hquery-patient-api 0.3.0
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- data/.gitignore +6 -0
- data/.travis.yml +17 -0
- data/Gemfile +14 -0
- data/LICENSE +57 -0
- data/README.md +34 -0
- data/Rakefile +41 -0
- data/VERSION +1 -0
- data/app/assets/javascripts/allergy.js.coffee +79 -0
- data/app/assets/javascripts/caregoal.js.coffee +18 -0
- data/app/assets/javascripts/condition.js.coffee +88 -0
- data/app/assets/javascripts/core.js.coffee +556 -0
- data/app/assets/javascripts/encounter.js.coffee +56 -0
- data/app/assets/javascripts/functionalstatus.js.coffee +48 -0
- data/app/assets/javascripts/immunization.js.coffee +115 -0
- data/app/assets/javascripts/languages.js.coffee +29 -0
- data/app/assets/javascripts/medicalequipment.js.coffee +28 -0
- data/app/assets/javascripts/medication.js.coffee +280 -0
- data/app/assets/javascripts/patient.js.coffee +302 -0
- data/app/assets/javascripts/pregnancy.js.coffee +24 -0
- data/app/assets/javascripts/procedure.js.coffee +28 -0
- data/app/assets/javascripts/provider.js.coffee +55 -0
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- data/doc/jsdoc-toolkit/README.txt +183 -0
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- data/doc/jsdoc-toolkit/java/src/JsDebugRun.java +21 -0
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- data/doc/jsdoc-toolkit/out/jsdoc/symbols/src/tmp_patient.js.html +89 -0
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- data/hquery_patientapi.gemspec +14 -0
- data/lib/hquery-patient-api.rb +4 -0
- data/lib/hquery/engine.rb +4 -0
- data/lib/hquery/generator.rb +18 -0
- data/test/fixtures/patient/barry_berry.json +466 -0
- data/test/test_helper.rb +25 -0
- data/test/unit/patient_api_test.rb +178 -0
- metadata +193 -0
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###*
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@namespace scoping into the hquery namespace
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###
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this.hQuery ||= {}
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# =require core.coffee
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###*
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An Encounter is an interaction, regardless of the setting, between a patient and a
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practitioner who is vested with primary responsibility for diagnosing, evaluating,
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or treating the patient's condition. It may include visits, appointments, as well
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as non face-to-face interactions. It is also a contact between a patient and a
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practitioner who has primary responsibility for assessing and treating the
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patient at a given contact, exercising independent judgment.
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@class An Encounter is an interaction, regardless of the setting, between a patient and a
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practitioner
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@augments hQuery.CodedEntry
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@exports Encounter as hQuery.Encounter
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###
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class hQuery.Encounter extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns {String}
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####
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dischargeDisp: -> @json['dischargeDisp']
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###*
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A code indicating the priority of the admission (e.g., Emergency, Urgent, Elective, et cetera) from
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National Uniform Billing Committee (NUBC)
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@returns {CodedValue}
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###
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admitType: -> new hQuery.CodedValue @json['admitType']['code'], @json['admitType']['codeSystem']
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###*
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@returns {hQuery.Actor}
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###
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performer: -> new hQuery.Actor @json['performer']
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###*
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@returns {hQuery.Organization}
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###
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facility: -> new hQuery.Facility @json['facility']
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@returns {hQuery.DateRange}
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###
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encounterDuration: -> new hQuery.DateRange @json
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###*
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@returns {hQuery.CodedEntry}
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###
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reasonForVisit: -> new hQuery.CodedEntry @json['reason']
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###*
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@namespace scoping into the hquery namespace
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###
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this.hQuery ||= {}
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# =require core.coffee
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###*
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This class can be used to represnt a functional status for a patient. Currently,
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it is not a very close representation of functional status as it is represented
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in the HL7 CCD, HITSP C32 or Consolidated CDA.
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In the previously mentioned specifications, functional status may represented
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using either a condition or result. Having "mixed" types of entries in a section
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is currently not well supported in the existing Record class
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Additionally, there is a mismatch between the data needed to calculate Stage 2
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Meaningful Use Quailty Measures and the data contained in patient summary
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standards. The CQMs are checking to see if a functional status represented by
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a result was patient supplied. Right now, results do not have a source, and
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even if we were to use Provider as a source, it would need to be extended
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to support patients.
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To avoid this, the patient sumamry style functional status has been "flattened"
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into this class. This model supports the information needed to calculate
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Stage 2 MU CQMs. If importers are created from C32 or CCDA, the information
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can be stored here, but it will be a lossy transformation.
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@class
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@augments hQuery.CodedEntry
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@exports FunctionalStatus as hQuery.FunctionalStatus
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###
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class hQuery.FunctionalStatus extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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Either "condition" or "result"
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@returns {String}
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###
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type: -> @json["type"]
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###*
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A coded value. Like a code for patient supplied.
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@returns {hQuery.CodedValue}
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###
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source: ->
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if @json["source"]?
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new hQuery.CodedValue @json["source"]["code"], @json["source"]["codeSystem"]
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###*
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@namespace scoping into the hquery namespace
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###
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this.hQuery ||= {}
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# =require core.coffee
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# =require medication.coffee
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###*
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NoImmunzation as defined by value set 2.16.840.1.113883.1.11.19717
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The terms come from Health Level Seven (HL7) Version 3.0 Vocabulary and are managed by HL7
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It indicates the reason an immunization was not administered.
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@class NoImmunization - describes the status of the medication
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@augments hQuery.CodedEntry
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@exports NoImmunization as hQuery.NoImmunization
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###
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class hQuery.NoImmunization extends hQuery.CodedValue
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IMMUNITY = "IMMUNE"
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MED_PRECAUTION = "MEDPREC"
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OUT_OF_STOCK = "OSTOCK"
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PAT_OBJ = "PATOBJ"
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PHIL_OBJ = "PHILISOP"
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REL_OBJ = "RELIG"
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VAC_EFF = "VACEFF"
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VAC_SAFETY = "VACSAF"
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###*
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@returns {Boolean}
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###
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isImmune: -> @c is IMMUNITY
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@returns {Boolean}
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###
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isMedPrec: -> @c is MED_PRECAUTION
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@returns {Boolean}
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###
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isOstock: -> @c is OUT_OF_STOCK
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@returns {Boolean}
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###
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isPatObj: -> @c is PAT_OBJ
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@returns {Boolean}
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###
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isPhilisop: -> @c is PHIL_OBJ
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@returns {Boolean}
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###
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isRelig: -> @c is REL_OBJ
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@returns {Boolean}
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###
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isVacEff: -> @c is VAC_EFF
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@returns {Boolean}
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###
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isVacSaf: -> @c is VAC_SAFETY
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###*
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@class represents a immunization entry for a patient.
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@augments hQuery.CodedEntry
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@exports Immunization as hQuery.Immunization
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###
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class hQuery.Immunization extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns{hQuery.Scalar}
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###
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medicationSeriesNumber: -> new hQuery.Scalar @json['medicationSeriesNumber']
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@returns{hQuery.MedicationInformation}
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###
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medicationInformation: ->new hQuery.MedicationInformation @json
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###*
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@returns{Date} Date immunization was administered
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###
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administeredDate: -> dateFromUtcSeconds @json['administeredDate']
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###*
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@returns{hQuery.Actor} Performer of immunization
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###
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performer:-> new hQuery.Actor @json['performer']
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###*
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@returns {comment} human readable description of event
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###
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comment: -> @json['comment']
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@returns {Boolean} whether the immunization has been refused by the patient.
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###
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refusalInd: -> @json['negationInd']
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###*
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NoImmunzation as defined by value set 2.16.840.1.113883.1.11.19717
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The terms come from Health Level Seven (HL7) Version 3.0 Vocabulary and are managed by HL7
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It indicates the reason an immunization was not administered.
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@returns {hQuery.NoImmunization} Used to indicate reason an immunization was not administered.
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###
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refusalReason: -> new hQuery.NoImmunization @json['negationReason']['code'], @json['negationReason']['codeSystem']
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###*
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@namespace scoping into the hquery namespace
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###
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this.hQuery ||= {}
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# =require core.coffee
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###*
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@class
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@augments hQuery.CodedEntry
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@exports Language as hQuery.Language
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###
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class hQuery.Language extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns {hQuery.CodedValue}
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###
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modeCode: -> new hQuery.CodedValue @json['modeCode']['code'], @json['modeCode']['codeSystem']
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###*
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@returns {String}
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###
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preferenceIndicator: -> @json['preferenceIndicator']
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###*
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@namespace scoping into the hquery namespace
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###
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this.hQuery ||= {}
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# =require core.coffee
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###*
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The Medical Equipment section contains information describing a patients implanted and external medical devices and equipment that their health status depends on, as well as any pertinent equipment or device history.
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The template identifier for this section is 2.16.840.1.113883.3.88.11.83.128
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C83-[CT-128-1] This section shall conform to the HL7 CCD section, and shall contain a templateId element whose root attribute is 2.16.840.1.113883.10.20.1.7.
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C83-[CT-128-2] This section SHALL conform to the IHE Medical Devices Section, and shall contain a templateId element whose root attribute is 1.3.6.1.4.1.19376.1.5.3.1.1.5.3.5
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@exports MedicalEquipment as hQuery.MedicalEquipment
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@augments hQuery.CodedEntry
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###
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class hQuery.MedicalEquipment extends hQuery.CodedEntry
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constructor: (@json) ->
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super(@json)
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###*
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@returns {CodedValue}
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###
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anatomicalStructure: -> new hQuery.CodedValue @json['anatomicalStructure']['code'], @json['anatomicalStructure']['codeSystem']
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###*
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@namespace scoping into the hquery namespace
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this.hQuery ||= {}
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# =require core.coffee
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###*
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@class MedicationInformation
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@exports MedicationInformation as hQuery.MedicationInformation
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###
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class hQuery.MedicationInformation
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constructor: (@json) ->
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###*
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An array of hQuery.CodedValue describing the medication
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@returns {Array}
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####
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codedProduct: -> hQuery.createCodedValues @json['codes']
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freeTextProductName: -> @json['description']
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codedBrandName: -> @json['codedBrandName']
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freeTextBrandName: -> @json['brandName']
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drugManufacturer: ->
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if(@json['drugManufacturer'])
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new hQuery.Organization(@json['drugManufacturer'])
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###*
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@class AdministrationTiming - the
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@exports AdministrationTiming as hQuery.AdministrationTiming
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###
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class hQuery.AdministrationTiming
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constructor: (@json) ->
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###*
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Provides the period of medication administration as a Scalar. An example
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Scalar that would be returned would be with value = 8 and units = hours. This would
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mean that the medication should be taken every 8 hours.
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@returns {hQuery.Scalar}
|
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###
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period: -> new hQuery.Scalar @json['period']
|
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|
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###*
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Indicates whether it is the interval (time between dosing), or frequency
|
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(number of doses in a time period) that is important. If instititutionSpecified is not
|
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present or is set to false, then the time between dosing is important (every 8 hours).
|
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If true, then the frequency of administration is important (e.g., 3 times per day).
|
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@returns {Boolean}
|
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###
|
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institutionSpecified: -> @json['institutionSpecified']
|
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|
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###*
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@class DoseRestriction - restrictions on the medications dose, represented by a upper and lower dose
|
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@exports DoseRestriction as hQuery.DoseRestriction
|
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###
|
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class hQuery.DoseRestriction
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constructor: (@json) ->
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numerator: -> new hQuery.Scalar @json['numerator']
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denominator: -> new hQuery.Scalar @json['denominator']
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|
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###*
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@class Fulfillment - information about when and who fulfilled an order for the medication
|
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@exports Fulfillment as hQuery.Fullfilement
|
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###
|
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class hQuery.Fulfillment
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constructor: (@json) ->
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dispenseDate: -> hQuery.dateFromUtcSeconds @json['dispenseDate']
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dispensingPharmacyLocation: -> new hQuery.Address @json['dispensingPharmacyLocation']
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quantityDispensed: -> new hQuery.Scalar @json['quantityDispensed']
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prescriptionNumber: -> @json['prescriptionNumber']
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fillNumber: -> @json['fillNumber']
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fillStatus: -> new hQuery.Status @json['fillStatus']
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+
|
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|
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###*
|
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@class OrderInformation - information abour an order for a medication
|
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@exports OrderInformation as hQuery.OrderInformation
|
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|
+
###
|
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class hQuery.OrderInformation
|
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constructor: (@json) ->
|
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|
+
|
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orderNumber: -> @json['orderNumber']
|
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fills: -> @json['fills']
|
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quantityOrdered: -> new hQuery.Scalar @json['quantityOrdered']
|
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orderExpirationDateTime: -> hQuery.dateFromUtcSeconds @json['orderExpirationDateTime']
|
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orderDateTime: -> hQuery.dateFromUtcSeconds @json['orderDateTime']
|
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|
+
|
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+
|
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|
+
###*
|
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+
TypeOfMedication as defined by value set 2.16.840.1.113883.3.88.12.3221.8.19
|
91
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+
which pulls two values from SNOMED to describe whether a medication is
|
92
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+
prescription or over the counter
|
93
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+
|
94
|
+
@class TypeOfMedication - describes whether a medication is prescription or
|
95
|
+
over the counter
|
96
|
+
@augments hQuery.CodedEntry
|
97
|
+
@exports TypeOfMedication as hQuery.TypeOfMedication
|
98
|
+
###
|
99
|
+
class hQuery.TypeOfMedication extends hQuery.CodedValue
|
100
|
+
PRESECRIPTION = "73639000" # SNOMED code for preseciption medications
|
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+
OTC = "329505003" # SNOMED code for over the counter medications
|
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|
+
|
103
|
+
###*
|
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|
+
@returns {Boolean}
|
105
|
+
###
|
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|
+
isPrescription: -> @c is PRESECRIPTION
|
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|
+
|
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|
+
###*
|
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|
+
@returns {Boolean}
|
110
|
+
###
|
111
|
+
isOverTheCounter: -> @c is OTC
|
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|
+
|
113
|
+
|
114
|
+
###*
|
115
|
+
StatusOfMedication as defined by value set 2.16.840.1.113883.1.11.20.7
|
116
|
+
The terms come from SNOMED and are managed by HL7
|
117
|
+
|
118
|
+
@class StatusOfMedication - describes the status of the medication
|
119
|
+
@augments hQuery.CodedEntry
|
120
|
+
@exports StatusOfMedication as hQuery.StatusOfMedication
|
121
|
+
###
|
122
|
+
class hQuery.StatusOfMedication extends hQuery.CodedValue
|
123
|
+
ON_HOLD = "392521001"
|
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|
+
NO_LONGER_ACTIVE = "421139008"
|
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|
+
ACTIVE = "55561003"
|
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|
+
PRIOR_HISTORY = "73425007"
|
127
|
+
|
128
|
+
###*
|
129
|
+
@returns {Boolean}
|
130
|
+
###
|
131
|
+
isOnHold: -> @c is ON_HOLD
|
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|
+
|
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|
+
###*
|
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|
+
@returns {Boolean}
|
135
|
+
###
|
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|
+
isNoLongerActive: -> @c is NO_LONGER_ACTIVE
|
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|
+
|
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|
+
###*
|
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|
+
@returns {Boolean}
|
140
|
+
###
|
141
|
+
isActive: -> @c is ACTIVE
|
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|
+
|
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|
+
###*
|
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|
+
@returns {Boolean}
|
145
|
+
###
|
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|
+
isPriorHistory: -> @c is PRIOR_HISTORY
|
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|
+
|
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|
+
###*
|
149
|
+
@class represents a medication entry for a patient.
|
150
|
+
@augments hQuery.CodedEntry
|
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|
+
@exports Medication as hQuery.Medication
|
152
|
+
###
|
153
|
+
class hQuery.Medication extends hQuery.CodedEntry
|
154
|
+
constructor: (@json) ->
|
155
|
+
super(@json)
|
156
|
+
|
157
|
+
###*
|
158
|
+
@returns {String}
|
159
|
+
####
|
160
|
+
freeTextSig: -> @json['freeTextSig']
|
161
|
+
|
162
|
+
###*
|
163
|
+
The actual or intended start of a medication. Slight deviation from greenCDA for C32 since
|
164
|
+
it combines this with medication stop
|
165
|
+
@returns {Date}
|
166
|
+
###
|
167
|
+
indicateMedicationStart: -> hQuery.dateFromUtcSeconds @json['start_time']
|
168
|
+
|
169
|
+
###*
|
170
|
+
The actual or intended stop of a medication. Slight deviation from greenCDA for C32 since
|
171
|
+
it combines this with medication start
|
172
|
+
@returns {Date}
|
173
|
+
###
|
174
|
+
indicateMedicationStop: -> hQuery.dateFromUtcSeconds @json['end_time']
|
175
|
+
|
176
|
+
administrationTiming: -> new hQuery.AdministrationTiming @json['administrationTiming']
|
177
|
+
|
178
|
+
###*
|
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|
+
@returns {CodedValue} Contains routeCode or adminstrationUnitCode information.
|
180
|
+
Route code shall have a a value drawn from FDA route of adminstration,
|
181
|
+
and indicates how the medication is received by the patient.
|
182
|
+
See http://www.fda.gov/Drugs/DevelopmentApprovalProcess/UCM070829
|
183
|
+
The administration unit code shall have a value drawn from the FDA
|
184
|
+
dosage form, source NCI thesaurus and represents the physical form of the
|
185
|
+
product as presented to the patient.
|
186
|
+
See http://www.fda.gov/Drugs/InformationOnDrugs/ucm142454.htm
|
187
|
+
###
|
188
|
+
route: -> new hQuery.CodedValue @json['route']['code'], @json['route']['codeSystem']
|
189
|
+
|
190
|
+
###*
|
191
|
+
@returns {hQuery.Scalar} the dose
|
192
|
+
###
|
193
|
+
dose: -> new hQuery.Scalar @json['dose']
|
194
|
+
|
195
|
+
###*
|
196
|
+
@returns {CodedValue}
|
197
|
+
###
|
198
|
+
site: -> new hQuery.CodedValue @json['site']['code'], @json['site']['codeSystem']
|
199
|
+
|
200
|
+
###*
|
201
|
+
@returns {hQuery.DoseRestriction}
|
202
|
+
###
|
203
|
+
doseRestriction: -> new hQuery.DoseRestriction @json['doseRestriction']
|
204
|
+
|
205
|
+
###*
|
206
|
+
@returns {String}
|
207
|
+
###
|
208
|
+
doseIndicator: -> @json['doseIndicator']
|
209
|
+
|
210
|
+
###*
|
211
|
+
@returns {String}
|
212
|
+
###
|
213
|
+
fulfillmentInstructions: -> @json['fulfillmentInstructions']
|
214
|
+
|
215
|
+
###*
|
216
|
+
@returns {CodedValue}
|
217
|
+
###
|
218
|
+
indication: -> new hQuery.CodedValue @json['indication']['code'], @json['indication']['codeSystem']
|
219
|
+
|
220
|
+
###*
|
221
|
+
@returns {CodedValue}
|
222
|
+
###
|
223
|
+
productForm: -> new hQuery.CodedValue @json['productForm']['code'], @json['productForm']['codeSystem']
|
224
|
+
|
225
|
+
###*
|
226
|
+
@returns {CodedValue}
|
227
|
+
###
|
228
|
+
vehicle: -> new hQuery.CodedValue @json['vehicle']['code'], @json['vehicle']['codeSystem']
|
229
|
+
|
230
|
+
###*
|
231
|
+
@returns {CodedValue}
|
232
|
+
###
|
233
|
+
reaction: -> new hQuery.CodedValue @json['reaction']['code'], @json['reaction']['codeSystem']
|
234
|
+
|
235
|
+
###*
|
236
|
+
@returns {CodedValue}
|
237
|
+
###
|
238
|
+
deliveryMethod: -> new hQuery.CodedValue @json['deliveryMethod']['code'], @json['deliveryMethod']['codeSystem']
|
239
|
+
|
240
|
+
###*
|
241
|
+
@returns {hQuery.MedicationInformation}
|
242
|
+
###
|
243
|
+
medicationInformation: -> new hQuery.MedicationInformation @json
|
244
|
+
|
245
|
+
###*
|
246
|
+
@returns {hQuery.TypeOfMedication} Indicates whether this is an over the counter or prescription medication
|
247
|
+
###
|
248
|
+
typeOfMedication: -> new hQuery.TypeOfMedication @json['typeOfMedication']['code'], @json['typeOfMedication']['codeSystem']
|
249
|
+
|
250
|
+
###*
|
251
|
+
Values conform to value set 2.16.840.1.113883.1.11.20.7 - Medication Status
|
252
|
+
Values may be: On Hold, No Longer Active, Active, Prior History
|
253
|
+
@returns {hQuery.StatusOfMedication} Used to indicate the status of the medication.
|
254
|
+
###
|
255
|
+
statusOfMedication: -> new hQuery.StatusOfMedication @json['statusOfMedication']['code'], @json['statusOfMedication']['codeSystem']
|
256
|
+
|
257
|
+
###*
|
258
|
+
@returns {String} free text instructions to the patient
|
259
|
+
###
|
260
|
+
patientInstructions: -> @json['patientInstructions']
|
261
|
+
|
262
|
+
###*
|
263
|
+
The duration over which this medication has been active. For example, 5 days.
|
264
|
+
@returns {Hash} with two keys: unit and scalar
|
265
|
+
###
|
266
|
+
cumulativeMedicationDuration: -> @json['cumulativeMedicationDuration']
|
267
|
+
|
268
|
+
###*
|
269
|
+
@returns {Array} an array of {@link FulFillment} objects
|
270
|
+
###
|
271
|
+
fulfillmentHistory: ->
|
272
|
+
for order in @json['fulfillmentHistory']
|
273
|
+
new hQuery.Fulfillment order
|
274
|
+
|
275
|
+
###*
|
276
|
+
@returns {Array} an array of {@link OrderInformation} objects
|
277
|
+
###
|
278
|
+
orderInformation: ->
|
279
|
+
for order in @json['orderInformation']
|
280
|
+
new hQuery.OrderInformation order
|