htslib 0.1.0 → 0.2.2

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@@ -59,7 +59,7 @@ module HTS
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  attach_function \
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  :tbx_seqnames,
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- [Tbx, :int],
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+ [Tbx, :pointer],
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  :pointer
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  attach_function \
@@ -0,0 +1,25 @@
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+ module HTS
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+ module LibHTS
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+ class << self
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+ def tbx_itr_destroy(iter)
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+ hts_itr_destroy(iter)
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+ end
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+
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+ def tbx_itr_queryi(tbx, tid, beg, end_)
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+ hts_itr_query(tbx[:idx], tid, beg, end_, tbx_readrec)
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+ end
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+
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+ def tbx_itr_querys(tbx, s)
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+ hts_itr_querys(tbx[:idx], s, @@tbx_name2id, tbx, @@hts_itr_query, @@tbx_readrec)
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+ end
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+
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+ def tbx_itr_next(htsfp, tbx, itr, r)
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+ hts_itr_next(hts_get_bgzfp(htsfp), itr, r, tbx)
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+ end
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+
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+ def tbx_bgzf_itr_next(bgzfp, tbx, itr, r)
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+ hts_itr_next(bgzfp, itr, r, tbx)
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+ end
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+ end
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+ end
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+ end