htslib 0.1.0 → 0.2.2

data/lib/hts/libhts/tbx.rb

@@ -59,7 +59,7 @@ module HTS
 
     attach_function \
       :tbx_seqnames,
-      [Tbx, :int],
+      [Tbx, :pointer],
       :pointer
 
     attach_function \

data/lib/hts/libhts/tbx_funcs.rb

@@ -0,0 +1,25 @@
+module HTS
+  module LibHTS
+    class << self
+      def tbx_itr_destroy(iter)
+        hts_itr_destroy(iter)
+      end
+
+      def tbx_itr_queryi(tbx, tid, beg, end_)
+        hts_itr_query(tbx[:idx], tid, beg, end_, tbx_readrec)
+      end
+
+      def tbx_itr_querys(tbx, s)
+        hts_itr_querys(tbx[:idx], s, @@tbx_name2id, tbx, @@hts_itr_query, @@tbx_readrec)
+      end
+
+      def tbx_itr_next(htsfp, tbx, itr, r)
+        hts_itr_next(hts_get_bgzfp(htsfp), itr, r, tbx)
+      end
+
+      def tbx_bgzf_itr_next(bgzfp, tbx, itr, r)
+        hts_itr_next(bgzfp, itr, r, tbx)
+      end
+    end
+  end
+end