repositories/requests.rb +5 -4
  51. data/lib/inferno/repositories/results.rb +151 -3
  52. data/lib/inferno/repositories/session_data.rb +47 -0
  53. data/lib/inferno/repositories/test_runs.rb +66 -0
  54. data/lib/inferno/test_runner.rb +121 -29
  55. data/lib/inferno/utils/middleware/request_logger.rb +16 -3
  56. data/lib/inferno/version.rb +1 -1
  57. data/spec/factories/header.rb +19 -0
  58. data/spec/factories/message.rb +17 -0
  59. data/spec/factories/request.rb +35 -0
  60. data/spec/factories/result.rb +45 -0
  61. data/spec/factories/test_run.rb +24 -0
  62. data/spec/factories/test_session.rb +11 -0
  63. data/spec/fixtures/basic_test_group.rb +9 -0
  64. data/spec/fixtures/basic_test_suite.rb +8 -0
  65. metadata +139 -89
  66. data/lib/inferno/dsl/fhir_manipulation.rb +0 -25
  67. data/lib/inferno/entities/test_input.rb +0 -20
@@ -7,13 +7,13 @@ module Inferno
7
7
  request = self.class::Model.create(db_params(params))
8
8
 
9
9
  request_headers = (params[:request_headers] || []).map do |header|
10
- headers_repo.create(header.merge(request_id: request.index, type: 'request'))
10
+ request.add_header(header.merge(request_id: request.index, type: 'request'))
11
11
  end
12
12
  response_headers = (params[:response_headers] || []).map do |header|
13
- headers_repo.create(header.merge(request_id: request.index, type: 'response'))
13
+ request.add_header(header.merge(request_id: request.index, type: 'response'))
14
14
  end
15
15
 
16
- headers = request_headers + response_headers
16
+ headers = (request_headers + response_headers).map { |header| headers_repo.build_entity(header.to_hash) }
17
17
 
18
18
  build_entity(
19
19
  request.to_hash
@@ -73,7 +73,8 @@ module Inferno
73
73
  end
74
74
 
75
75
  class Model < Sequel::Model(db)
76
- many_to_one :result, class: 'Inferno::Repositories::Results::Model', key: :result_id
76
+ many_to_many :result, class: 'Inferno::Repositories::Results::Model', join_table: :requests_results,
77
+ left_key: :request_id, right_key: :result_id
77
78
  one_to_many :headers, class: 'Inferno::Repositories::Headers::Model', key: :request_id
78
79
 
79
80
  def before_create
@@ -15,11 +15,43 @@ module Inferno
15
15
  messages = params.delete(:messages) || []
16
16
  requests = params.delete(:requests) || []
17
17
  super(params).tap do |result|
18
+ result_model = self.class::Model.find(id: result.id)
18
19
  messages.each { |message| messages_repo.create(message.merge(result_id: result.id)) }
19
- requests.each { |request| requests_repo.create(request.to_hash.merge(result_id: result.id)) }
20
+ requests.each do |request|
21
+ request_id =
22
+ if request.id.present?
23
+ request.id
24
+ else
25
+ requests_repo.create(request.to_hash.merge(result_id: result.id)).id
26
+ end
27
+ request_model = requests_repo.class::Model.find(id: request_id)
28
+ result_model.add_request(request_model)
29
+ end
20
30
  end
21
31
  end
22
32
 
33
+ # Get the current result for a particular test/group
34
+ # @api private
35
+ # @example
36
+ # repo.current_result_for_test_session(
37
+ # test_session_id,
38
+ # test_id: 'test_id'
39
+ # )
40
+ def current_result_for_test_session(test_session_id, **params)
41
+ self.class::Model
42
+ .where({ test_session_id: test_session_id }.merge(params))
43
+ .order(Sequel.desc(:updated_at))
44
+ .limit(1)
45
+ .all
46
+ .map! do |result_hash|
47
+ build_entity(
48
+ result_hash
49
+ .to_json_data(json_serializer_options)
50
+ .deep_symbolize_keys!
51
+ )
52
+ end.first
53
+ end
54
+
23
55
  def build_entity(params)
24
56
  runnable =
25
57
  if params[:test_id]
@@ -34,12 +66,85 @@ module Inferno
34
66
  entity_class.new(params.merge(runnable))
35
67
  end
36
68
 
69
+ def result_for_test_run(test_run_id:, **params)
70
+ result_hash =
71
+ self.class::Model
72
+ .find({ test_run_id: test_run_id }.merge(params))
73
+ &.to_hash
74
+
75
+ return nil if result_hash.nil?
76
+
77
+ build_entity(result_hash)
78
+ end
79
+
80
+ def test_run_results_after(test_run_id:, after:)
81
+ Model
82
+ .where(test_run_id: test_run_id)
83
+ .where { updated_at >= after }
84
+ .to_a
85
+ .map! do |result_hash|
86
+ build_entity(
87
+ result_hash
88
+ .to_json_data(json_serializer_options)
89
+ .deep_symbolize_keys!
90
+ )
91
+ end
92
+ end
93
+
94
+ def find_waiting_result(test_run_id:)
95
+ result_hash =
96
+ Model
97
+ .where(test_run_id: test_run_id, result: 'wait')
98
+ .where { test_id !~ nil }
99
+ .limit(1)
100
+ .to_a
101
+ .first
102
+ &.to_hash
103
+
104
+ return nil if result_hash.nil?
105
+
106
+ build_entity(result_hash)
107
+ end
108
+
109
+ # Get all of the current results for a test session
110
+ def current_results_for_test_session(test_session_id)
111
+ self.class::Model
112
+ .current_results_for_test_session(test_session_id)
113
+ .eager(:messages)
114
+ .eager(requests: proc { |requests| requests.select(*Entities::Request::SUMMARY_FIELDS) })
115
+ .all
116
+ .map! do |result_hash|
117
+ build_entity(
118
+ result_hash
119
+ .to_json_data(json_serializer_options)
120
+ .deep_symbolize_keys!
121
+ )
122
+ end
123
+ end
124
+
125
+ # Get the current results for a list of runnables
126
+ def current_results_for_test_session_and_runnables(test_session_id, runnables)
127
+ self.class::Model
128
+ .current_results_for_test_session_and_runnables(test_session_id, runnables)
129
+ .all
130
+ .map! do |result_hash|
131
+ build_entity(
132
+ result_hash
133
+ .to_json_data(json_serializer_options)
134
+ .deep_symbolize_keys!
135
+ )
136
+ end
137
+ end
138
+
139
+ def pass_waiting_result(result_id, message = nil)
140
+ update(result_id, result: 'pass', result_message: message)
141
+ end
142
+
37
143
  def json_serializer_options
38
144
  {
39
145
  include: {
40
146
  messages: {},
41
147
  requests: {
42
- include: { headers: {} },
43
148
  only: Entities::Request::SUMMARY_FIELDS
44
149
  }
45
150
  }
@@ -49,8 +154,33 @@ module Inferno
49
154
  class Model < Sequel::Model(db)
50
155
  include ValidateRunnableReference
51
156
 
157
+ def self.current_results_sql(with_runnables_filter: false)
158
+ query = <<~SQL.gsub(/\s+/, ' ').freeze
159
+ SELECT * FROM results a
160
+ WHERE test_session_id = :test_session_id
161
+ SQL
162
+ runnables_filter = <<~SQL.gsub(/\s+/, ' ').freeze
163
+ AND (test_id IN :test_ids OR test_group_id IN :test_group_ids OR test_suite_id IN :test_suite_ids)
164
+ SQL
165
+ subquery = <<~SQL.gsub(/\s+/, ' ').freeze
166
+ AND a.id IN (
167
+ SELECT id
168
+ FROM results b
169
+ WHERE (b.test_session_id = a.test_session_id AND b.test_id = a.test_id) OR
170
+ (b.test_session_id = a.test_session_id AND b.test_group_id = a.test_group_id) OR
171
+ (b.test_session_id = a.test_session_id AND b.test_suite_id = a.test_suite_id)
172
+ ORDER BY updated_at DESC
173
+ LIMIT 1
174
+ )
175
+ SQL
176
+ return "#{query} #{runnables_filter} #{subquery}" if with_runnables_filter
177
+
178
+ "#{query} #{subquery}"
179
+ end
180
+
52
181
  one_to_many :messages, class: 'Inferno::Repositories::Messages::Model', key: :result_id
53
- one_to_many :requests, class: 'Inferno::Repositories::Requests::Model', key: :result_id
182
+ many_to_many :requests, class: 'Inferno::Repositories::Requests::Model', join_table: :requests_results,
183
+ left_key: :results_id, right_key: :requests_id
54
184
  many_to_one :test_run, class: 'Inferno::Repositories::TestRuns::Model', key: :test_run_id
55
185
  many_to_one :test_session, class: 'Inferno::Repositories::TestSessions::Model', key: :test_session_id
56
186
 
@@ -66,6 +196,24 @@ module Inferno
66
196
  super
67
197
  errors.add(:result, "'#{result}' is not valid") unless Entities::Result::RESULT_OPTIONS.include?(result)
68
198
  end
199
+
200
+ def self.current_results_for_test_session(test_session_id)
201
+ fetch(current_results_sql, test_session_id: test_session_id)
202
+ end
203
+
204
+ def self.current_results_for_test_session_and_runnables(test_session_id, runnables)
205
+ test_ids = runnables.select { |runnable| runnable < Entities::Test }.map!(&:id)
206
+ test_group_ids = runnables.select { |runnable| runnable < Entities::TestGroup }.map!(&:id)
207
+ test_suite_ids = runnables.select { |runnable| runnable < Entities::TestSuite }.map!(&:id)
208
+
209
+ fetch(
210
+ current_results_sql(with_runnables_filter: true),
211
+ test_session_id: test_session_id,
212
+ test_ids: test_ids,
213
+ test_group_ids: test_group_ids,
214
+ test_suite_ids: test_suite_ids
215
+ )
216
+ end
69
217
  end
70
218
  end
71
219
  end
@@ -0,0 +1,47 @@
1
+ module Inferno
2
+ module Repositories
3
+ class SessionData < Repository
4
+ def save(params)
5
+ name = params[:name].to_s.downcase
6
+ test_session_id = params[:test_session_id]
7
+ db
8
+ .insert_conflict(
9
+ target: :id,
10
+ update: { value: params[:value] }
11
+ ).insert(
12
+ id: "#{test_session_id}_#{name}",
13
+ name: name,
14
+ value: params[:value],
15
+ test_session_id: test_session_id
16
+ )
17
+ end
18
+
19
+ def load(test_session_id:, name:)
20
+ self.class::Model
21
+ .find(test_session_id: test_session_id, name: name.to_s.downcase)
22
+ &.value
23
+ end
24
+
25
+ def get_all_from_session(test_session_id)
26
+ self.class::Model
27
+ .where(test_session_id: test_session_id)
28
+ .all
29
+ .map! do |session_data_hash|
30
+ build_entity(
31
+ session_data_hash
32
+ .to_json_data
33
+ .deep_symbolize_keys!
34
+ )
35
+ end
36
+ end
37
+
38
+ def entity_class_name
39
+ 'SessionData'
40
+ end
41
+
42
+ class Model < Sequel::Model(db)
43
+ many_to_one :test_session, class: 'Inferno::Repositories::TestSessions::Model', key: :test_session_id
44
+ end
45
+ end
46
+ end
47
+ end
@@ -24,6 +24,65 @@ module Inferno
24
24
  .map! { |result| results_repo.build_entity(result) }
25
25
  end
26
26
 
27
+ def find_latest_waiting_by_identifier(identifier)
28
+ test_run_hash =
29
+ self.class::Model
30
+ .where(status: 'waiting')
31
+ .where(identifier: identifier)
32
+ .where { wait_timeout >= Time.now }
33
+ .order(Sequel.desc(:updated_at))
34
+ .limit(1)
35
+ .to_a
36
+ &.first
37
+ &.to_hash
38
+
39
+ return nil if test_run_hash.nil?
40
+
41
+ build_entity(test_run_hash)
42
+ end
43
+
44
+ def last_test_run(test_session_id)
45
+ test_run_hash =
46
+ self.class::Model
47
+ .where(test_session_id: test_session_id)
48
+ .order(Sequel.desc(:updated_at))
49
+ .limit(1)
50
+ .to_a
51
+ .map { |record| record.to_json_data(json_serializer_options).deep_symbolize_keys! }
52
+ &.first
53
+ &.to_hash
54
+
55
+ return nil if test_run_hash.nil?
56
+
57
+ build_entity(test_run_hash)
58
+ end
59
+
60
+ def mark_as_running(test_run_id)
61
+ update(test_run_id, status: 'running')
62
+ end
63
+
64
+ def mark_as_done(test_run_id)
65
+ update(test_run_id, status: 'done')
66
+ end
67
+
68
+ def mark_as_waiting(test_run_id, identifier, timeout)
69
+ update(
70
+ test_run_id,
71
+ status: 'waiting',
72
+ identifier: identifier,
73
+ wait_timeout: Time.now + timeout.seconds
74
+ )
75
+ end
76
+
77
+ def mark_as_no_longer_waiting(test_run_id)
78
+ update(
79
+ test_run_id,
80
+ status: 'queued',
81
+ identifier: nil,
82
+ wait_timeout: nil
83
+ )
84
+ end
85
+
27
86
  class Model < Sequel::Model(db)
28
87
  include ValidateRunnableReference
29
88
 
@@ -33,6 +92,13 @@ module Inferno
33
92
  key: :test_run_id
34
93
  many_to_one :test_session, class: 'Inferno::Repositories::TestSessions::Model', key: :test_session_id
35
94
 
95
+ def validate
96
+ super
97
+ if status.present? && !Entities::TestRun::STATUS_OPTIONS.include?(status) # rubocop:disable Style/GuardClause
98
+ errors.add(:status, "'#{status}' is not valid")
99
+ end
100
+ end
101
+
36
102
  def before_create
37
103
  self.id = SecureRandom.uuid
38
104
  time = Time.now
@@ -1,73 +1,165 @@
1
1
  module Inferno
2
2
  # @api private
3
3
  class TestRunner
4
- attr_reader :test_session, :test_run
4
+ attr_reader :test_session, :test_run, :resuming
5
5
 
6
- def initialize(test_session:, test_run:)
6
+ def initialize(test_session:, test_run:, resume: false)
7
7
  @test_session = test_session
8
8
  @test_run = test_run
9
+ @resuming = resume
10
+ end
11
+
12
+ def run_results
13
+ @run_results ||= {}
9
14
  end
10
15
 
11
16
  def results_repo
12
17
  @results_repo ||= Repositories::Results.new
13
18
  end
14
19
 
15
- def run(runnable, inputs = {}, outputs = {})
20
+ def test_runs_repo
21
+ @test_runs_repo ||= Repositories::TestRuns.new
22
+ end
23
+
24
+ def session_data_repo
25
+ @session_data_repo ||= Repositories::SessionData.new
26
+ end
27
+
28
+ def start
29
+ test_runs_repo.mark_as_running(test_run.id)
30
+
31
+ run(test_run.runnable)
32
+
33
+ test_runs_repo.mark_as_done(test_run.id) unless run_results.values.any?(&:waiting?)
34
+
35
+ run_results.values
36
+ end
37
+
38
+ def run(runnable)
16
39
  if runnable < Entities::Test
17
- run_test(runnable, inputs, outputs)
40
+ return existing_test_result(runnable) || run_test(runnable) if resuming
41
+
42
+ run_test(runnable)
18
43
  else
19
- run_group(runnable, inputs, outputs)
44
+ run_group(runnable)
20
45
  end
21
46
  end
22
47
 
23
- def run_test(runnable, inputs = {}, outputs = {})
24
- test_instance = runnable.new(inputs: inputs.merge(outputs), test_session_id: test_session.id)
48
+ def existing_test_result(runnable)
49
+ results_repo.result_for_test_run(runnable.reference_hash.merge(test_run_id: test_run.id))
50
+ end
51
+
52
+ def run_test(test)
53
+ inputs = load_inputs(test)
54
+
55
+ input_json_string = JSON.generate(inputs)
56
+ test_instance = test.new(inputs: inputs, test_session_id: test_session.id)
25
57
 
26
58
  result = begin
27
- inputs.merge(outputs).each do |key, value|
28
- test_instance.instance_variable_set("@#{key}", value)
29
- end
30
59
  test_instance.load_named_requests
31
- test_instance.instance_eval(&runnable.block)
60
+ test_instance.instance_eval(&test.block)
32
61
  'pass'
33
62
  rescue Exceptions::TestResultException => e
34
63
  test_instance.result_message = e.message
35
64
  e.result
36
65
  rescue StandardError => e
66
+ Application['logger'].error(e.full_message)
37
67
  test_instance.result_message = "Error: #{e.message}"
38
68
  'error'
39
69
  end
40
70
 
41
- runnable.outputs.each do |output|
42
- outputs[output] = test_instance.send(output)
71
+ outputs = save_outputs(test_instance)
72
+ output_json_string = JSON.generate(outputs)
73
+
74
+ if result == 'wait'
75
+ test_runs_repo.mark_as_waiting(test_run.id, test_instance.identifier, test_instance.wait_timeout)
43
76
  end
44
77
 
45
- [persist_result(
78
+ test_result = persist_result(
46
79
  {
47
- test_session_id: test_session.id,
48
- test_run_id: test_run.id,
49
80
  messages: test_instance.messages,
50
81
  requests: test_instance.requests,
51
82
  result: result,
52
- result_message: test_instance.result_message
53
- }.merge(runnable.reference_hash)
54
- )]
83
+ result_message: test_instance.result_message,
84
+ input_json: input_json_string,
85
+ output_json: output_json_string
86
+ }.merge(test.reference_hash)
87
+ )
88
+
89
+ # If running a single test, update its parents' results. If running a
90
+ # group or suite, #run_group handles updating the parents.
91
+ return test_result if test_run.test_id.blank?
92
+
93
+ update_parent_result(test.parent)
94
+
95
+ test_result
55
96
  end
56
97
 
57
- def run_group(runnable, inputs = {}, outputs = {})
58
- results = runnable.children.flat_map { |child| run(child, inputs, outputs) }
98
+ def run_group(group)
99
+ results = []
100
+ group.children.each do |child|
101
+ result = run(child)
102
+ results << result
103
+ break if results.last.waiting?
104
+ end
59
105
 
60
- results << persist_result(
61
- {
62
- test_session_id: test_session.id,
63
- test_run_id: test_run.id,
64
- result: roll_up_result(results)
65
- }.merge(runnable.reference_hash)
66
- )
106
+ results.flatten!
107
+
108
+ group_result = persist_result(group.reference_hash.merge(result: roll_up_result(results)))
109
+
110
+ update_parent_result(group.parent)
111
+
112
+ group_result
113
+ end
114
+
115
+ def update_parent_result(parent)
116
+ return if parent.nil?
117
+
118
+ children = parent.children
119
+ child_results = results_repo.current_results_for_test_session_and_runnables(test_session.id, children)
120
+ return if children.length != child_results.length
121
+
122
+ old_result = results_repo.current_result_for_test_session(test_session.id, parent.reference_hash)&.result
123
+ new_result = roll_up_result(child_results)
124
+
125
+ if new_result != old_result
126
+ persist_result(parent.reference_hash.merge(result: new_result))
127
+
128
+ update_parent_result(parent.parent)
129
+ end
130
+
131
+ new_result
132
+ end
133
+
134
+ def load_inputs(runnable)
135
+ runnable.inputs.each_with_object({}) do |input, input_hash|
136
+ name = input[:name]
137
+ input_hash[name] = session_data_repo.load(test_session_id: test_session.id, name: name)
138
+ end
139
+ end
140
+
141
+ def save_outputs(runnable_instance)
142
+ outputs =
143
+ runnable_instance.outputs.map do |output_name|
144
+ {
145
+ name: output_name,
146
+ value: runnable_instance.send(output_name)
147
+ }
148
+ end
149
+ outputs.compact!
150
+ outputs.each do |output|
151
+ session_data_repo.save(output.merge(test_session_id: test_session.id))
152
+ end
153
+
154
+ outputs
67
155
  end
68
156
 
69
157
  def persist_result(params)
70
- results_repo.create(params)
158
+ result = results_repo.create(
159
+ params.merge(test_run_id: test_run.id, test_session_id: test_session.id)
160
+ )
161
+
162
+ run_results[result.runnable.id] = result
71
163
  end
72
164
 
73
165
  def roll_up_result(results)