htslib 0.0.10 → 0.1.0
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- checksums.yaml +4 -4
- data/README.md +16 -16
- data/lib/hts/bam/aux.rb +39 -0
- data/lib/hts/bam/cigar.rb +0 -3
- data/lib/hts/bam/flag.rb +21 -57
- data/lib/hts/bam/header.rb +1 -4
- data/lib/hts/bam/record.rb +91 -47
- data/lib/hts/bam.rb +14 -15
- data/lib/hts/bcf/format.rb +82 -11
- data/lib/hts/bcf/info.rb +56 -31
- data/lib/hts/bcf/record.rb +43 -16
- data/lib/hts/bcf.rb +40 -15
- data/lib/hts/faidx.rb +0 -3
- data/lib/hts/ffi_ext/pointer.rb +18 -0
- data/lib/hts/hts.rb +22 -4
- data/lib/hts/libhts/constants.rb +3 -3
- data/lib/hts/libhts/cram.rb +287 -292
- data/lib/hts/libhts/vcf.rb +14 -0
- data/lib/hts/libhts.rb +4 -0
- data/lib/hts/{tabix.rb → tbx.rb} +4 -11
- data/lib/hts/version.rb +1 -1
- data/lib/htslib.rb +1 -1
- metadata +5 -3
metadata
CHANGED
@@ -1,14 +1,14 @@
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1
1
|
--- !ruby/object:Gem::Specification
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2
2
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name: htslib
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3
3
|
version: !ruby/object:Gem::Version
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4
|
-
version: 0.0
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4
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+
version: 0.1.0
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5
5
|
platform: ruby
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6
6
|
authors:
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7
7
|
- kojix2
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8
8
|
autorequire:
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9
9
|
bindir: bin
|
10
10
|
cert_chain: []
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11
|
-
date: 2022-
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11
|
+
date: 2022-05-06 00:00:00.000000000 Z
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12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
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14
14
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name: ffi
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@@ -132,6 +132,7 @@ files:
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|
132
132
|
- LICENSE.txt
|
133
133
|
- README.md
|
134
134
|
- lib/hts/bam.rb
|
135
|
+
- lib/hts/bam/aux.rb
|
135
136
|
- lib/hts/bam/cigar.rb
|
136
137
|
- lib/hts/bam/flag.rb
|
137
138
|
- lib/hts/bam/header.rb
|
@@ -143,6 +144,7 @@ files:
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|
143
144
|
- lib/hts/bcf/record.rb
|
144
145
|
- lib/hts/faidx.rb
|
145
146
|
- lib/hts/ffi_ext/README.md
|
147
|
+
- lib/hts/ffi_ext/pointer.rb
|
146
148
|
- lib/hts/ffi_ext/struct.rb
|
147
149
|
- lib/hts/hts.rb
|
148
150
|
- lib/hts/libhts.rb
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@@ -159,7 +161,7 @@ files:
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|
159
161
|
- lib/hts/libhts/thread_pool.rb
|
160
162
|
- lib/hts/libhts/vcf.rb
|
161
163
|
- lib/hts/libhts/vcf_funcs.rb
|
162
|
-
- lib/hts/
|
164
|
+
- lib/hts/tbx.rb
|
163
165
|
- lib/hts/version.rb
|
164
166
|
- lib/htslib.rb
|
165
167
|
homepage: https://github.com/kojix2/ruby-htslib
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