htslib 0.0.10 → 0.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +16 -16
- data/lib/hts/bam/aux.rb +39 -0
- data/lib/hts/bam/cigar.rb +0 -3
- data/lib/hts/bam/flag.rb +21 -57
- data/lib/hts/bam/header.rb +1 -4
- data/lib/hts/bam/record.rb +91 -47
- data/lib/hts/bam.rb +14 -15
- data/lib/hts/bcf/format.rb +82 -11
- data/lib/hts/bcf/info.rb +56 -31
- data/lib/hts/bcf/record.rb +43 -16
- data/lib/hts/bcf.rb +40 -15
- data/lib/hts/faidx.rb +0 -3
- data/lib/hts/ffi_ext/pointer.rb +18 -0
- data/lib/hts/hts.rb +22 -4
- data/lib/hts/libhts/constants.rb +3 -3
- data/lib/hts/libhts/cram.rb +287 -292
- data/lib/hts/libhts/vcf.rb +14 -0
- data/lib/hts/libhts.rb +4 -0
- data/lib/hts/{tabix.rb → tbx.rb} +4 -11
- data/lib/hts/version.rb +1 -1
- data/lib/htslib.rb +1 -1
- metadata +5 -3
metadata
CHANGED
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@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
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name: htslib
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version: !ruby/object:Gem::Version
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-
version: 0.0
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4
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+
version: 0.1.0
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platform: ruby
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authors:
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- kojix2
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2022-
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11
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+
date: 2022-05-06 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: ffi
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@@ -132,6 +132,7 @@ files:
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- LICENSE.txt
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- README.md
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- lib/hts/bam.rb
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135
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+
- lib/hts/bam/aux.rb
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- lib/hts/bam/cigar.rb
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- lib/hts/bam/flag.rb
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- lib/hts/bam/header.rb
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@@ -143,6 +144,7 @@ files:
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- lib/hts/bcf/record.rb
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- lib/hts/faidx.rb
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- lib/hts/ffi_ext/README.md
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147
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+
- lib/hts/ffi_ext/pointer.rb
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146
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- lib/hts/ffi_ext/struct.rb
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- lib/hts/hts.rb
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- lib/hts/libhts.rb
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@@ -159,7 +161,7 @@ files:
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- lib/hts/libhts/thread_pool.rb
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- lib/hts/libhts/vcf.rb
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- lib/hts/libhts/vcf_funcs.rb
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-
- lib/hts/
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+
- lib/hts/tbx.rb
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- lib/hts/version.rb
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- lib/htslib.rb
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165
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homepage: https://github.com/kojix2/ruby-htslib
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