htslib 0.0.8 → 0.0.10

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Files changed (25) hide show
  1. checksums.yaml +4 -4
  2. data/README.md +25 -24
  3. data/lib/hts/bam/cigar.rb +5 -4
  4. data/lib/hts/bam/flag.rb +1 -1
  5. data/lib/hts/bam/header.rb +1 -1
  6. data/lib/hts/bam/record.rb +5 -11
  7. data/lib/hts/bam.rb +56 -46
  8. data/lib/hts/bcf/format.rb +1 -1
  9. data/lib/hts/bcf/header.rb +4 -4
  10. data/lib/hts/bcf/info.rb +1 -1
  11. data/lib/hts/bcf/record.rb +4 -3
  12. data/lib/hts/bcf.rb +39 -27
  13. data/lib/hts/faidx.rb +6 -4
  14. data/lib/hts/hts.rb +56 -0
  15. data/lib/hts/libhts/bgzf.rb +10 -5
  16. data/lib/hts/libhts/constants.rb +22 -4
  17. data/lib/hts/libhts/cram.rb +297 -0
  18. data/lib/hts/libhts/hfile.rb +19 -11
  19. data/lib/hts/libhts/hts.rb +2 -2
  20. data/lib/hts/libhts/sam_funcs.rb +2 -1
  21. data/lib/hts/libhts.rb +4 -3
  22. data/lib/hts/tabix.rb +42 -17
  23. data/lib/hts/version.rb +1 -1
  24. data/lib/htslib.rb +5 -5
  25. metadata +4 -2
metadata CHANGED
@@ -1,14 +1,14 @@
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  --- !ruby/object:Gem::Specification
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  name: htslib
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  version: !ruby/object:Gem::Version
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- version: 0.0.8
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+ version: 0.0.10
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  platform: ruby
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  authors:
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  - kojix2
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2022-03-15 00:00:00.000000000 Z
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+ date: 2022-04-15 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ffi
@@ -144,9 +144,11 @@ files:
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  - lib/hts/faidx.rb
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  - lib/hts/ffi_ext/README.md
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  - lib/hts/ffi_ext/struct.rb
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+ - lib/hts/hts.rb
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  - lib/hts/libhts.rb
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  - lib/hts/libhts/bgzf.rb
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  - lib/hts/libhts/constants.rb
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+ - lib/hts/libhts/cram.rb
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  - lib/hts/libhts/faidx.rb
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  - lib/hts/libhts/hfile.rb
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  - lib/hts/libhts/hts.rb