hyrax 4.0.0.rc3 → 5.0.0.rc1
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- checksums.yaml +4 -4
- data/.circleci/config.yml +116 -231
- data/.dassie/.env +3 -1
- data/.dassie/Gemfile +0 -2
- data/.dassie/config/analytics.yml +2 -2
- data/.dassie/config/environments/test.rb +1 -0
- data/.dassie/config/initializers/hyrax.rb +3 -1
- data/.dassie/config/initializers/redis_config.rb +0 -1
- data/.dassie/config/initializers/riiif.rb +13 -3
- data/.dassie/db/schema.rb +2 -2
- data/.dockerignore +6 -0
- data/.github/ISSUE_TEMPLATE.md +14 -9
- data/.github/PULL_REQUEST_TEMPLATE.md +25 -6
- data/.github/release.yml +5 -2
- data/.koppie/.env +3 -0
- data/.koppie/Gemfile +0 -2
- data/.koppie/README.md +11 -11
- data/.koppie/app/forms/collection_resource_form.rb +1 -0
- data/.koppie/app/indexers/collection_resource_indexer.rb +1 -0
- data/.koppie/app/models/collection_resource.rb +1 -0
- data/.koppie/config/analytics.yml +1 -0
- data/.koppie/config/environments/test.rb +1 -0
- data/.koppie/config/initializers/hyrax.rb +8 -2
- data/.koppie/config/initializers/redis_config.rb +0 -1
- data/.koppie/config/initializers/riiif.rb +13 -4
- data/.koppie/config/metadata/collection_resource.yaml +1 -128
- data/.koppie/yarn.lock +23 -23
- data/.regen +1 -1
- data/CONTAINERS.md +15 -15
- data/Dockerfile +6 -11
- data/app/actors/hyrax/actors/base_actor.rb +4 -3
- data/app/actors/hyrax/actors/embargo_actor.rb +5 -2
- data/app/actors/hyrax/actors/lease_actor.rb +5 -2
- data/app/assets/javascripts/hyrax/file_manager/sorting.es6 +3 -2
- data/app/controllers/concerns/hyrax/embargoes_controller_behavior.rb +1 -1
- data/app/controllers/concerns/hyrax/valkyrie_downloads_controller_behavior.rb +74 -0
- data/app/controllers/concerns/hyrax/works_controller_behavior.rb +14 -5
- data/app/controllers/hyrax/admin/workflows_controller.rb +48 -3
- data/app/controllers/hyrax/batch_edits_controller.rb +33 -4
- data/app/controllers/hyrax/downloads_controller.rb +8 -1
- data/app/controllers/hyrax/file_sets_controller.rb +1 -0
- data/app/forms/hyrax/forms/file_set_edit_form.rb +1 -1
- data/app/forms/hyrax/forms/permission_template_form.rb +2 -0
- data/app/forms/hyrax/forms/resource_batch_edit_form.rb +90 -0
- data/app/forms/hyrax/forms/work_embargo_form.rb +1 -0
- data/app/forms/hyrax/forms/work_form.rb +1 -1
- data/app/forms/hyrax/forms/work_lease_form.rb +1 -0
- data/app/helpers/hyrax/dashboard_helper_behavior.rb +17 -9
- data/app/helpers/hyrax/membership_helper.rb +13 -1
- data/app/helpers/hyrax/work_form_helper.rb +0 -107
- data/app/indexers/hyrax/file_set_indexer.rb +6 -0
- data/app/indexers/hyrax/pcdm_collection_indexer.rb +8 -0
- data/app/indexers/hyrax/valkyrie_file_set_indexer.rb +41 -5
- data/app/indexers/hyrax/valkyrie_work_indexer.rb +8 -2
- data/app/jobs/valkyrie_create_derivatives_job.rb +8 -7
- data/app/jobs/valkyrie_ingest_job.rb +0 -1
- data/app/models/admin_set.rb +1 -31
- data/app/models/concerns/hyrax/file_set/derivatives.rb +3 -2
- data/app/models/concerns/hyrax/solr_document_behavior.rb +1 -1
- data/app/models/hyrax/collection_type.rb +5 -14
- data/app/models/hyrax/file_metadata.rb +6 -7
- data/app/models/hyrax/file_set.rb +8 -0
- data/app/models/hyrax/resource.rb +30 -2
- data/app/presenters/hyrax/file_set_presenter.rb +6 -0
- data/app/presenters/hyrax/iiif_manifest_presenter.rb +3 -7
- data/app/presenters/hyrax/presenter_renderer.rb +0 -7
- data/app/presenters/hyrax/work_show_presenter.rb +6 -11
- data/app/search_builders/hyrax/file_set_search_builder.rb +1 -1
- data/app/search_builders/hyrax/valkyrie_abstract_type_relation.rb +37 -0
- data/app/search_builders/hyrax/valkyrie_work_relation.rb +9 -0
- data/app/services/hyrax/analytics/google.rb +23 -15
- data/app/services/hyrax/analytics/matomo.rb +4 -3
- data/app/services/hyrax/characterization/valkyrie_characterization_service.rb +11 -9
- data/app/services/hyrax/custom_queries/find_by_date_range.rb +55 -0
- data/app/services/hyrax/custom_queries/find_count_by.rb +62 -0
- data/app/services/hyrax/custom_queries/find_file_metadata.rb +1 -1
- data/app/services/hyrax/custom_queries/find_models_by_access.rb +59 -0
- data/app/services/hyrax/derivative_bucketed_storage.rb +25 -0
- data/app/services/hyrax/derivative_path.rb +14 -4
- data/app/services/hyrax/embargo_manager.rb +76 -10
- data/app/services/hyrax/file_set_derivatives_service.rb +3 -2
- data/app/services/hyrax/lease_manager.rb +88 -8
- data/app/services/hyrax/listeners/file_metadata_listener.rb +2 -2
- data/app/services/hyrax/listeners/workflow_listener.rb +8 -11
- data/app/services/hyrax/persist_directly_contained_output_file_service.rb +24 -2
- data/app/services/hyrax/solr_query_service.rb +7 -6
- data/app/services/hyrax/statistics/depositors/summary.rb +1 -1
- data/app/services/hyrax/statistics/over_time.rb +1 -1
- data/app/services/hyrax/statistics/users/over_time.rb +3 -1
- data/app/services/hyrax/statistics/valkyrie_query_service.rb +49 -0
- data/app/services/hyrax/statistics/works/count.rb +1 -1
- data/app/services/hyrax/thumbnail_path_service.rb +5 -0
- data/app/services/hyrax/valkyrie_persist_derivatives.rb +16 -11
- data/app/services/hyrax/valkyrie_upload.rb +5 -3
- data/app/services/hyrax/versioning_service.rb +1 -0
- data/app/services/hyrax/visibility_intention.rb +1 -4
- data/app/services/hyrax/visibility_propagator.rb +1 -1
- data/app/services/hyrax/workflow/actionable_objects.rb +28 -3
- data/app/services/hyrax/workflow/grant_edit_to_depositor.rb +1 -1
- data/app/services/hyrax/workflow/grant_read_to_depositor.rb +1 -1
- data/app/services/hyrax/workflow/permission_query.rb +23 -2
- data/app/views/hyrax/admin/workflows/_tabs.html.erb +9 -0
- data/app/views/hyrax/admin/workflows/index.html.erb +53 -76
- data/app/views/hyrax/base/_file_manager_members.html.erb +2 -2
- data/app/views/hyrax/base/_form.html.erb +0 -10
- data/app/views/hyrax/base/_form_files.html.erb +7 -2
- data/app/views/hyrax/base/_form_permission_embargo.html.erb +1 -1
- data/app/views/hyrax/base/_form_permission_lease.html.erb +1 -1
- data/app/views/hyrax/base/_form_visibility_component.html.erb +2 -2
- data/app/views/hyrax/base/_items.html.erb +1 -1
- data/app/views/hyrax/base/file_manager.html.erb +1 -1
- data/app/views/hyrax/base/show.json.jbuilder +2 -2
- data/app/views/hyrax/file_sets/_versioning.html.erb +1 -1
- data/app/views/hyrax/file_sets/show.html.erb +5 -3
- data/app/views/hyrax/homepage/_explore_collections.html.erb +1 -1
- data/chart/hyrax/Chart.yaml +18 -14
- data/chart/hyrax/README.md +34 -21
- data/chart/hyrax/templates/_helpers.tpl +26 -1
- data/chart/hyrax/templates/configmap-env.yaml +12 -2
- data/chart/hyrax/templates/secrets.yaml +1 -1
- data/chart/hyrax/values.yaml +36 -14
- data/config/initializers/listeners.rb +4 -10
- data/config/initializers/storage_adapter_initializer.rb +1 -1
- data/config/locales/hyrax.de.yml +11 -3
- data/config/locales/hyrax.en.yml +13 -2
- data/config/locales/hyrax.es.yml +4 -1
- data/config/locales/hyrax.fr.yml +4 -1
- data/config/locales/hyrax.it.yml +5 -2
- data/config/locales/hyrax.pt-BR.yml +9 -2
- data/config/locales/hyrax.zh.yml +4 -1
- data/config/metadata/file_set_metadata.yaml +1 -1
- data/docker-compose-koppie.yml +17 -4
- data/docker-compose.yml +19 -6
- data/documentation/developing-your-hyrax-based-app.md +6 -14
- data/documentation/legacyREADME.md +7 -5
- data/hyrax.gemspec +2 -2
- data/karma.conf.js +8 -9
- data/lib/generators/hyrax/templates/config/analytics.yml +1 -0
- data/lib/generators/hyrax/templates/config/initializers/hyrax.rb +1 -1
- data/lib/generators/hyrax/templates/config/initializers/redis_config.rb +0 -1
- data/lib/generators/hyrax/templates/config/initializers/riiif.rb +15 -5
- data/lib/hyrax/active_fedora_dummy_model.rb +6 -1
- data/lib/hyrax/configuration.rb +6 -0
- data/lib/hyrax/engine.rb +2 -0
- data/lib/hyrax/publisher.rb +19 -3
- data/lib/hyrax/specs/capybara.rb +9 -4
- data/lib/hyrax/transactions/container.rb +5 -0
- data/lib/hyrax/transactions/steps/add_file_sets.rb +6 -0
- data/lib/hyrax/transactions/steps/apply_permission_template.rb +40 -0
- data/lib/hyrax/transactions/steps/save.rb +21 -0
- data/lib/hyrax/transactions/work_create.rb +1 -0
- data/lib/hyrax/version.rb +1 -1
- data/lib/hyrax.rb +1 -0
- data/lib/wings/active_fedora_converter/default_work.rb +7 -2
- data/lib/wings/active_fedora_converter/file_metadata_node.rb +1 -1
- data/lib/wings/active_fedora_converter.rb +47 -11
- data/lib/wings/model_transformer.rb +23 -4
- data/lib/wings/setup.rb +21 -1
- data/lib/wings/valkyrie/persister.rb +4 -2
- data/package.json +3 -1
- data/template.rb +1 -1
- metadata +15 -10
- data/app/forms/hyrax/forms/file_manager_form.rb +0 -35
- data/app/services/hyrax/collections/migration_service.rb +0 -113
- data/app/views/hyrax/base/_form_collections_error.html.erb +0 -1
- data/app/views/hyrax/base/_form_in_works_error.html.erb +0 -3
- data/app/views/hyrax/base/_form_ordered_members_error.html.erb +0 -3
- data/app/views/hyrax/base/_form_visibility_error.html.erb +0 -19
data/.koppie/README.md
CHANGED
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# Koppie
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> Isolated granite outcrops in Southern Africa that are a favored habitat for hyraxes.
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> Isolated granite outcrops in Southern Africa that are a favored habitat for hyraxes.
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Koppie is an application used for testing the state of [Hyrax](https://github.com/samvera/hyrax)
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using Postgres as the metadata store for objects. This is similar to the Dassie test application
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using Postgres as the metadata store for objects. This is similar to the Dassie test application
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that lives in `.dassie`, however in this application Fedora is
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not used for storing object metadata or files. The Hyrax gem is sourced from the local hyrax
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not used for storing object metadata or files. The Hyrax gem is sourced from the local hyrax
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directory one level up from `.koppie` for development purposes.
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## Known Issues
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Collection model
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* `/app/models/collection.rb` - is_a `ActiveFedora::Base`
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* if `Collection` is changed to `Valkyrie::Resource`, there is an infinite loop while loading
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* if `Collection` is changed to `Valkyrie::Resource`, there is an infinite loop while loading
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due to reference to ::Collection in `lib/hyrax/collection_name.rb` in the hyrax engine
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Default Admin Set
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## Questions
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Please direct questions about this code or the servers where it runs to the `#hyrax-valkyrie`
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Please direct questions about this code or the servers where it runs to the `#hyrax-valkyrie`
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channel on Samvera slack.
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## Contributing
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If you're working on a PR for this project, create a feature branch off of `main`.
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This repository follows the [Samvera Community Code of Conduct](https://samvera.atlassian.net/wiki/spaces/samvera/pages/405212316/Code+of+Conduct)
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This repository follows the [Samvera Community Code of Conduct](https://samvera.atlassian.net/wiki/spaces/samvera/pages/405212316/Code+of+Conduct)
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and [language recommendations](https://github.com/samvera/maintenance/blob/master/templates/CONTRIBUTING.md#language).
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Please ***do not*** create a branch called `master` for this repository or as part of your pull request; the branch will
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either need to be removed or renamed before it can be considered for inclusion in the code base and history of this repository.
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Execute the following commands from the hyrax root to start the app using Docker.
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```
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docker
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docker
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docker compose -f docker-compose-koppie.yml build
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docker compose -f docker-compose-koppie.yml up
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```
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You can find help with additional commands in Hyrax' [FAQ-for-Dassie-Docker-Test-App](https://github.com/samvera/hyrax/wiki/FAQ-for-Dassie-Docker-Test-App).
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Most commands can be used directly as described in the FAQ. A few might require
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a slight adjustment to work with koppie as a Docker app.
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You can find help with additional commands in Hyrax' [FAQ-for-Dassie-Docker-Test-App](https://github.com/samvera/hyrax/wiki/FAQ-for-Dassie-Docker-Test-App).
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Most commands can be used directly as described in the FAQ. A few might require
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a slight adjustment to work with koppie as a Docker app.
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analytics_id: <%= ENV['GOOGLE_ANALYTICS_ID'] %>
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app_name: <%= ENV.fetch('GOOGLE_OAUTH_APP_NAME', 'nurax-pg') %>
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app_version: <%= ENV.fetch['GOOGLE_OAUTH_APP_VERSION'] %>
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privkey_value: <%= ENV['GOOGLE_OAUTH_PRIVATE_KEY_VALUE'] %>
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privkey_path: <%= ENV.fetch['GOOGLE_OAUTH_PRIVATE_KEY_PATH'] %>
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privkey_secret: <%= ENV.fetch['GOOGLE_OAUTH_PRIVATE_KEY_SECRET'] %>
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client_email: <%= ENV.fetch['GOOGLE_OAUTH_CLIENT_EMAIL'] %>
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Rails.application.configure do
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# Settings specified here will take precedence over those in config/application.rb.
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config.assets.debug = true
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# The test environment is used exclusively to run your application's
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# test suite. You never need to work with it otherwise. Remember that
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config.disable_wings = true # not needed if ENV includes HYRAX_SKIP_WINGS=true
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config.characterization_options = { ch12n_tool: ENV.fetch('CH12N_TOOL', 'fits').to_sym }
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# Register roles that are expected by your implementation.
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# @see Hyrax::RoleRegistry for additional details.
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# @note there are magical roles as defined in Hyrax::RoleRegistry::MAGIC_ROLES
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# Location autocomplete uses geonames to search for named regions
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# Username for connecting to geonames
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config.geonames_username = ENV['GEONAMES_USERNAME'] || ''
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# Should the acceptance of the licence agreement be active (checkbox), or
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# implied when the save button is pressed? Set to true for active
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Hyrax::CustomQueries::Navigators::ParentCollectionsNavigator,
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Hyrax::CustomQueries::Navigators::ChildFileSetsNavigator,
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Hyrax::CustomQueries::Navigators::ChildWorksNavigator,
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Hyrax::CustomQueries::Navigators::ParentWorkNavigator,
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Hyrax::CustomQueries::Navigators::FindFiles,
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Hyrax::CustomQueries::FindAccessControl,
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Hyrax::CustomQueries::FindCollectionsByType,
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Hyrax::CustomQueries::FindFileMetadata,
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Hyrax::CustomQueries::FindIdsByModel,
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Hyrax::CustomQueries::FindManyByAlternateIds
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Hyrax::CustomQueries::FindManyByAlternateIds,
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Hyrax::CustomQueries::FindModelsByAccess,
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Hyrax::CustomQueries::FindCountBy,
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Hyrax::CustomQueries::FindByDateRange]
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custom_queries.each do |handler|
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Hyrax.query_service.custom_queries.register_query_handler(handler)
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end
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require 'redis'
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require 'connection_pool'
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config = YAML.safe_load(ERB.new(IO.read(Rails.root.join('config', 'redis.yml'))).result)[Rails.env].with_indifferent_access
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config[:thread_safe] = true
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size = ENV.fetch("HYRAX_REDIS_POOL_SIZE", 5)
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timeout = ENV.fetch("HYRAX_REDIS_TIMEOUT", 5)
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{ height: doc['height_is'], width: doc['width_is'], format: doc['mime_type_ssi'], channels: doc['alpha_channels_ssi'] }
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end
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if Hyrax.config.use_valkyrie?
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# Use Valkyrie adapter to make sure file is available locally. Riiif will just open it then
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# id comes in with the format "FILE_SET_ID/files/FILE_ID"
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Riiif::Image.file_resolver.id_to_uri = lambda do |id|
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file_metadata = Hyrax.query_service.find_by(id: id.split('/').last)
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file = Hyrax.storage_adapter.find_by(id: file_metadata.file_identifier)
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file.disk_path.to_s
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end
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else
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Riiif::Image.file_resolver.id_to_uri = lambda do |id|
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Hyrax::Base.id_to_uri(CGI.unescape(id)).tap do |url|
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Rails.logger.info "Riiif resolved #{id} to #{url}"
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end
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end
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end
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Riiif::Image.authorization_service = Hyrax::IiifAuthorizationService
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Riiif.not_found_image = Rails.root.join('app', 'assets', 'images', 'us_404.svg')
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# Generated via
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# `rails generate hyrax:collection_resource CollectionResource`
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attributes:
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description:
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type: string
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multiple: true
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form:
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primary: true
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index_keys:
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- "description_tesim"
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creator:
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type: string
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multiple: true
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form:
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required: false
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primary: false
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index_keys:
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- "creator_tesim"
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rights_statement:
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type: string
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multiple: true
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form:
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primary: false
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abstract:
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type: string
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-
multiple: true
|
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|
-
form:
|
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|
-
primary: false
|
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|
-
access_right:
|
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|
-
type: string
|
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|
-
multiple: true
|
51
|
-
form:
|
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|
-
primary: false
|
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|
-
alternative_title:
|
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|
-
type: string
|
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|
-
multiple: true
|
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|
-
form:
|
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|
-
primary: false
|
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|
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based_near:
|
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|
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type: string
|
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|
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multiple: true
|
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|
-
form:
|
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primary: false
|
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|
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index_keys:
|
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|
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- "based_near_sim"
|
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|
-
- "based_near_tesim"
|
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|
-
bibliographic_citation:
|
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|
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type: string
|
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|
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multiple: true
|
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|
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contributor:
|
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|
-
type: string
|
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|
-
multiple: true
|
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|
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form:
|
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|
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primary: false
|
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|
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|
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|
-
type: date_time
|
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|
-
multiple: true
|
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|
-
form:
|
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|
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primary: false
|
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|
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index_keys:
|
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|
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- "date_created_tesim"
|
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|
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identifier:
|
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|
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type: string
|
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|
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multiple: true
|
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|
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form:
|
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|
-
primary: false
|
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|
-
import_url:
|
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|
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type: string
|
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|
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keyword:
|
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|
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type: string
|
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|
-
multiple: true
|
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|
-
index_keys:
|
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|
-
- "keyword_sim"
|
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|
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- "keyword_tesim"
|
94
|
-
form:
|
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|
-
primary: false
|
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|
-
publisher:
|
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|
-
type: string
|
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|
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multiple: true
|
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|
-
form:
|
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|
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primary: false
|
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|
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label:
|
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|
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type: string
|
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|
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form:
|
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|
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primary: false
|
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|
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language:
|
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|
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type: string
|
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|
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multiple: true
|
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|
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form:
|
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|
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primary: false
|
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|
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license:
|
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|
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type: string
|
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|
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multiple: true
|
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|
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form:
|
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|
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primary: false
|
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|
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relative_path:
|
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|
-
type: string
|
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|
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related_url:
|
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|
-
type: string
|
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|
-
multiple: true
|
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|
-
form:
|
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|
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primary: false
|
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|
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index_keys:
|
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|
-
- "related_url_tesim"
|
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|
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resource_type:
|
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|
-
type: string
|
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|
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multiple: true
|
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|
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form:
|
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|
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primary: false
|
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|
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index_keys:
|
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|
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- "resource_type_sim"
|
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|
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- "resource_type_tesim"
|
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|
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rights_notes:
|
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|
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type: string
|
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|
-
multiple: true
|
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|
-
form:
|
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|
-
primary: false
|
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|
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source:
|
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|
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type: string
|
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|
-
multiple: true
|
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|
-
form:
|
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|
-
primary: false
|
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|
-
subject:
|
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|
-
type: string
|
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|
-
multiple: true
|
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|
-
index_keys:
|
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|
-
- "subject_sim"
|
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|
-
- "subject_tesim"
|
148
|
-
form:
|
149
|
-
primary: false
|
22
|
+
attributes: {}
|
data/.koppie/yarn.lock
CHANGED
@@ -706,7 +706,7 @@ iconv-lite@^0.6.2:
|
|
706
706
|
immediate@~3.0.5:
|
707
707
|
version "3.0.6"
|
708
708
|
resolved "https://registry.yarnpkg.com/immediate/-/immediate-3.0.6.tgz#9db1dbd0faf8de6fbe0f5dd5e56bb606280de69b"
|
709
|
-
integrity
|
709
|
+
integrity sha512-XXOFtyqDjNDAQxVfYxuF7g9Il/IbWmmlQg2MYKOH8ExIT1qg6xc4zyS3HaEEATgs1btfzxq15ciUiY7gjSXRGQ==
|
710
710
|
|
711
711
|
imsc@^1.0.1-rc.1:
|
712
712
|
version "1.1.2"
|
@@ -757,7 +757,7 @@ is-typedarray@~1.0.0:
|
|
757
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|
isarray@~1.0.0:
|
758
758
|
version "1.0.0"
|
759
759
|
resolved "https://registry.yarnpkg.com/isarray/-/isarray-1.0.0.tgz#bb935d48582cba168c06834957a54a3e07124f11"
|
760
|
-
integrity
|
760
|
+
integrity sha512-VLghIWNM6ELQzo7zwmcg0NmTVyWKYjvIeM83yjp0wRDTmUnrM678fQbcKBo6n2CJEF0szoG//ytg+TKla89ALQ==
|
761
761
|
|
762
762
|
isexe@^2.0.0:
|
763
763
|
version "2.0.0"
|
@@ -818,9 +818,9 @@ json-stringify-safe@~5.0.1:
|
|
818
818
|
integrity sha1-Epai1Y/UXxmg9s4B1lcB4sc1tus=
|
819
819
|
|
820
820
|
json5@^1.0.1:
|
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|
-
version "1.0.
|
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|
-
resolved "https://registry.yarnpkg.com/json5/-/json5-1.0.
|
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|
-
integrity sha512-
|
821
|
+
version "1.0.2"
|
822
|
+
resolved "https://registry.yarnpkg.com/json5/-/json5-1.0.2.tgz#63d98d60f21b313b77c4d6da18bfa69d80e1d593"
|
823
|
+
integrity sha512-g1MWMLBiz8FKi1e4w0UyVL3w+iJceWAFBAaBnnGKOpNa5f8TLktkbre1+s6oICydWAm+HRUGTmI+//xv2hvXYA==
|
824
824
|
dependencies:
|
825
825
|
minimist "^1.2.0"
|
826
826
|
|
@@ -840,14 +840,14 @@ jsviews@0.9.83:
|
|
840
840
|
integrity sha1-BpsFEigz0jFVzDziwtn7LPeJqYo=
|
841
841
|
|
842
842
|
jszip@*, jszip@^3.1.5, jszip@^3.2.2:
|
843
|
-
version "3.
|
844
|
-
resolved "https://registry.yarnpkg.com/jszip/-/jszip-3.
|
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|
-
integrity sha512-
|
843
|
+
version "3.10.1"
|
844
|
+
resolved "https://registry.yarnpkg.com/jszip/-/jszip-3.10.1.tgz#34aee70eb18ea1faec2f589208a157d1feb091c2"
|
845
|
+
integrity sha512-xXDvecyTpGLrqFrvkrUSoxxfJI5AH7U8zxxtVclpsUtMCq4JQ290LY8AW5c7Ggnr/Y/oK+bQMbqK2qmtk3pN4g==
|
846
846
|
dependencies:
|
847
847
|
lie "~3.3.0"
|
848
848
|
pako "~1.0.2"
|
849
849
|
readable-stream "~2.3.6"
|
850
|
-
|
850
|
+
setimmediate "^1.0.5"
|
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|
|
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852
|
lie@3.1.1:
|
853
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|
version "3.1.1"
|
@@ -864,9 +864,9 @@ lie@~3.3.0:
|
|
864
864
|
immediate "~3.0.5"
|
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|
|
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866
|
loader-utils@^1.0.0:
|
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|
-
version "1.4.
|
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|
-
resolved "https://registry.yarnpkg.com/loader-utils/-/loader-utils-1.4.
|
869
|
-
integrity sha512-
|
867
|
+
version "1.4.2"
|
868
|
+
resolved "https://registry.yarnpkg.com/loader-utils/-/loader-utils-1.4.2.tgz#29a957f3a63973883eb684f10ffd3d151fec01a3"
|
869
|
+
integrity sha512-I5d00Pd/jwMD2QCduo657+YM/6L3KZu++pmX9VFncxaxvHcru9jx1lBaFft+r4Mt2jK0Yhp41XlRAihzPxHNCg==
|
870
870
|
dependencies:
|
871
871
|
big.js "^5.2.2"
|
872
872
|
emojis-list "^3.0.0"
|
@@ -953,9 +953,9 @@ minimist@1.2.0:
|
|
953
953
|
integrity sha1-o1AIsg9BOD7sH7kU9M1d95omQoQ=
|
954
954
|
|
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955
|
minimist@^1.2.0:
|
956
|
-
version "1.2.
|
957
|
-
resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.
|
958
|
-
integrity sha512-
|
956
|
+
version "1.2.7"
|
957
|
+
resolved "https://registry.yarnpkg.com/minimist/-/minimist-1.2.7.tgz#daa1c4d91f507390437c6a8bc01078e7000c4d18"
|
958
|
+
integrity sha512-bzfL1YUZsP41gmu/qjrEk0Q6i2ix/cVeAhbCbqH9u3zYutS1cLg00qhrD0M2MVdCcx4Sc0UpP2eBWo9rotpq6g==
|
959
959
|
|
960
960
|
mute-stream@0.0.7:
|
961
961
|
version "0.0.7"
|
@@ -1100,9 +1100,9 @@ punycode@^2.1.0, punycode@^2.1.1:
|
|
1100
1100
|
integrity sha512-XRsRjdf+j5ml+y/6GKHPZbrF/8p2Yga0JPtdqTIY2Xe5ohJPD9saDJJLPvp9+NSBprVvevdXZybnj2cv8OEd0A==
|
1101
1101
|
|
1102
1102
|
qs@~6.5.2:
|
1103
|
-
version "6.5.
|
1104
|
-
resolved "https://registry.yarnpkg.com/qs/-/qs-6.5.
|
1105
|
-
integrity sha512-
|
1103
|
+
version "6.5.3"
|
1104
|
+
resolved "https://registry.yarnpkg.com/qs/-/qs-6.5.3.tgz#3aeeffc91967ef6e35c0e488ef46fb296ab76aad"
|
1105
|
+
integrity sha512-qxXIEh4pCGfHICj1mAJQ2/2XVZkjCDTcEgfoSQxc/fYivUZxTkk7L3bDBJSoNrEzXI17oUO5Dp07ktqE5KzczA==
|
1106
1106
|
|
1107
1107
|
readable-stream@^2.0.2, readable-stream@~2.3.6:
|
1108
1108
|
version "2.3.7"
|
@@ -1209,10 +1209,10 @@ schema-utils@^0.4.0:
|
|
1209
1209
|
ajv "^6.1.0"
|
1210
1210
|
ajv-keywords "^3.1.0"
|
1211
1211
|
|
1212
|
-
|
1213
|
-
version "1.0.
|
1214
|
-
resolved "https://registry.yarnpkg.com/
|
1215
|
-
integrity
|
1212
|
+
setimmediate@^1.0.5:
|
1213
|
+
version "1.0.5"
|
1214
|
+
resolved "https://registry.yarnpkg.com/setimmediate/-/setimmediate-1.0.5.tgz#290cbb232e306942d7d7ea9b83732ab7856f8285"
|
1215
|
+
integrity sha512-MATJdZp8sLqDl/68LfQmbP8zKPLQNV6BIZoIgrscFDQ+RsvK/BxeDQOgyxKKoh0y/8h3BqVFnCqQ/gd+reiIXA==
|
1216
1216
|
|
1217
1217
|
shebang-command@^2.0.0:
|
1218
1218
|
version "2.0.0"
|
@@ -1419,7 +1419,7 @@ url-toolkit@^2.1.2:
|
|
1419
1419
|
util-deprecate@~1.0.1:
|
1420
1420
|
version "1.0.2"
|
1421
1421
|
resolved "https://registry.yarnpkg.com/util-deprecate/-/util-deprecate-1.0.2.tgz#450d4dc9fa70de732762fbd2d4a28981419a0ccf"
|
1422
|
-
integrity
|
1422
|
+
integrity sha512-EPD5q1uXyFxJpCrLnCc1nHnq3gOa6DZBocAIiI2TaSCA7VCJ1UJDMagCzIkXNsUYfD1daK//LTEQ8xiIbrHtcw==
|
1423
1423
|
|
1424
1424
|
uuid@^3.3.2:
|
1425
1425
|
version "3.4.0"
|
data/.regen
CHANGED
@@ -1,2 +1,2 @@
|
|
1
1
|
# When updating CI regen seed, set to current date.
|
2
|
-
2023-
|
2
|
+
2023-08-09T14:34:59
|
data/CONTAINERS.md
CHANGED
@@ -13,7 +13,7 @@ There are two options for development environments to run:
|
|
13
13
|
<!-- NOTE: This title is referenced in the top-level README.md. Keep that in mind if you change it. -->
|
14
14
|
## Hyrax Engine Development
|
15
15
|
|
16
|
-
We support a `docker
|
16
|
+
We support a `docker compose`-based development environment for folks working on
|
17
17
|
the Hyrax engine. This environment is substantially more like a Hyrax production
|
18
18
|
setup than the older `fedora_wrapper`/`solr_wrapper` approach.
|
19
19
|
|
@@ -24,8 +24,8 @@ First, make sure you have installed [Docker](https://www.docker.com/). Then clo
|
|
24
24
|
Within your cloned repository, tell Docker to get started installing your development environment:
|
25
25
|
|
26
26
|
```sh
|
27
|
-
docker
|
28
|
-
docker
|
27
|
+
docker compose build
|
28
|
+
docker compose up
|
29
29
|
```
|
30
30
|
|
31
31
|
This starts containers for:
|
@@ -40,24 +40,24 @@ This starts containers for:
|
|
40
40
|
|
41
41
|
It also runs database migrations. This will also bring up a development application on `http://localhost:3000`.
|
42
42
|
|
43
|
-
To stop the containers for the Hyrax-based application, type <kbd>Ctrl</kbd>+<kbd>c</kbd>. To restart the containers you need only run `docker
|
43
|
+
To stop the containers for the Hyrax-based application, type <kbd>Ctrl</kbd>+<kbd>c</kbd>. To restart the containers you need only run `docker compose up`.
|
44
44
|
|
45
45
|
_**Note:** Starting and stopping Docker in this way will preserve your data between restarts._
|
46
46
|
|
47
47
|
#### Code Changes and Testing
|
48
48
|
|
49
|
-
With `docker
|
49
|
+
With `docker compose up` running, any changes you make to your cloned Hyrax code-base should show up in `http://localhost:3000`; There may be cases where you need to restart your test application (e.g. stop the containers and start them up again).
|
50
50
|
|
51
51
|
Any changes you make to Hyrax should be tested. You can run the full test suite using the following command:
|
52
52
|
|
53
53
|
```sh
|
54
|
-
docker
|
54
|
+
docker compose exec -w /app/samvera/hyrax-engine app sh -c "bundle exec rspec"
|
55
55
|
```
|
56
56
|
|
57
57
|
Let's break down the above command:
|
58
58
|
|
59
59
|
<dl>
|
60
|
-
<dt><code>docker
|
60
|
+
<dt><code>docker compose exec</code></dt>
|
61
61
|
<dd>Tell docker to run the following:</dd>
|
62
62
|
<dt><code>-w /app/samvera/hyrax-engine</code></dt>
|
63
63
|
<dd>In the working directory "/app/samvera/hyrax-engine" (e.g. your cloned Hyrax repository)</dd>
|
@@ -86,13 +86,13 @@ bind mount to `/app/samvera/hyrax-webapp`, and your local development copy of Hy
|
|
86
86
|
What does this structure mean? Let's look at an example. The following command will list the rake tasks for the Hyrax-based application running in Docker:
|
87
87
|
|
88
88
|
```sh
|
89
|
-
docker
|
89
|
+
docker compose exec -w /app/samvera/hyrax-webapp app sh -c "bundle exec rake -T"
|
90
90
|
```
|
91
91
|
|
92
92
|
And this command lists the rake tasks for the Hyrax engine that is in Docker:
|
93
93
|
|
94
94
|
```sh
|
95
|
-
docker
|
95
|
+
docker compose exec -w /app/samvera/hyrax-engine app sh -c "bundle exec rake -T"
|
96
96
|
```
|
97
97
|
|
98
98
|
In the two examples, note the difference in the `-w` switch. In the first case, it's referencing the Hyrax-based application. In the latter case, it's referencing the Hyrax engine.
|
@@ -101,7 +101,7 @@ In the two examples, note the difference in the `-w` switch. In the first case,
|
|
101
101
|
|
102
102
|
If you are interested in running Hyrax in debug mode, this requires a somewhat different approach than running Hyrax bare-metal. You need to use `docker attach` to debug the running docker instance.
|
103
103
|
|
104
|
-
1. With `docker
|
104
|
+
1. With `docker compose up` running open a new Terminal session.
|
105
105
|
2. In that new Terminal session, using `docker container ls` find the "CONTAINER ID" for the `hyrax-engine-dev`.
|
106
106
|
3. With the "CONTAINER ID", run `docker attach <CONTAINER ID>`.
|
107
107
|
|
@@ -111,7 +111,7 @@ This advice comes from [Debugging Rails App With Docker Compose: How to use Byeb
|
|
111
111
|
|
112
112
|
##### Bad Address SOLR
|
113
113
|
|
114
|
-
With `docker
|
114
|
+
With `docker compose up` running, if you see the following, then there may be issues with file permissions:
|
115
115
|
|
116
116
|
```
|
117
117
|
db_migrate_1 | waiting for solr:8983
|
@@ -125,15 +125,15 @@ Executing /opt/docker-solr/scripts/precreate-core hyrax_test /opt/solr/server/co
|
|
125
125
|
cp: cannot create directory '/var/solr/data/hyrax_test': Permission denied
|
126
126
|
```
|
127
127
|
|
128
|
-
The solution that appears to work is to `docker
|
128
|
+
The solution that appears to work is to `docker compose down --volumes`; This will tear down the docker instance, and remove the volumes. You can then run `docker compose up` to get back to work. _**Note:** the `--volumes` switch will remove all custom data._
|
129
129
|
|
130
130
|
##### Errors building the Docker image
|
131
131
|
|
132
|
-
If you encounter errors running `docker
|
132
|
+
If you encounter errors running `docker compose build`, try running `bundle update` in `./hyrax` as well as within `./hyrax/.dassie`. That can help clear up the problem of a failure to build a particular gem.
|
133
133
|
|
134
134
|
##### Containers do not all start
|
135
135
|
|
136
|
-
If any of the services fail to start on `docker
|
136
|
+
If any of the services fail to start on `docker compose up`, try clearing out any `Gemfile.lock` files that might exist in `./hyrax` or `./hyrax/.dassie` and run `docker compose build` again, then `docker compose up` again.
|
137
137
|
|
138
138
|
### Koppie Internal Test App with Valkyrie Connector to Postgres
|
139
139
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@@ -191,7 +191,7 @@ We publish several Hyrax images to the [GitHub container registry][ghcr] under
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191
191
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the [Samvera organization][samvera-packages]. To build them:
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```sh
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194
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-
export HYRAX_VERSION=
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+
export HYRAX_VERSION=v5.0.0.rc1 # or desired version
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git checkout hyrax-$HYRAX_VERSION
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docker build --target hyrax-base --tag ghcr.io/samvera/hyrax/hyrax-base:$(git rev-parse HEAD) .
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data/Dockerfile
CHANGED
@@ -1,15 +1,10 @@
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1
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-
ARG
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1
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+
ARG ALPINE_VERSION=3.18
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2
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+
ARG RUBY_VERSION=3.2.2
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2
3
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3
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-
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4
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-
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5
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-
RUN apk add build-base curl
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6
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-
RUN curl -sL https://github.com/jemalloc/jemalloc/releases/download/5.3.0/jemalloc-5.3.0.tar.bz2 | tar -xj && \
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7
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-
cd jemalloc-5.3.0 && \
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8
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-
./configure && \
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9
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-
make && \
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10
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-
make install
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4
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+
FROM ruby:$RUBY_VERSION-alpine$ALPINE_VERSION as builder
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5
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+
RUN apk add build-base curl jemalloc
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11
6
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12
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-
FROM ruby:$RUBY_VERSION-
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7
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+
FROM ruby:$RUBY_VERSION-alpine$ALPINE_VERSION as hyrax-base
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13
8
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14
9
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ARG DATABASE_APK_PACKAGE="postgresql-dev"
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15
10
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ARG EXTRA_APK_PACKAGES="git"
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@@ -43,7 +38,7 @@ ENV PATH="/app/samvera:$PATH"
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43
38
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ENV RAILS_ROOT="/app/samvera/hyrax-webapp"
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39
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ENV RAILS_SERVE_STATIC_FILES="1"
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45
40
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46
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-
COPY --from=builder /usr/
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41
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+
COPY --from=builder /usr/lib/libjemalloc.so.2 /usr/local/lib/
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47
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ENV LD_PRELOAD="/usr/local/lib/libjemalloc.so.2"
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48
43
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49
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ENTRYPOINT ["hyrax-entrypoint.sh"]
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@@ -71,7 +71,8 @@ module Hyrax
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def save(env, use_valkyrie: false)
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return env.curation_concern.save unless use_valkyrie
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73
73
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|
74
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-
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74
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+
# don't run validations again on the converted object if they've already passed
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+
resource = valkyrie_save(resource: env.curation_concern.valkyrie_resource, is_valid: env.curation_concern.save)
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75
76
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# we need to manually set the id and reload, because the actor stack requires
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# `env.curation_concern` to be the exact same instance throughout.
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@@ -115,9 +116,9 @@ module Hyrax
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115
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attributes.select { |_, v| v.respond_to?(:select) && !v.respond_to?(:read) }
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end
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117
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|
118
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-
def valkyrie_save(resource:)
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+
def valkyrie_save(resource:, is_valid:)
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permissions = resource.permission_manager.acl.permissions
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-
resource = Hyrax.persister.save(resource: resource)
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+
resource = Hyrax.persister.save(resource: resource, perform_af_validation: !is_valid)
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122
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resource.permission_manager.acl.permissions = permissions
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resource.permission_manager.acl.save
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@@ -15,8 +15,11 @@ module Hyrax
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15
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case work
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when Valkyrie::Resource
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embargo_manager = Hyrax::EmbargoManager.new(resource: work)
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18
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-
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19
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-
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18
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+
return if embargo_manager.embargo.embargo_release_date.blank?
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19
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+
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20
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+
embargo_manager.deactivate!
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+
work.embargo = Hyrax.persister.save(resource: embargo_manager.embargo)
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+
Hyrax::AccessControlList(work).save
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else
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work.embargo_visibility! # If the embargo has lapsed, update the current visibility.
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work.deactivate_embargo!
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@@ -15,8 +15,11 @@ module Hyrax
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15
15
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case work
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when Valkyrie::Resource
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17
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lease_manager = Hyrax::LeaseManager.new(resource: work)
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18
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-
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19
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-
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18
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+
return if lease_manager.lease.lease_expiration_date.blank?
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19
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+
|
20
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+
lease_manager.deactivate!
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+
work.lease = Hyrax.persister.save(resource: lease_manager.lease)
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22
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+
Hyrax::AccessControlList(work).save
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20
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else
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21
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work.lease_visibility! # If the lease has lapsed, update the current visibility.
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22
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work.deactivate_lease!
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@@ -4,6 +4,7 @@ export default class SortManager {
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4
4
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this.sorting_info = {}
|
5
5
|
this.initialize_sort()
|
6
6
|
this.element.data("current-order", this.order)
|
7
|
+
this.sort_property = this.element.data("sort-property")
|
7
8
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this.save_manager = save_manager
|
8
9
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this.initialize_alpha_sort_button()
|
9
10
|
}
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@@ -38,9 +39,9 @@ export default class SortManager {
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|
38
39
|
params() {
|
39
40
|
let params = {}
|
40
41
|
params[this.singular_class_name] = {
|
41
|
-
"version": this.version
|
42
|
-
"ordered_member_ids": this.order
|
42
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+
"version": this.version
|
43
43
|
}
|
44
|
+
params[this.singular_class_name][this.sort_property] = this.order
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44
45
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params["_method"] = "PATCH"
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45
46
|
return params
|
46
47
|
}
|
@@ -15,7 +15,7 @@ module Hyrax
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|
15
15
|
# Removes a single embargo
|
16
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|
def destroy
|
17
17
|
Hyrax::Actors::EmbargoActor.new(curation_concern).destroy
|
18
|
-
flash[:notice] = embargo_history(curation_concern)
|
18
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+
flash[:notice] = embargo_history(curation_concern).last
|
19
19
|
if curation_concern.work? && work_has_file_set_members?(curation_concern)
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20
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|
redirect_to confirm_permission_path
|
21
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|
else
|