immunoscore_results_aggregator 0.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- data/.gitignore +4 -0
- data/Gemfile +14 -0
- data/Gemfile.lock +47 -0
- data/README.md +54 -0
- data/Rakefile +2 -0
- data/bin/immunoscore_cli.rb +76 -0
- data/config.rb +14 -0
- data/data_struct.rb +280 -0
- data/docs/aggregator.html +200 -0
- data/docs/analyzer.html +1121 -0
- data/docs/data_struct.html +504 -0
- data/docs/database_connection.html +93 -0
- data/docs/docco.css +506 -0
- data/docs/exporter.html +216 -0
- data/docs/immunoscore_results_loader.html +485 -0
- data/docs/public/fonts/aller-bold.eot +0 -0
- data/docs/public/fonts/aller-bold.ttf +0 -0
- data/docs/public/fonts/aller-bold.woff +0 -0
- data/docs/public/fonts/aller-light.eot +0 -0
- data/docs/public/fonts/aller-light.ttf +0 -0
- data/docs/public/fonts/aller-light.woff +0 -0
- data/docs/public/fonts/novecento-bold.eot +0 -0
- data/docs/public/fonts/novecento-bold.ttf +0 -0
- data/docs/public/fonts/novecento-bold.woff +0 -0
- data/docs/public/stylesheets/normalize.css +375 -0
- data/docs/semicolon_cleaner.html +231 -0
- data/immunoscore_results_aggregator.gemspec +32 -0
- data/immunoscore_results_aggregator.rb +9 -0
- data/lib/analyzer.rb +664 -0
- data/lib/data_struct.rb +280 -0
- data/lib/database_connection.rb +4 -0
- data/lib/exporter.rb +76 -0
- data/lib/immunoscore_results_aggregator/version.rb +3 -0
- data/lib/immunoscore_results_loader.rb +218 -0
- data/lib/mongo_aggregator.rb +106 -0
- data/lib/semicolon_cleaner.rb +68 -0
- data/license.txt +21 -0
- metadata +243 -0
data/docs/docco.css
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|
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326
|
+
.pilcrow {
|
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327
|
+
font: 12px Arial;
|
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328
|
+
text-decoration: none;
|
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329
|
+
color: #454545;
|
|
330
|
+
position: absolute;
|
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331
|
+
top: 3px; left: -20px;
|
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332
|
+
padding: 1px 2px;
|
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333
|
+
opacity: 0;
|
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334
|
+
-webkit-transition: opacity 0.2s linear;
|
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335
|
+
}
|
|
336
|
+
.for-h1 .pilcrow {
|
|
337
|
+
top: 47px;
|
|
338
|
+
}
|
|
339
|
+
.for-h2 .pilcrow, .for-h3 .pilcrow, .for-h4 .pilcrow {
|
|
340
|
+
top: 35px;
|
|
341
|
+
}
|
|
342
|
+
|
|
343
|
+
ul.sections > li > div.annotation:hover .pilcrow {
|
|
344
|
+
opacity: 1;
|
|
345
|
+
}
|
|
346
|
+
}
|
|
347
|
+
|
|
348
|
+
/*---------------------- (> 1025px) ---------------------*/
|
|
349
|
+
@media only screen and (min-width: 1025px) {
|
|
350
|
+
|
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351
|
+
body {
|
|
352
|
+
font-size: 16px;
|
|
353
|
+
line-height: 24px;
|
|
354
|
+
}
|
|
355
|
+
|
|
356
|
+
#background {
|
|
357
|
+
width: 525px;
|
|
358
|
+
}
|
|
359
|
+
ul.sections > li > div.annotation {
|
|
360
|
+
max-width: 525px;
|
|
361
|
+
min-width: 525px;
|
|
362
|
+
padding: 10px 25px 1px 50px;
|
|
363
|
+
}
|
|
364
|
+
ul.sections > li > div.content {
|
|
365
|
+
padding: 9px 15px 16px 25px;
|
|
366
|
+
}
|
|
367
|
+
}
|
|
368
|
+
|
|
369
|
+
/*---------------------- Syntax Highlighting -----------------------------*/
|
|
370
|
+
|
|
371
|
+
td.linenos { background-color: #f0f0f0; padding-right: 10px; }
|
|
372
|
+
span.lineno { background-color: #f0f0f0; padding: 0 5px 0 5px; }
|
|
373
|
+
/*
|
|
374
|
+
|
|
375
|
+
github.com style (c) Vasily Polovnyov <vast@whiteants.net>
|
|
376
|
+
|
|
377
|
+
*/
|
|
378
|
+
|
|
379
|
+
pre code {
|
|
380
|
+
display: block; padding: 0.5em;
|
|
381
|
+
color: #000;
|
|
382
|
+
background: #f8f8ff
|
|
383
|
+
}
|
|
384
|
+
|
|
385
|
+
pre .hljs-comment,
|
|
386
|
+
pre .hljs-template_comment,
|
|
387
|
+
pre .hljs-diff .hljs-header,
|
|
388
|
+
pre .hljs-javadoc {
|
|
389
|
+
color: #408080;
|
|
390
|
+
font-style: italic
|
|
391
|
+
}
|
|
392
|
+
|
|
393
|
+
pre .hljs-keyword,
|
|
394
|
+
pre .hljs-assignment,
|
|
395
|
+
pre .hljs-literal,
|
|
396
|
+
pre .hljs-css .hljs-rule .hljs-keyword,
|
|
397
|
+
pre .hljs-winutils,
|
|
398
|
+
pre .hljs-javascript .hljs-title,
|
|
399
|
+
pre .hljs-lisp .hljs-title,
|
|
400
|
+
pre .hljs-subst {
|
|
401
|
+
color: #954121;
|
|
402
|
+
/*font-weight: bold*/
|
|
403
|
+
}
|
|
404
|
+
|
|
405
|
+
pre .hljs-number,
|
|
406
|
+
pre .hljs-hexcolor {
|
|
407
|
+
color: #40a070
|
|
408
|
+
}
|
|
409
|
+
|
|
410
|
+
pre .hljs-string,
|
|
411
|
+
pre .hljs-tag .hljs-value,
|
|
412
|
+
pre .hljs-phpdoc,
|
|
413
|
+
pre .hljs-tex .hljs-formula {
|
|
414
|
+
color: #219161;
|
|
415
|
+
}
|
|
416
|
+
|
|
417
|
+
pre .hljs-title,
|
|
418
|
+
pre .hljs-id {
|
|
419
|
+
color: #19469D;
|
|
420
|
+
}
|
|
421
|
+
pre .hljs-params {
|
|
422
|
+
color: #00F;
|
|
423
|
+
}
|
|
424
|
+
|
|
425
|
+
pre .hljs-javascript .hljs-title,
|
|
426
|
+
pre .hljs-lisp .hljs-title,
|
|
427
|
+
pre .hljs-subst {
|
|
428
|
+
font-weight: normal
|
|
429
|
+
}
|
|
430
|
+
|
|
431
|
+
pre .hljs-class .hljs-title,
|
|
432
|
+
pre .hljs-haskell .hljs-label,
|
|
433
|
+
pre .hljs-tex .hljs-command {
|
|
434
|
+
color: #458;
|
|
435
|
+
font-weight: bold
|
|
436
|
+
}
|
|
437
|
+
|
|
438
|
+
pre .hljs-tag,
|
|
439
|
+
pre .hljs-tag .hljs-title,
|
|
440
|
+
pre .hljs-rules .hljs-property,
|
|
441
|
+
pre .hljs-django .hljs-tag .hljs-keyword {
|
|
442
|
+
color: #000080;
|
|
443
|
+
font-weight: normal
|
|
444
|
+
}
|
|
445
|
+
|
|
446
|
+
pre .hljs-attribute,
|
|
447
|
+
pre .hljs-variable,
|
|
448
|
+
pre .hljs-instancevar,
|
|
449
|
+
pre .hljs-lisp .hljs-body {
|
|
450
|
+
color: #008080
|
|
451
|
+
}
|
|
452
|
+
|
|
453
|
+
pre .hljs-regexp {
|
|
454
|
+
color: #B68
|
|
455
|
+
}
|
|
456
|
+
|
|
457
|
+
pre .hljs-class {
|
|
458
|
+
color: #458;
|
|
459
|
+
font-weight: bold
|
|
460
|
+
}
|
|
461
|
+
|
|
462
|
+
pre .hljs-symbol,
|
|
463
|
+
pre .hljs-ruby .hljs-symbol .hljs-string,
|
|
464
|
+
pre .hljs-ruby .hljs-symbol .hljs-keyword,
|
|
465
|
+
pre .hljs-ruby .hljs-symbol .hljs-keymethods,
|
|
466
|
+
pre .hljs-lisp .hljs-keyword,
|
|
467
|
+
pre .hljs-tex .hljs-special,
|
|
468
|
+
pre .hljs-input_number {
|
|
469
|
+
color: #990073
|
|
470
|
+
}
|
|
471
|
+
|
|
472
|
+
pre .hljs-builtin,
|
|
473
|
+
pre .hljs-constructor,
|
|
474
|
+
pre .hljs-built_in,
|
|
475
|
+
pre .hljs-lisp .hljs-title {
|
|
476
|
+
color: #0086b3
|
|
477
|
+
}
|
|
478
|
+
|
|
479
|
+
pre .hljs-preprocessor,
|
|
480
|
+
pre .hljs-pi,
|
|
481
|
+
pre .hljs-doctype,
|
|
482
|
+
pre .hljs-shebang,
|
|
483
|
+
pre .hljs-cdata {
|
|
484
|
+
color: #999;
|
|
485
|
+
font-weight: bold
|
|
486
|
+
}
|
|
487
|
+
|
|
488
|
+
pre .hljs-deletion {
|
|
489
|
+
background: #fdd
|
|
490
|
+
}
|
|
491
|
+
|
|
492
|
+
pre .hljs-addition {
|
|
493
|
+
background: #dfd
|
|
494
|
+
}
|
|
495
|
+
|
|
496
|
+
pre .hljs-diff .hljs-change {
|
|
497
|
+
background: #0086b3
|
|
498
|
+
}
|
|
499
|
+
|
|
500
|
+
pre .hljs-chunk {
|
|
501
|
+
color: #aaa
|
|
502
|
+
}
|
|
503
|
+
|
|
504
|
+
pre .hljs-tex .hljs-formula {
|
|
505
|
+
opacity: 0.5;
|
|
506
|
+
}
|