htslib 0.1.0 → 0.2.0

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Files changed (28) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +13 -7
  3. data/lib/hts/bam/aux.rb +1 -0
  4. data/lib/hts/bam/cigar.rb +5 -7
  5. data/lib/hts/bam/flag.rb +5 -0
  6. data/lib/hts/bam/header.rb +1 -0
  7. data/lib/hts/bam/record.rb +7 -4
  8. data/lib/hts/bam.rb +82 -21
  9. data/lib/hts/bcf/format.rb +4 -4
  10. data/lib/hts/bcf/header.rb +1 -0
  11. data/lib/hts/bcf/info.rb +3 -2
  12. data/lib/hts/bcf/record.rb +30 -29
  13. data/lib/hts/bcf.rb +106 -26
  14. data/lib/hts/faidx.rb +24 -14
  15. data/lib/hts/hts.rb +49 -2
  16. data/lib/hts/libhts/bgzf.rb +5 -5
  17. data/lib/hts/libhts/constants.rb +26 -5
  18. data/lib/hts/libhts/cram.rb +287 -279
  19. data/lib/hts/libhts/hfile.rb +29 -11
  20. data/lib/hts/libhts/hts.rb +158 -25
  21. data/lib/hts/libhts/sam.rb +683 -94
  22. data/lib/hts/libhts/sam_funcs.rb +92 -588
  23. data/lib/hts/libhts/vcf.rb +433 -234
  24. data/lib/hts/libhts/vcf_funcs.rb +232 -424
  25. data/lib/hts/libhts.rb +1 -0
  26. data/lib/hts/tbx.rb +3 -4
  27. data/lib/hts/version.rb +1 -1
  28. metadata +3 -3
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: htslib
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  version: !ruby/object:Gem::Version
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- version: 0.1.0
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+ version: 0.2.0
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  platform: ruby
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  authors:
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  - kojix2
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2022-05-06 00:00:00.000000000 Z
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+ date: 2022-05-29 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ffi
@@ -176,7 +176,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="
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  - !ruby/object:Gem::Version
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- version: '2.7'
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+ version: '3.1'
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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  - - ">="