htslib 0.0.0.pre

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+ # Create a skeleton using hts-python as a reference.
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+ # https://github.com/quinlan-lab/hts-python
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+
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+ class Tbx
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+ def initialize; end
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+
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+ def build; end
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+
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+ def sequences; end
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+
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+ # def __call__\
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+ end
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+ # Create a skeleton using hts-python as a reference.
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+ # https://github.com/quinlan-lab/hts-python
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+
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+ class VCF
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+ def initialize; end
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+
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+ def inspect; end
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+
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+ def each; end
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+
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+ def seq; end
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+
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+ def n_samples; end
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+ end
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+
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+ class Variant
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+ def initialize; end
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+
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+ def inspect; end
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+
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+ def formats; end
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+
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+ def genotypes; end
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+ end
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+
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+ class Format
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+ def initialize; end
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+ end
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+ # frozen_string_literal: true
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+
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+ module HTS
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+ VERSION = '0.0.0.pre'
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+ end
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+ # frozen_string_literal: true
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+
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+ require 'ffi'
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+
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+ require 'hts/version'
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+
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+ module HTS
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+ class Error < StandardError; end
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+
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+ class << self
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+ attr_accessor :ffi_lib
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+ end
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+ self.ffi_lib = File.expand_path("libhts.#{FFI::Platform::LIBSUFFIX}", ENV['HTSLIBDIR'])
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+ autoload :FFI, 'hts/ffi'
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+ end
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+
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+ # alias
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+ HTSlib = HTS
metadata ADDED
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+ --- !ruby/object:Gem::Specification
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+ name: htslib
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+ version: !ruby/object:Gem::Version
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+ version: 0.0.0.pre
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+ platform: ruby
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+ authors:
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+ - kojix2
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+ autorequire:
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+ bindir: bin
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+ cert_chain: []
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+ date: 2020-08-20 00:00:00.000000000 Z
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+ dependencies:
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+ - !ruby/object:Gem::Dependency
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+ name: ffi
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :runtime
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: bundler
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: pry
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: rake
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: rspec
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ - !ruby/object:Gem::Dependency
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+ name: rubocop
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+ requirement: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ type: :development
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+ prerelease: false
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+ version_requirements: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '0'
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+ description:
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+ email:
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+ - 2xijok@gmail.com
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+ executables: []
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+ extensions: []
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+ extra_rdoc_files: []
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+ files:
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+ - LICENSE.txt
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+ - README.md
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+ - lib/hts/bam.rb
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+ - lib/hts/fai.rb
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+ - lib/hts/ffi.rb
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+ - lib/hts/ffi/bgzf.rb
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+ - lib/hts/ffi/faidx.rb
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+ - lib/hts/ffi/hfile.rb
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+ - lib/hts/ffi/hts.rb
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+ - lib/hts/ffi/kfunc.rb
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+ - lib/hts/ffi/sam.rb
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+ - lib/hts/ffi/struct.rb
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+ - lib/hts/ffi/tbx.rb
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+ - lib/hts/ffi_constants.rb
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+ - lib/hts/tbx.rb
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+ - lib/hts/vcf.rb
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+ - lib/hts/version.rb
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+ - lib/htslib.rb
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+ homepage: https://github.com/kojix2/ruby-htslib
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+ licenses:
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+ - MIT
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+ metadata: {}
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+ post_install_message:
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+ rdoc_options: []
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+ require_paths:
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+ - lib
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+ required_ruby_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">="
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+ - !ruby/object:Gem::Version
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+ version: '2.4'
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+ required_rubygems_version: !ruby/object:Gem::Requirement
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+ requirements:
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+ - - ">"
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+ - !ruby/object:Gem::Version
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+ version: 1.3.1
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+ requirements: []
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+ rubygems_version: 3.1.2
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+ signing_key:
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+ specification_version: 4
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+ summary: HTSlib bindings for Ruby
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+ test_files: []