hqmf2js 1.2.1 → 1.3.0
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- checksums.yaml +15 -0
- data/.travis.yml +2 -5
- data/Gemfile +6 -4
- data/Gemfile.lock +83 -86
- data/Rakefile +9 -5
- data/app/assets/javascripts/hqmf_util.js.coffee +98 -23
- data/app/assets/javascripts/logging_utils.js.coffee +25 -16
- data/app/assets/javascripts/patient_api_extension.js.coffee +85 -0
- data/app/assets/javascripts/specifics.js.coffee +60 -14
- data/hqmf2js.gemspec +8 -8
- data/lib/assets/javascripts/libraries/map_reduce_utils.js +130 -0
- data/lib/generator/characteristic.js.erb +28 -17
- data/lib/generator/codes_to_json.rb +5 -5
- data/lib/generator/data_criteria.js.erb +5 -5
- data/lib/generator/execution.rb +144 -0
- data/lib/generator/js.rb +46 -21
- data/lib/generator/observation_criteria.js.erb +1 -1
- data/lib/generator/patient_data.js.erb +22 -19
- data/lib/generator/population_criteria.js.erb +6 -1
- data/lib/generator/precondition.js.erb +5 -7
- data/lib/hqmf2js.rb +1 -0
- data/test/fixtures/codes/codes.json +54 -0
- data/test/fixtures/json/0495.json +1014 -0
- data/test/fixtures/json/59New.json +148 -0
- data/test/fixtures/json/data_criteria/specific_occurrence.json +27 -0
- data/test/fixtures/json/data_criteria/temporals_with_anynonnull.json +27 -0
- data/test/fixtures/patients/larry_vanderman.json +4 -4
- data/test/simplecov.rb +19 -0
- data/test/test_helper.rb +1 -1
- data/test/unit/cmd_test.rb +92 -0
- data/test/unit/codes_to_json_test.rb +32 -0
- data/test/unit/erb_context_test.rb +64 -0
- data/test/unit/hqmf_from_json_javascript_test.rb +37 -2
- data/test/unit/hqmf_javascript_test.rb +18 -0
- data/test/unit/js_object_test.rb +27 -0
- data/test/unit/library_function_test.rb +22 -21
- data/test/unit/specifics_test.rb +7 -2
- metadata +16 -121
- data/lib/tasks/cover_me.rake +0 -8
data/test/unit/specifics_test.rb
CHANGED
@@ -231,8 +231,11 @@ class SpecificsTest < Test::Unit::TestCase
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|
231
231
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var row1 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':1},'OccurrenceBEncounter':{'id':20}});
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232
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var row2 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':2},'OccurrenceBEncounter':{'id':20}});
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var row3 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':3},'OccurrenceBEncounter':{'id':30}});
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234
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+
var row4 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':1},'OccurrenceBEncounter':'*'});
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+
var row5 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':2},'OccurrenceBEncounter':'*'});
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236
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+
var row6 = new Row('OccurrenceAEncounter',{'OccurrenceAEncounter':{'id':3},'OccurrenceBEncounter':'*'});
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-
var specific = new hqmf.SpecificOccurrence([row1,row2,row3]);
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+
var specific = new hqmf.SpecificOccurrence([row1,row2,row3,row4,row5,row6]);
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specific.addIdentityRow();
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var pop = new Boolean(true);
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@@ -252,7 +255,9 @@ class SpecificsTest < Test::Unit::TestCase
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252
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@context.eval('hqmf.SpecificsManager.validate(pop)').must_equal true
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253
256
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@context.eval('hqmf.SpecificsManager.countUnique(["OccurrenceAEncounter"], pop)').must_equal 3
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@context.eval('hqmf.SpecificsManager.countUnique(["OccurrenceBEncounter"], pop)').must_equal 2
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255
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-
|
258
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+
# this should be 3 and not 5 because we are doing a multiple encounter episode check. The OccurrenceB rows should be dropped since
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+
# we cannot have multiple values defined on a single row for a multi encounter episode check for unique.
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+
@context.eval('hqmf.SpecificsManager.countUnique(["OccurrenceAEncounter", "OccurrenceBEncounter"], pop)').must_equal 3
|
256
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@context.eval('hqmf.SpecificsManager.countUnique(null, pop)').must_equal 1
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end
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metadata
CHANGED
@@ -1,8 +1,7 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
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name: hqmf2js
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3
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version: !ruby/object:Gem::Version
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-
version: 1.
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-
prerelease:
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+
version: 1.3.0
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5
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platform: ruby
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6
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authors:
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8
7
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- Marc Hadley
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@@ -11,120 +10,8 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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date:
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-
dependencies:
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-
- !ruby/object:Gem::Dependency
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name: nokogiri
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-
requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 1.5.5
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type: :runtime
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prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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version: 1.5.5
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-
- !ruby/object:Gem::Dependency
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name: tilt
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 1.3.3
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-
type: :runtime
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-
prerelease: false
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-
version_requirements: !ruby/object:Gem::Requirement
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-
none: false
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-
requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 1.3.3
|
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-
- !ruby/object:Gem::Dependency
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-
name: coffee-script
|
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requirement: !ruby/object:Gem::Requirement
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none: false
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-
requirements:
|
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 2.2.0
|
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-
type: :runtime
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-
prerelease: false
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-
version_requirements: !ruby/object:Gem::Requirement
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-
none: false
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-
requirements:
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-
- - ~>
|
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-
- !ruby/object:Gem::Version
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-
version: 2.2.0
|
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-
- !ruby/object:Gem::Dependency
|
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-
name: sprockets
|
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-
requirement: !ruby/object:Gem::Requirement
|
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-
none: false
|
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-
requirements:
|
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-
- - ~>
|
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-
- !ruby/object:Gem::Version
|
71
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-
version: 2.2.2
|
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-
type: :runtime
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-
prerelease: false
|
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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version: 2.2.2
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-
- !ruby/object:Gem::Dependency
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-
name: awesome_print
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requirement: !ruby/object:Gem::Requirement
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none: false
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requirements:
|
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 1.1.0
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-
type: :development
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-
prerelease: false
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-
version_requirements: !ruby/object:Gem::Requirement
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-
none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 1.1.0
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-
- !ruby/object:Gem::Dependency
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97
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-
name: health-data-standards
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-
requirement: !ruby/object:Gem::Requirement
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-
none: false
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-
requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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103
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-
version: 3.1.1
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type: :runtime
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-
prerelease: false
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version_requirements: !ruby/object:Gem::Requirement
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none: false
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requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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-
version: 3.1.1
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-
- !ruby/object:Gem::Dependency
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-
name: hquery-patient-api
|
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requirement: !ruby/object:Gem::Requirement
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none: false
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-
requirements:
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-
- - ~>
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-
- !ruby/object:Gem::Version
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119
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-
version: 1.0.2
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-
type: :runtime
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-
prerelease: false
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-
version_requirements: !ruby/object:Gem::Requirement
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none: false
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-
requirements:
|
125
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-
- - ~>
|
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-
- !ruby/object:Gem::Version
|
127
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-
version: 1.0.2
|
13
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+
date: 2014-03-25 00:00:00.000000000 Z
|
14
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+
dependencies: []
|
128
15
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description: A library for converting HQMF files to executable JavaScript suitable
|
129
16
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for use with the hQuery Gateway
|
130
17
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email: hquery-talk@googlegroups.com
|
@@ -149,12 +36,14 @@ files:
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149
36
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- bin/hqmf2js.rb
|
150
37
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- config/warble.rb
|
151
38
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- hqmf2js.gemspec
|
39
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+
- lib/assets/javascripts/libraries/map_reduce_utils.js
|
152
40
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- lib/config/codes.xml
|
153
41
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- lib/generator/characteristic.js.erb
|
154
42
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- lib/generator/codes_to_json.rb
|
155
43
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- lib/generator/converter.rb
|
156
44
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- lib/generator/data_criteria.js.erb
|
157
45
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- lib/generator/derived_data.js.erb
|
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+
- lib/generator/execution.rb
|
158
47
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- lib/generator/js.rb
|
159
48
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- lib/generator/measure_period.js.erb
|
160
49
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- lib/generator/observation_criteria.js.erb
|
@@ -166,8 +55,8 @@ files:
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- lib/tasks/codes.rake
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- lib/tasks/coffee.rake
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- lib/tasks/convert.rake
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-
- lib/tasks/cover_me.rake
|
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58
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- test/fixtures/NQF59New.xml
|
59
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+
- test/fixtures/codes/codes.json
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- test/fixtures/codes/codes.xls
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- test/fixtures/codes/codes.xml
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- test/fixtures/i2b2.xml
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@@ -182,40 +71,46 @@ files:
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- test/fixtures/json/0043.json
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72
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- test/fixtures/json/0043_hqmf1.json
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- test/fixtures/json/0043_hqmf2.json
|
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+
- test/fixtures/json/0495.json
|
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75
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- test/fixtures/json/59New.json
|
76
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+
- test/fixtures/json/data_criteria/specific_occurrence.json
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77
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+
- test/fixtures/json/data_criteria/temporals_with_anynonnull.json
|
186
78
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- test/fixtures/patients/francis_drake.json
|
187
79
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- test/fixtures/patients/larry_vanderman.json
|
80
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+
- test/simplecov.rb
|
188
81
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- test/test_helper.rb
|
82
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+
- test/unit/cmd_test.rb
|
189
83
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- test/unit/codes_to_json_test.rb
|
190
84
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- test/unit/custom_calculations_test.rb
|
191
85
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- test/unit/effective_date_test.rb
|
86
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+
- test/unit/erb_context_test.rb
|
192
87
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- test/unit/hqmf_from_json_javascript_test.rb
|
193
88
|
- test/unit/hqmf_javascript_test.rb
|
89
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+
- test/unit/js_object_test.rb
|
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90
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- test/unit/library_function_test.rb
|
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- test/unit/specifics_test.rb
|
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homepage: http://github.com/hquery/hqmf2js
|
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licenses: []
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+
metadata: {}
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95
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post_install_message:
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rdoc_options: []
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require_paths:
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98
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- lib
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required_ruby_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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101
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- - ! '>='
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- !ruby/object:Gem::Version
|
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version: '0'
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
|
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requirements:
|
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- - ! '>='
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- !ruby/object:Gem::Version
|
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version: '0'
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requirements: []
|
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rubyforge_project:
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-
rubygems_version:
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+
rubygems_version: 2.2.2
|
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signing_key:
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-
specification_version:
|
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+
specification_version: 4
|
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summary: A library for converting HQMF files to JavaScript
|
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test_files: []
|
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has_rdoc:
|