hnswlib 0.6.2 → 0.7.0
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/CHANGELOG.md +6 -0
- data/ext/hnswlib/hnswlibext.cpp +1 -1
- data/ext/hnswlib/hnswlibext.hpp +194 -62
- data/ext/hnswlib/src/bruteforce.h +142 -131
- data/ext/hnswlib/src/hnswalg.h +1028 -964
- data/ext/hnswlib/src/hnswlib.h +74 -66
- data/ext/hnswlib/src/space_ip.h +299 -299
- data/ext/hnswlib/src/space_l2.h +268 -273
- data/ext/hnswlib/src/visited_list_pool.h +54 -55
- data/lib/hnswlib/version.rb +2 -2
- data/lib/hnswlib.rb +17 -10
- data/sig/hnswlib.rbs +6 -6
- metadata +3 -3
data/ext/hnswlib/src/hnswalg.h
CHANGED
@@ -10,1199 +10,1263 @@
|
|
10
10
|
#include <list>
|
11
11
|
|
12
12
|
namespace hnswlib {
|
13
|
-
|
14
|
-
|
15
|
-
|
16
|
-
|
17
|
-
|
18
|
-
|
19
|
-
|
20
|
-
|
21
|
-
|
22
|
-
|
13
|
+
typedef unsigned int tableint;
|
14
|
+
typedef unsigned int linklistsizeint;
|
15
|
+
|
16
|
+
template<typename dist_t>
|
17
|
+
class HierarchicalNSW : public AlgorithmInterface<dist_t> {
|
18
|
+
public:
|
19
|
+
static const tableint MAX_LABEL_OPERATION_LOCKS = 65536;
|
20
|
+
static const unsigned char DELETE_MARK = 0x01;
|
21
|
+
|
22
|
+
size_t max_elements_{0};
|
23
|
+
mutable std::atomic<size_t> cur_element_count{0}; // current number of elements
|
24
|
+
size_t size_data_per_element_{0};
|
25
|
+
size_t size_links_per_element_{0};
|
26
|
+
mutable std::atomic<size_t> num_deleted_{0}; // number of deleted elements
|
27
|
+
size_t M_{0};
|
28
|
+
size_t maxM_{0};
|
29
|
+
size_t maxM0_{0};
|
30
|
+
size_t ef_construction_{0};
|
31
|
+
size_t ef_{ 0 };
|
32
|
+
|
33
|
+
double mult_{0.0}, revSize_{0.0};
|
34
|
+
int maxlevel_{0};
|
35
|
+
|
36
|
+
VisitedListPool *visited_list_pool_{nullptr};
|
37
|
+
|
38
|
+
// Locks operations with element by label value
|
39
|
+
mutable std::vector<std::mutex> label_op_locks_;
|
40
|
+
|
41
|
+
std::mutex global;
|
42
|
+
std::vector<std::mutex> link_list_locks_;
|
43
|
+
|
44
|
+
tableint enterpoint_node_{0};
|
45
|
+
|
46
|
+
size_t size_links_level0_{0};
|
47
|
+
size_t offsetData_{0}, offsetLevel0_{0}, label_offset_{ 0 };
|
48
|
+
|
49
|
+
char *data_level0_memory_{nullptr};
|
50
|
+
char **linkLists_{nullptr};
|
51
|
+
std::vector<int> element_levels_; // keeps level of each element
|
52
|
+
|
53
|
+
size_t data_size_{0};
|
54
|
+
|
55
|
+
DISTFUNC<dist_t> fstdistfunc_;
|
56
|
+
void *dist_func_param_{nullptr};
|
57
|
+
|
58
|
+
mutable std::mutex label_lookup_lock; // lock for label_lookup_
|
59
|
+
std::unordered_map<labeltype, tableint> label_lookup_;
|
60
|
+
|
61
|
+
std::default_random_engine level_generator_;
|
62
|
+
std::default_random_engine update_probability_generator_;
|
63
|
+
|
64
|
+
mutable std::atomic<long> metric_distance_computations{0};
|
65
|
+
mutable std::atomic<long> metric_hops{0};
|
66
|
+
|
67
|
+
bool allow_replace_deleted_ = false; // flag to replace deleted elements (marked as deleted) during insertions
|
68
|
+
|
69
|
+
std::mutex deleted_elements_lock; // lock for deleted_elements
|
70
|
+
std::unordered_set<tableint> deleted_elements; // contains internal ids of deleted elements
|
71
|
+
|
72
|
+
HierarchicalNSW() { }
|
73
|
+
|
74
|
+
HierarchicalNSW(SpaceInterface<dist_t> *s) {
|
75
|
+
}
|
76
|
+
|
77
|
+
|
78
|
+
HierarchicalNSW(
|
79
|
+
SpaceInterface<dist_t> *s,
|
80
|
+
const std::string &location,
|
81
|
+
bool nmslib = false,
|
82
|
+
size_t max_elements = 0,
|
83
|
+
bool allow_replace_deleted = false)
|
84
|
+
: allow_replace_deleted_(allow_replace_deleted) {
|
85
|
+
loadIndex(location, s, max_elements);
|
86
|
+
}
|
87
|
+
|
88
|
+
|
89
|
+
HierarchicalNSW(
|
90
|
+
SpaceInterface<dist_t> *s,
|
91
|
+
size_t max_elements,
|
92
|
+
size_t M = 16,
|
93
|
+
size_t ef_construction = 200,
|
94
|
+
size_t random_seed = 100,
|
95
|
+
bool allow_replace_deleted = false)
|
96
|
+
: link_list_locks_(max_elements),
|
97
|
+
label_op_locks_(MAX_LABEL_OPERATION_LOCKS),
|
98
|
+
element_levels_(max_elements),
|
99
|
+
allow_replace_deleted_(allow_replace_deleted) {
|
100
|
+
max_elements_ = max_elements;
|
101
|
+
num_deleted_ = 0;
|
102
|
+
data_size_ = s->get_data_size();
|
103
|
+
fstdistfunc_ = s->get_dist_func();
|
104
|
+
dist_func_param_ = s->get_dist_func_param();
|
105
|
+
M_ = M;
|
106
|
+
maxM_ = M_;
|
107
|
+
maxM0_ = M_ * 2;
|
108
|
+
ef_construction_ = std::max(ef_construction, M_);
|
109
|
+
ef_ = 10;
|
110
|
+
|
111
|
+
level_generator_.seed(random_seed);
|
112
|
+
update_probability_generator_.seed(random_seed + 1);
|
113
|
+
|
114
|
+
size_links_level0_ = maxM0_ * sizeof(tableint) + sizeof(linklistsizeint);
|
115
|
+
size_data_per_element_ = size_links_level0_ + data_size_ + sizeof(labeltype);
|
116
|
+
offsetData_ = size_links_level0_;
|
117
|
+
label_offset_ = size_links_level0_ + data_size_;
|
118
|
+
offsetLevel0_ = 0;
|
119
|
+
|
120
|
+
data_level0_memory_ = (char *) malloc(max_elements_ * size_data_per_element_);
|
121
|
+
if (data_level0_memory_ == nullptr)
|
122
|
+
throw std::runtime_error("Not enough memory");
|
123
|
+
|
124
|
+
cur_element_count = 0;
|
125
|
+
|
126
|
+
visited_list_pool_ = new VisitedListPool(1, max_elements);
|
23
127
|
|
24
|
-
|
25
|
-
|
26
|
-
|
128
|
+
// initializations for special treatment of the first node
|
129
|
+
enterpoint_node_ = -1;
|
130
|
+
maxlevel_ = -1;
|
131
|
+
|
132
|
+
linkLists_ = (char **) malloc(sizeof(void *) * max_elements_);
|
133
|
+
if (linkLists_ == nullptr)
|
134
|
+
throw std::runtime_error("Not enough memory: HierarchicalNSW failed to allocate linklists");
|
135
|
+
size_links_per_element_ = maxM_ * sizeof(tableint) + sizeof(linklistsizeint);
|
136
|
+
mult_ = 1 / log(1.0 * M_);
|
137
|
+
revSize_ = 1.0 / mult_;
|
138
|
+
}
|
27
139
|
|
28
|
-
|
29
|
-
|
30
|
-
|
31
|
-
|
32
|
-
|
33
|
-
|
34
|
-
fstdistfunc_ = s->get_dist_func();
|
35
|
-
dist_func_param_ = s->get_dist_func_param();
|
36
|
-
M_ = M;
|
37
|
-
maxM_ = M_;
|
38
|
-
maxM0_ = M_ * 2;
|
39
|
-
ef_construction_ = std::max(ef_construction,M_);
|
40
|
-
ef_ = 10;
|
41
|
-
|
42
|
-
level_generator_.seed(random_seed);
|
43
|
-
update_probability_generator_.seed(random_seed + 1);
|
44
|
-
|
45
|
-
size_links_level0_ = maxM0_ * sizeof(tableint) + sizeof(linklistsizeint);
|
46
|
-
size_data_per_element_ = size_links_level0_ + data_size_ + sizeof(labeltype);
|
47
|
-
offsetData_ = size_links_level0_;
|
48
|
-
label_offset_ = size_links_level0_ + data_size_;
|
49
|
-
offsetLevel0_ = 0;
|
50
|
-
|
51
|
-
data_level0_memory_ = (char *) malloc(max_elements_ * size_data_per_element_);
|
52
|
-
if (data_level0_memory_ == nullptr)
|
53
|
-
throw std::runtime_error("Not enough memory");
|
54
|
-
|
55
|
-
cur_element_count = 0;
|
56
|
-
|
57
|
-
visited_list_pool_ = new VisitedListPool(1, max_elements);
|
58
|
-
|
59
|
-
//initializations for special treatment of the first node
|
60
|
-
enterpoint_node_ = -1;
|
61
|
-
maxlevel_ = -1;
|
62
|
-
|
63
|
-
linkLists_ = (char **) malloc(sizeof(void *) * max_elements_);
|
64
|
-
if (linkLists_ == nullptr)
|
65
|
-
throw std::runtime_error("Not enough memory: HierarchicalNSW failed to allocate linklists");
|
66
|
-
size_links_per_element_ = maxM_ * sizeof(tableint) + sizeof(linklistsizeint);
|
67
|
-
mult_ = 1 / log(1.0 * M_);
|
68
|
-
revSize_ = 1.0 / mult_;
|
140
|
+
|
141
|
+
~HierarchicalNSW() {
|
142
|
+
free(data_level0_memory_);
|
143
|
+
for (tableint i = 0; i < cur_element_count; i++) {
|
144
|
+
if (element_levels_[i] > 0)
|
145
|
+
free(linkLists_[i]);
|
69
146
|
}
|
147
|
+
free(linkLists_);
|
148
|
+
delete visited_list_pool_;
|
149
|
+
}
|
70
150
|
|
71
|
-
|
72
|
-
|
73
|
-
|
74
|
-
|
75
|
-
|
76
|
-
};
|
77
|
-
|
78
|
-
~HierarchicalNSW() {
|
79
|
-
if (data_level0_memory_) free(data_level0_memory_);
|
80
|
-
if (linkLists_) {
|
81
|
-
for (tableint i = 0; i < cur_element_count; i++) {
|
82
|
-
if (element_levels_[i] > 0)
|
83
|
-
if (linkLists_[i]) free(linkLists_[i]);
|
84
|
-
}
|
85
|
-
free(linkLists_);
|
86
|
-
}
|
87
|
-
if (visited_list_pool_) delete visited_list_pool_;
|
151
|
+
|
152
|
+
struct CompareByFirst {
|
153
|
+
constexpr bool operator()(std::pair<dist_t, tableint> const& a,
|
154
|
+
std::pair<dist_t, tableint> const& b) const noexcept {
|
155
|
+
return a.first < b.first;
|
88
156
|
}
|
157
|
+
};
|
89
158
|
|
90
|
-
size_t max_elements_;
|
91
|
-
size_t cur_element_count;
|
92
|
-
size_t size_data_per_element_;
|
93
|
-
size_t size_links_per_element_;
|
94
|
-
size_t num_deleted_;
|
95
159
|
|
96
|
-
|
97
|
-
|
98
|
-
|
99
|
-
size_t ef_construction_;
|
160
|
+
void setEf(size_t ef) {
|
161
|
+
ef_ = ef;
|
162
|
+
}
|
100
163
|
|
101
|
-
double mult_, revSize_;
|
102
|
-
int maxlevel_;
|
103
164
|
|
165
|
+
inline std::mutex& getLabelOpMutex(labeltype label) const {
|
166
|
+
// calculate hash
|
167
|
+
size_t lock_id = label & (MAX_LABEL_OPERATION_LOCKS - 1);
|
168
|
+
return label_op_locks_[lock_id];
|
169
|
+
}
|
104
170
|
|
105
|
-
VisitedListPool *visited_list_pool_;
|
106
|
-
std::mutex cur_element_count_guard_;
|
107
171
|
|
108
|
-
|
172
|
+
inline labeltype getExternalLabel(tableint internal_id) const {
|
173
|
+
labeltype return_label;
|
174
|
+
memcpy(&return_label, (data_level0_memory_ + internal_id * size_data_per_element_ + label_offset_), sizeof(labeltype));
|
175
|
+
return return_label;
|
176
|
+
}
|
109
177
|
|
110
|
-
// Locks to prevent race condition during update/insert of an element at same time.
|
111
|
-
// Note: Locks for additions can also be used to prevent this race condition if the querying of KNN is not exposed along with update/inserts i.e multithread insert/update/query in parallel.
|
112
|
-
std::vector<std::mutex> link_list_update_locks_;
|
113
|
-
tableint enterpoint_node_;
|
114
178
|
|
115
|
-
|
116
|
-
|
179
|
+
inline void setExternalLabel(tableint internal_id, labeltype label) const {
|
180
|
+
memcpy((data_level0_memory_ + internal_id * size_data_per_element_ + label_offset_), &label, sizeof(labeltype));
|
181
|
+
}
|
117
182
|
|
118
|
-
char *data_level0_memory_;
|
119
|
-
char **linkLists_;
|
120
|
-
std::vector<int> element_levels_;
|
121
183
|
|
122
|
-
|
184
|
+
inline labeltype *getExternalLabeLp(tableint internal_id) const {
|
185
|
+
return (labeltype *) (data_level0_memory_ + internal_id * size_data_per_element_ + label_offset_);
|
186
|
+
}
|
123
187
|
|
124
|
-
size_t label_offset_;
|
125
|
-
DISTFUNC<dist_t> fstdistfunc_;
|
126
|
-
void *dist_func_param_;
|
127
|
-
std::unordered_map<labeltype, tableint> label_lookup_;
|
128
188
|
|
129
|
-
|
130
|
-
|
189
|
+
inline char *getDataByInternalId(tableint internal_id) const {
|
190
|
+
return (data_level0_memory_ + internal_id * size_data_per_element_ + offsetData_);
|
191
|
+
}
|
131
192
|
|
132
|
-
inline labeltype getExternalLabel(tableint internal_id) const {
|
133
|
-
labeltype return_label;
|
134
|
-
memcpy(&return_label,(data_level0_memory_ + internal_id * size_data_per_element_ + label_offset_), sizeof(labeltype));
|
135
|
-
return return_label;
|
136
|
-
}
|
137
193
|
|
138
|
-
|
139
|
-
|
140
|
-
|
194
|
+
int getRandomLevel(double reverse_size) {
|
195
|
+
std::uniform_real_distribution<double> distribution(0.0, 1.0);
|
196
|
+
double r = -log(distribution(level_generator_)) * reverse_size;
|
197
|
+
return (int) r;
|
198
|
+
}
|
141
199
|
|
142
|
-
|
143
|
-
|
144
|
-
|
200
|
+
size_t getMaxElements() {
|
201
|
+
return max_elements_;
|
202
|
+
}
|
145
203
|
|
146
|
-
|
147
|
-
|
148
|
-
|
204
|
+
size_t getCurrentElementCount() {
|
205
|
+
return cur_element_count;
|
206
|
+
}
|
149
207
|
|
150
|
-
|
151
|
-
|
152
|
-
|
153
|
-
return (int) r;
|
154
|
-
}
|
208
|
+
size_t getDeletedCount() {
|
209
|
+
return num_deleted_;
|
210
|
+
}
|
155
211
|
|
212
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst>
|
213
|
+
searchBaseLayer(tableint ep_id, const void *data_point, int layer) {
|
214
|
+
VisitedList *vl = visited_list_pool_->getFreeVisitedList();
|
215
|
+
vl_type *visited_array = vl->mass;
|
216
|
+
vl_type visited_array_tag = vl->curV;
|
156
217
|
|
157
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst>
|
158
|
-
|
159
|
-
VisitedList *vl = visited_list_pool_->getFreeVisitedList();
|
160
|
-
vl_type *visited_array = vl->mass;
|
161
|
-
vl_type visited_array_tag = vl->curV;
|
218
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> top_candidates;
|
219
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> candidateSet;
|
162
220
|
|
163
|
-
|
164
|
-
|
221
|
+
dist_t lowerBound;
|
222
|
+
if (!isMarkedDeleted(ep_id)) {
|
223
|
+
dist_t dist = fstdistfunc_(data_point, getDataByInternalId(ep_id), dist_func_param_);
|
224
|
+
top_candidates.emplace(dist, ep_id);
|
225
|
+
lowerBound = dist;
|
226
|
+
candidateSet.emplace(-dist, ep_id);
|
227
|
+
} else {
|
228
|
+
lowerBound = std::numeric_limits<dist_t>::max();
|
229
|
+
candidateSet.emplace(-lowerBound, ep_id);
|
230
|
+
}
|
231
|
+
visited_array[ep_id] = visited_array_tag;
|
165
232
|
|
166
|
-
|
167
|
-
|
168
|
-
|
169
|
-
|
170
|
-
lowerBound = dist;
|
171
|
-
candidateSet.emplace(-dist, ep_id);
|
172
|
-
} else {
|
173
|
-
lowerBound = std::numeric_limits<dist_t>::max();
|
174
|
-
candidateSet.emplace(-lowerBound, ep_id);
|
233
|
+
while (!candidateSet.empty()) {
|
234
|
+
std::pair<dist_t, tableint> curr_el_pair = candidateSet.top();
|
235
|
+
if ((-curr_el_pair.first) > lowerBound && top_candidates.size() == ef_construction_) {
|
236
|
+
break;
|
175
237
|
}
|
176
|
-
|
177
|
-
|
178
|
-
while (!candidateSet.empty()) {
|
179
|
-
std::pair<dist_t, tableint> curr_el_pair = candidateSet.top();
|
180
|
-
if ((-curr_el_pair.first) > lowerBound && top_candidates.size() == ef_construction_) {
|
181
|
-
break;
|
182
|
-
}
|
183
|
-
candidateSet.pop();
|
238
|
+
candidateSet.pop();
|
184
239
|
|
185
|
-
|
240
|
+
tableint curNodeNum = curr_el_pair.second;
|
186
241
|
|
187
|
-
|
242
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[curNodeNum]);
|
188
243
|
|
189
|
-
|
190
|
-
|
191
|
-
|
192
|
-
|
193
|
-
|
244
|
+
int *data; // = (int *)(linkList0_ + curNodeNum * size_links_per_element0_);
|
245
|
+
if (layer == 0) {
|
246
|
+
data = (int*)get_linklist0(curNodeNum);
|
247
|
+
} else {
|
248
|
+
data = (int*)get_linklist(curNodeNum, layer);
|
194
249
|
// data = (int *) (linkLists_[curNodeNum] + (layer - 1) * size_links_per_element_);
|
195
|
-
|
196
|
-
|
197
|
-
|
250
|
+
}
|
251
|
+
size_t size = getListCount((linklistsizeint*)data);
|
252
|
+
tableint *datal = (tableint *) (data + 1);
|
198
253
|
#ifdef USE_SSE
|
199
|
-
|
200
|
-
|
201
|
-
|
202
|
-
|
254
|
+
_mm_prefetch((char *) (visited_array + *(data + 1)), _MM_HINT_T0);
|
255
|
+
_mm_prefetch((char *) (visited_array + *(data + 1) + 64), _MM_HINT_T0);
|
256
|
+
_mm_prefetch(getDataByInternalId(*datal), _MM_HINT_T0);
|
257
|
+
_mm_prefetch(getDataByInternalId(*(datal + 1)), _MM_HINT_T0);
|
203
258
|
#endif
|
204
259
|
|
205
|
-
|
206
|
-
|
260
|
+
for (size_t j = 0; j < size; j++) {
|
261
|
+
tableint candidate_id = *(datal + j);
|
207
262
|
// if (candidate_id == 0) continue;
|
208
263
|
#ifdef USE_SSE
|
209
|
-
|
210
|
-
|
264
|
+
_mm_prefetch((char *) (visited_array + *(datal + j + 1)), _MM_HINT_T0);
|
265
|
+
_mm_prefetch(getDataByInternalId(*(datal + j + 1)), _MM_HINT_T0);
|
211
266
|
#endif
|
212
|
-
|
213
|
-
|
214
|
-
|
267
|
+
if (visited_array[candidate_id] == visited_array_tag) continue;
|
268
|
+
visited_array[candidate_id] = visited_array_tag;
|
269
|
+
char *currObj1 = (getDataByInternalId(candidate_id));
|
215
270
|
|
216
|
-
|
217
|
-
|
218
|
-
|
271
|
+
dist_t dist1 = fstdistfunc_(data_point, currObj1, dist_func_param_);
|
272
|
+
if (top_candidates.size() < ef_construction_ || lowerBound > dist1) {
|
273
|
+
candidateSet.emplace(-dist1, candidate_id);
|
219
274
|
#ifdef USE_SSE
|
220
|
-
|
275
|
+
_mm_prefetch(getDataByInternalId(candidateSet.top().second), _MM_HINT_T0);
|
221
276
|
#endif
|
222
277
|
|
223
|
-
|
224
|
-
|
278
|
+
if (!isMarkedDeleted(candidate_id))
|
279
|
+
top_candidates.emplace(dist1, candidate_id);
|
225
280
|
|
226
|
-
|
227
|
-
|
281
|
+
if (top_candidates.size() > ef_construction_)
|
282
|
+
top_candidates.pop();
|
228
283
|
|
229
|
-
|
230
|
-
|
231
|
-
}
|
284
|
+
if (!top_candidates.empty())
|
285
|
+
lowerBound = top_candidates.top().first;
|
232
286
|
}
|
233
287
|
}
|
234
|
-
|
235
|
-
|
236
|
-
|
288
|
+
}
|
289
|
+
visited_list_pool_->releaseVisitedList(vl);
|
290
|
+
|
291
|
+
return top_candidates;
|
292
|
+
}
|
293
|
+
|
294
|
+
|
295
|
+
template <bool has_deletions, bool collect_metrics = false>
|
296
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst>
|
297
|
+
searchBaseLayerST(tableint ep_id, const void *data_point, size_t ef, BaseFilterFunctor* isIdAllowed = nullptr) const {
|
298
|
+
VisitedList *vl = visited_list_pool_->getFreeVisitedList();
|
299
|
+
vl_type *visited_array = vl->mass;
|
300
|
+
vl_type visited_array_tag = vl->curV;
|
301
|
+
|
302
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> top_candidates;
|
303
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> candidate_set;
|
304
|
+
|
305
|
+
dist_t lowerBound;
|
306
|
+
if ((!has_deletions || !isMarkedDeleted(ep_id)) && ((!isIdAllowed) || (*isIdAllowed)(getExternalLabel(ep_id)))) {
|
307
|
+
dist_t dist = fstdistfunc_(data_point, getDataByInternalId(ep_id), dist_func_param_);
|
308
|
+
lowerBound = dist;
|
309
|
+
top_candidates.emplace(dist, ep_id);
|
310
|
+
candidate_set.emplace(-dist, ep_id);
|
311
|
+
} else {
|
312
|
+
lowerBound = std::numeric_limits<dist_t>::max();
|
313
|
+
candidate_set.emplace(-lowerBound, ep_id);
|
237
314
|
}
|
238
315
|
|
239
|
-
|
240
|
-
mutable std::atomic<long> metric_hops;
|
241
|
-
|
242
|
-
template <bool has_deletions, bool collect_metrics=false>
|
243
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst>
|
244
|
-
searchBaseLayerST(tableint ep_id, const void *data_point, size_t ef) const {
|
245
|
-
VisitedList *vl = visited_list_pool_->getFreeVisitedList();
|
246
|
-
vl_type *visited_array = vl->mass;
|
247
|
-
vl_type visited_array_tag = vl->curV;
|
248
|
-
|
249
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> top_candidates;
|
250
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> candidate_set;
|
251
|
-
|
252
|
-
dist_t lowerBound;
|
253
|
-
if (!has_deletions || !isMarkedDeleted(ep_id)) {
|
254
|
-
dist_t dist = fstdistfunc_(data_point, getDataByInternalId(ep_id), dist_func_param_);
|
255
|
-
lowerBound = dist;
|
256
|
-
top_candidates.emplace(dist, ep_id);
|
257
|
-
candidate_set.emplace(-dist, ep_id);
|
258
|
-
} else {
|
259
|
-
lowerBound = std::numeric_limits<dist_t>::max();
|
260
|
-
candidate_set.emplace(-lowerBound, ep_id);
|
261
|
-
}
|
262
|
-
|
263
|
-
visited_array[ep_id] = visited_array_tag;
|
264
|
-
|
265
|
-
while (!candidate_set.empty()) {
|
316
|
+
visited_array[ep_id] = visited_array_tag;
|
266
317
|
|
267
|
-
|
318
|
+
while (!candidate_set.empty()) {
|
319
|
+
std::pair<dist_t, tableint> current_node_pair = candidate_set.top();
|
268
320
|
|
269
|
-
|
270
|
-
|
271
|
-
|
272
|
-
|
321
|
+
if ((-current_node_pair.first) > lowerBound &&
|
322
|
+
(top_candidates.size() == ef || (!isIdAllowed && !has_deletions))) {
|
323
|
+
break;
|
324
|
+
}
|
325
|
+
candidate_set.pop();
|
273
326
|
|
274
|
-
|
275
|
-
|
276
|
-
|
327
|
+
tableint current_node_id = current_node_pair.second;
|
328
|
+
int *data = (int *) get_linklist0(current_node_id);
|
329
|
+
size_t size = getListCount((linklistsizeint*)data);
|
277
330
|
// bool cur_node_deleted = isMarkedDeleted(current_node_id);
|
278
|
-
|
279
|
-
|
280
|
-
|
281
|
-
|
331
|
+
if (collect_metrics) {
|
332
|
+
metric_hops++;
|
333
|
+
metric_distance_computations+=size;
|
334
|
+
}
|
282
335
|
|
283
336
|
#ifdef USE_SSE
|
284
|
-
|
285
|
-
|
286
|
-
|
287
|
-
|
337
|
+
_mm_prefetch((char *) (visited_array + *(data + 1)), _MM_HINT_T0);
|
338
|
+
_mm_prefetch((char *) (visited_array + *(data + 1) + 64), _MM_HINT_T0);
|
339
|
+
_mm_prefetch(data_level0_memory_ + (*(data + 1)) * size_data_per_element_ + offsetData_, _MM_HINT_T0);
|
340
|
+
_mm_prefetch((char *) (data + 2), _MM_HINT_T0);
|
288
341
|
#endif
|
289
342
|
|
290
|
-
|
291
|
-
|
343
|
+
for (size_t j = 1; j <= size; j++) {
|
344
|
+
int candidate_id = *(data + j);
|
292
345
|
// if (candidate_id == 0) continue;
|
293
346
|
#ifdef USE_SSE
|
294
|
-
|
295
|
-
|
296
|
-
|
347
|
+
_mm_prefetch((char *) (visited_array + *(data + j + 1)), _MM_HINT_T0);
|
348
|
+
_mm_prefetch(data_level0_memory_ + (*(data + j + 1)) * size_data_per_element_ + offsetData_,
|
349
|
+
_MM_HINT_T0); ////////////
|
297
350
|
#endif
|
298
|
-
|
299
|
-
|
300
|
-
visited_array[candidate_id] = visited_array_tag;
|
351
|
+
if (!(visited_array[candidate_id] == visited_array_tag)) {
|
352
|
+
visited_array[candidate_id] = visited_array_tag;
|
301
353
|
|
302
|
-
|
303
|
-
|
354
|
+
char *currObj1 = (getDataByInternalId(candidate_id));
|
355
|
+
dist_t dist = fstdistfunc_(data_point, currObj1, dist_func_param_);
|
304
356
|
|
305
|
-
|
306
|
-
|
357
|
+
if (top_candidates.size() < ef || lowerBound > dist) {
|
358
|
+
candidate_set.emplace(-dist, candidate_id);
|
307
359
|
#ifdef USE_SSE
|
308
|
-
|
309
|
-
|
310
|
-
|
360
|
+
_mm_prefetch(data_level0_memory_ + candidate_set.top().second * size_data_per_element_ +
|
361
|
+
offsetLevel0_, ///////////
|
362
|
+
_MM_HINT_T0); ////////////////////////
|
311
363
|
#endif
|
312
364
|
|
313
|
-
|
314
|
-
|
365
|
+
if ((!has_deletions || !isMarkedDeleted(candidate_id)) && ((!isIdAllowed) || (*isIdAllowed)(getExternalLabel(candidate_id))))
|
366
|
+
top_candidates.emplace(dist, candidate_id);
|
315
367
|
|
316
|
-
|
317
|
-
|
368
|
+
if (top_candidates.size() > ef)
|
369
|
+
top_candidates.pop();
|
318
370
|
|
319
|
-
|
320
|
-
|
321
|
-
}
|
371
|
+
if (!top_candidates.empty())
|
372
|
+
lowerBound = top_candidates.top().first;
|
322
373
|
}
|
323
374
|
}
|
324
375
|
}
|
325
|
-
|
326
|
-
visited_list_pool_->releaseVisitedList(vl);
|
327
|
-
return top_candidates;
|
328
376
|
}
|
329
377
|
|
330
|
-
|
331
|
-
|
332
|
-
|
333
|
-
if (top_candidates.size() < M) {
|
334
|
-
return;
|
335
|
-
}
|
378
|
+
visited_list_pool_->releaseVisitedList(vl);
|
379
|
+
return top_candidates;
|
380
|
+
}
|
336
381
|
|
337
|
-
std::priority_queue<std::pair<dist_t, tableint>> queue_closest;
|
338
|
-
std::vector<std::pair<dist_t, tableint>> return_list;
|
339
|
-
while (top_candidates.size() > 0) {
|
340
|
-
queue_closest.emplace(-top_candidates.top().first, top_candidates.top().second);
|
341
|
-
top_candidates.pop();
|
342
|
-
}
|
343
382
|
|
344
|
-
|
345
|
-
|
383
|
+
void getNeighborsByHeuristic2(
|
384
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> &top_candidates,
|
385
|
+
const size_t M) {
|
386
|
+
if (top_candidates.size() < M) {
|
387
|
+
return;
|
388
|
+
}
|
389
|
+
|
390
|
+
std::priority_queue<std::pair<dist_t, tableint>> queue_closest;
|
391
|
+
std::vector<std::pair<dist_t, tableint>> return_list;
|
392
|
+
while (top_candidates.size() > 0) {
|
393
|
+
queue_closest.emplace(-top_candidates.top().first, top_candidates.top().second);
|
394
|
+
top_candidates.pop();
|
395
|
+
}
|
396
|
+
|
397
|
+
while (queue_closest.size()) {
|
398
|
+
if (return_list.size() >= M)
|
399
|
+
break;
|
400
|
+
std::pair<dist_t, tableint> curent_pair = queue_closest.top();
|
401
|
+
dist_t dist_to_query = -curent_pair.first;
|
402
|
+
queue_closest.pop();
|
403
|
+
bool good = true;
|
404
|
+
|
405
|
+
for (std::pair<dist_t, tableint> second_pair : return_list) {
|
406
|
+
dist_t curdist =
|
407
|
+
fstdistfunc_(getDataByInternalId(second_pair.second),
|
408
|
+
getDataByInternalId(curent_pair.second),
|
409
|
+
dist_func_param_);
|
410
|
+
if (curdist < dist_to_query) {
|
411
|
+
good = false;
|
346
412
|
break;
|
347
|
-
std::pair<dist_t, tableint> curent_pair = queue_closest.top();
|
348
|
-
dist_t dist_to_query = -curent_pair.first;
|
349
|
-
queue_closest.pop();
|
350
|
-
bool good = true;
|
351
|
-
|
352
|
-
for (std::pair<dist_t, tableint> second_pair : return_list) {
|
353
|
-
dist_t curdist =
|
354
|
-
fstdistfunc_(getDataByInternalId(second_pair.second),
|
355
|
-
getDataByInternalId(curent_pair.second),
|
356
|
-
dist_func_param_);;
|
357
|
-
if (curdist < dist_to_query) {
|
358
|
-
good = false;
|
359
|
-
break;
|
360
|
-
}
|
361
|
-
}
|
362
|
-
if (good) {
|
363
|
-
return_list.push_back(curent_pair);
|
364
413
|
}
|
365
414
|
}
|
366
|
-
|
367
|
-
|
368
|
-
top_candidates.emplace(-curent_pair.first, curent_pair.second);
|
415
|
+
if (good) {
|
416
|
+
return_list.push_back(curent_pair);
|
369
417
|
}
|
370
418
|
}
|
371
419
|
|
420
|
+
for (std::pair<dist_t, tableint> curent_pair : return_list) {
|
421
|
+
top_candidates.emplace(-curent_pair.first, curent_pair.second);
|
422
|
+
}
|
423
|
+
}
|
372
424
|
|
373
|
-
linklistsizeint *get_linklist0(tableint internal_id) const {
|
374
|
-
return (linklistsizeint *) (data_level0_memory_ + internal_id * size_data_per_element_ + offsetLevel0_);
|
375
|
-
};
|
376
425
|
|
377
|
-
|
378
|
-
|
379
|
-
|
426
|
+
linklistsizeint *get_linklist0(tableint internal_id) const {
|
427
|
+
return (linklistsizeint *) (data_level0_memory_ + internal_id * size_data_per_element_ + offsetLevel0_);
|
428
|
+
}
|
380
429
|
|
381
|
-
linklistsizeint *get_linklist(tableint internal_id, int level) const {
|
382
|
-
return (linklistsizeint *) (linkLists_[internal_id] + (level - 1) * size_links_per_element_);
|
383
|
-
};
|
384
430
|
|
385
|
-
|
386
|
-
|
387
|
-
|
431
|
+
linklistsizeint *get_linklist0(tableint internal_id, char *data_level0_memory_) const {
|
432
|
+
return (linklistsizeint *) (data_level0_memory_ + internal_id * size_data_per_element_ + offsetLevel0_);
|
433
|
+
}
|
388
434
|
|
389
|
-
tableint mutuallyConnectNewElement(const void *data_point, tableint cur_c,
|
390
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> &top_candidates,
|
391
|
-
int level, bool isUpdate) {
|
392
|
-
size_t Mcurmax = level ? maxM_ : maxM0_;
|
393
|
-
getNeighborsByHeuristic2(top_candidates, M_);
|
394
|
-
if (top_candidates.size() > M_)
|
395
|
-
throw std::runtime_error("Should be not be more than M_ candidates returned by the heuristic");
|
396
435
|
|
397
|
-
|
398
|
-
|
399
|
-
|
400
|
-
selectedNeighbors.push_back(top_candidates.top().second);
|
401
|
-
top_candidates.pop();
|
402
|
-
}
|
436
|
+
linklistsizeint *get_linklist(tableint internal_id, int level) const {
|
437
|
+
return (linklistsizeint *) (linkLists_[internal_id] + (level - 1) * size_links_per_element_);
|
438
|
+
}
|
403
439
|
|
404
|
-
tableint next_closest_entry_point = selectedNeighbors.back();
|
405
440
|
|
406
|
-
|
407
|
-
|
408
|
-
|
409
|
-
ll_cur = get_linklist0(cur_c);
|
410
|
-
else
|
411
|
-
ll_cur = get_linklist(cur_c, level);
|
441
|
+
linklistsizeint *get_linklist_at_level(tableint internal_id, int level) const {
|
442
|
+
return level == 0 ? get_linklist0(internal_id) : get_linklist(internal_id, level);
|
443
|
+
}
|
412
444
|
|
413
|
-
if (*ll_cur && !isUpdate) {
|
414
|
-
throw std::runtime_error("The newly inserted element should have blank link list");
|
415
|
-
}
|
416
|
-
setListCount(ll_cur,selectedNeighbors.size());
|
417
|
-
tableint *data = (tableint *) (ll_cur + 1);
|
418
|
-
for (size_t idx = 0; idx < selectedNeighbors.size(); idx++) {
|
419
|
-
if (data[idx] && !isUpdate)
|
420
|
-
throw std::runtime_error("Possible memory corruption");
|
421
|
-
if (level > element_levels_[selectedNeighbors[idx]])
|
422
|
-
throw std::runtime_error("Trying to make a link on a non-existent level");
|
423
445
|
|
424
|
-
|
446
|
+
tableint mutuallyConnectNewElement(
|
447
|
+
const void *data_point,
|
448
|
+
tableint cur_c,
|
449
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> &top_candidates,
|
450
|
+
int level,
|
451
|
+
bool isUpdate) {
|
452
|
+
size_t Mcurmax = level ? maxM_ : maxM0_;
|
453
|
+
getNeighborsByHeuristic2(top_candidates, M_);
|
454
|
+
if (top_candidates.size() > M_)
|
455
|
+
throw std::runtime_error("Should be not be more than M_ candidates returned by the heuristic");
|
425
456
|
|
426
|
-
|
457
|
+
std::vector<tableint> selectedNeighbors;
|
458
|
+
selectedNeighbors.reserve(M_);
|
459
|
+
while (top_candidates.size() > 0) {
|
460
|
+
selectedNeighbors.push_back(top_candidates.top().second);
|
461
|
+
top_candidates.pop();
|
462
|
+
}
|
463
|
+
|
464
|
+
tableint next_closest_entry_point = selectedNeighbors.back();
|
465
|
+
|
466
|
+
{
|
467
|
+
// lock only during the update
|
468
|
+
// because during the addition the lock for cur_c is already acquired
|
469
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[cur_c], std::defer_lock);
|
470
|
+
if (isUpdate) {
|
471
|
+
lock.lock();
|
427
472
|
}
|
473
|
+
linklistsizeint *ll_cur;
|
474
|
+
if (level == 0)
|
475
|
+
ll_cur = get_linklist0(cur_c);
|
476
|
+
else
|
477
|
+
ll_cur = get_linklist(cur_c, level);
|
428
478
|
|
479
|
+
if (*ll_cur && !isUpdate) {
|
480
|
+
throw std::runtime_error("The newly inserted element should have blank link list");
|
481
|
+
}
|
482
|
+
setListCount(ll_cur, selectedNeighbors.size());
|
483
|
+
tableint *data = (tableint *) (ll_cur + 1);
|
429
484
|
for (size_t idx = 0; idx < selectedNeighbors.size(); idx++) {
|
485
|
+
if (data[idx] && !isUpdate)
|
486
|
+
throw std::runtime_error("Possible memory corruption");
|
487
|
+
if (level > element_levels_[selectedNeighbors[idx]])
|
488
|
+
throw std::runtime_error("Trying to make a link on a non-existent level");
|
430
489
|
|
431
|
-
|
490
|
+
data[idx] = selectedNeighbors[idx];
|
491
|
+
}
|
492
|
+
}
|
432
493
|
|
433
|
-
|
434
|
-
|
435
|
-
ll_other = get_linklist0(selectedNeighbors[idx]);
|
436
|
-
else
|
437
|
-
ll_other = get_linklist(selectedNeighbors[idx], level);
|
494
|
+
for (size_t idx = 0; idx < selectedNeighbors.size(); idx++) {
|
495
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[selectedNeighbors[idx]]);
|
438
496
|
|
439
|
-
|
497
|
+
linklistsizeint *ll_other;
|
498
|
+
if (level == 0)
|
499
|
+
ll_other = get_linklist0(selectedNeighbors[idx]);
|
500
|
+
else
|
501
|
+
ll_other = get_linklist(selectedNeighbors[idx], level);
|
440
502
|
|
441
|
-
|
442
|
-
throw std::runtime_error("Bad value of sz_link_list_other");
|
443
|
-
if (selectedNeighbors[idx] == cur_c)
|
444
|
-
throw std::runtime_error("Trying to connect an element to itself");
|
445
|
-
if (level > element_levels_[selectedNeighbors[idx]])
|
446
|
-
throw std::runtime_error("Trying to make a link on a non-existent level");
|
503
|
+
size_t sz_link_list_other = getListCount(ll_other);
|
447
504
|
|
448
|
-
|
505
|
+
if (sz_link_list_other > Mcurmax)
|
506
|
+
throw std::runtime_error("Bad value of sz_link_list_other");
|
507
|
+
if (selectedNeighbors[idx] == cur_c)
|
508
|
+
throw std::runtime_error("Trying to connect an element to itself");
|
509
|
+
if (level > element_levels_[selectedNeighbors[idx]])
|
510
|
+
throw std::runtime_error("Trying to make a link on a non-existent level");
|
449
511
|
|
450
|
-
|
451
|
-
|
452
|
-
|
453
|
-
|
454
|
-
|
455
|
-
|
456
|
-
|
512
|
+
tableint *data = (tableint *) (ll_other + 1);
|
513
|
+
|
514
|
+
bool is_cur_c_present = false;
|
515
|
+
if (isUpdate) {
|
516
|
+
for (size_t j = 0; j < sz_link_list_other; j++) {
|
517
|
+
if (data[j] == cur_c) {
|
518
|
+
is_cur_c_present = true;
|
519
|
+
break;
|
457
520
|
}
|
458
521
|
}
|
522
|
+
}
|
459
523
|
|
460
|
-
|
461
|
-
|
462
|
-
|
463
|
-
|
464
|
-
|
465
|
-
|
466
|
-
|
467
|
-
|
468
|
-
|
469
|
-
|
470
|
-
|
471
|
-
|
472
|
-
|
473
|
-
for (size_t j = 0; j < sz_link_list_other; j++) {
|
474
|
-
candidates.emplace(
|
475
|
-
fstdistfunc_(getDataByInternalId(data[j]), getDataByInternalId(selectedNeighbors[idx]),
|
476
|
-
dist_func_param_), data[j]);
|
477
|
-
}
|
524
|
+
// If cur_c is already present in the neighboring connections of `selectedNeighbors[idx]` then no need to modify any connections or run the heuristics.
|
525
|
+
if (!is_cur_c_present) {
|
526
|
+
if (sz_link_list_other < Mcurmax) {
|
527
|
+
data[sz_link_list_other] = cur_c;
|
528
|
+
setListCount(ll_other, sz_link_list_other + 1);
|
529
|
+
} else {
|
530
|
+
// finding the "weakest" element to replace it with the new one
|
531
|
+
dist_t d_max = fstdistfunc_(getDataByInternalId(cur_c), getDataByInternalId(selectedNeighbors[idx]),
|
532
|
+
dist_func_param_);
|
533
|
+
// Heuristic:
|
534
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> candidates;
|
535
|
+
candidates.emplace(d_max, cur_c);
|
478
536
|
|
479
|
-
|
537
|
+
for (size_t j = 0; j < sz_link_list_other; j++) {
|
538
|
+
candidates.emplace(
|
539
|
+
fstdistfunc_(getDataByInternalId(data[j]), getDataByInternalId(selectedNeighbors[idx]),
|
540
|
+
dist_func_param_), data[j]);
|
541
|
+
}
|
480
542
|
|
481
|
-
|
482
|
-
while (candidates.size() > 0) {
|
483
|
-
data[indx] = candidates.top().second;
|
484
|
-
candidates.pop();
|
485
|
-
indx++;
|
486
|
-
}
|
543
|
+
getNeighborsByHeuristic2(candidates, Mcurmax);
|
487
544
|
|
488
|
-
|
489
|
-
|
490
|
-
|
491
|
-
|
492
|
-
|
493
|
-
|
494
|
-
|
495
|
-
|
496
|
-
|
545
|
+
int indx = 0;
|
546
|
+
while (candidates.size() > 0) {
|
547
|
+
data[indx] = candidates.top().second;
|
548
|
+
candidates.pop();
|
549
|
+
indx++;
|
550
|
+
}
|
551
|
+
|
552
|
+
setListCount(ll_other, indx);
|
553
|
+
// Nearest K:
|
554
|
+
/*int indx = -1;
|
555
|
+
for (int j = 0; j < sz_link_list_other; j++) {
|
556
|
+
dist_t d = fstdistfunc_(getDataByInternalId(data[j]), getDataByInternalId(rez[idx]), dist_func_param_);
|
557
|
+
if (d > d_max) {
|
558
|
+
indx = j;
|
559
|
+
d_max = d;
|
497
560
|
}
|
498
|
-
if (indx >= 0) {
|
499
|
-
data[indx] = cur_c;
|
500
|
-
} */
|
501
561
|
}
|
562
|
+
if (indx >= 0) {
|
563
|
+
data[indx] = cur_c;
|
564
|
+
} */
|
502
565
|
}
|
503
566
|
}
|
504
|
-
|
505
|
-
return next_closest_entry_point;
|
506
567
|
}
|
507
568
|
|
508
|
-
|
509
|
-
|
569
|
+
return next_closest_entry_point;
|
570
|
+
}
|
510
571
|
|
511
|
-
void setEf(size_t ef) {
|
512
|
-
ef_ = ef;
|
513
|
-
}
|
514
572
|
|
573
|
+
void resizeIndex(size_t new_max_elements) {
|
574
|
+
if (new_max_elements < cur_element_count)
|
575
|
+
throw std::runtime_error("Cannot resize, max element is less than the current number of elements");
|
515
576
|
|
516
|
-
|
517
|
-
|
518
|
-
if (cur_element_count == 0) return top_candidates;
|
519
|
-
tableint currObj = enterpoint_node_;
|
520
|
-
dist_t curdist = fstdistfunc_(query_data, getDataByInternalId(enterpoint_node_), dist_func_param_);
|
577
|
+
delete visited_list_pool_;
|
578
|
+
visited_list_pool_ = new VisitedListPool(1, new_max_elements);
|
521
579
|
|
522
|
-
|
523
|
-
bool changed = true;
|
524
|
-
while (changed) {
|
525
|
-
changed = false;
|
526
|
-
int *data;
|
527
|
-
data = (int *) get_linklist(currObj,level);
|
528
|
-
int size = getListCount(data);
|
529
|
-
tableint *datal = (tableint *) (data + 1);
|
530
|
-
for (int i = 0; i < size; i++) {
|
531
|
-
tableint cand = datal[i];
|
532
|
-
if (cand < 0 || cand > max_elements_)
|
533
|
-
throw std::runtime_error("cand error");
|
534
|
-
dist_t d = fstdistfunc_(query_data, getDataByInternalId(cand), dist_func_param_);
|
580
|
+
element_levels_.resize(new_max_elements);
|
535
581
|
|
536
|
-
|
537
|
-
curdist = d;
|
538
|
-
currObj = cand;
|
539
|
-
changed = true;
|
540
|
-
}
|
541
|
-
}
|
542
|
-
}
|
543
|
-
}
|
582
|
+
std::vector<std::mutex>(new_max_elements).swap(link_list_locks_);
|
544
583
|
|
545
|
-
|
546
|
-
|
547
|
-
|
548
|
-
|
549
|
-
|
550
|
-
else{
|
551
|
-
std::priority_queue<std::pair<dist_t, tableint >> top_candidates1=searchBaseLayerST<false>(currObj, query_data,
|
552
|
-
ef_);
|
553
|
-
top_candidates.swap(top_candidates1);
|
554
|
-
}
|
555
|
-
|
556
|
-
while (top_candidates.size() > k) {
|
557
|
-
top_candidates.pop();
|
558
|
-
}
|
559
|
-
return top_candidates;
|
560
|
-
};
|
584
|
+
// Reallocate base layer
|
585
|
+
char * data_level0_memory_new = (char *) realloc(data_level0_memory_, new_max_elements * size_data_per_element_);
|
586
|
+
if (data_level0_memory_new == nullptr)
|
587
|
+
throw std::runtime_error("Not enough memory: resizeIndex failed to allocate base layer");
|
588
|
+
data_level0_memory_ = data_level0_memory_new;
|
561
589
|
|
562
|
-
|
563
|
-
|
564
|
-
|
590
|
+
// Reallocate all other layers
|
591
|
+
char ** linkLists_new = (char **) realloc(linkLists_, sizeof(void *) * new_max_elements);
|
592
|
+
if (linkLists_new == nullptr)
|
593
|
+
throw std::runtime_error("Not enough memory: resizeIndex failed to allocate other layers");
|
594
|
+
linkLists_ = linkLists_new;
|
565
595
|
|
596
|
+
max_elements_ = new_max_elements;
|
597
|
+
}
|
566
598
|
|
567
|
-
delete visited_list_pool_;
|
568
|
-
visited_list_pool_ = new VisitedListPool(1, new_max_elements);
|
569
599
|
|
600
|
+
void saveIndex(const std::string &location) {
|
601
|
+
std::ofstream output(location, std::ios::binary);
|
602
|
+
std::streampos position;
|
570
603
|
|
571
|
-
|
604
|
+
writeBinaryPOD(output, offsetLevel0_);
|
605
|
+
writeBinaryPOD(output, max_elements_);
|
606
|
+
writeBinaryPOD(output, cur_element_count);
|
607
|
+
writeBinaryPOD(output, size_data_per_element_);
|
608
|
+
writeBinaryPOD(output, label_offset_);
|
609
|
+
writeBinaryPOD(output, offsetData_);
|
610
|
+
writeBinaryPOD(output, maxlevel_);
|
611
|
+
writeBinaryPOD(output, enterpoint_node_);
|
612
|
+
writeBinaryPOD(output, maxM_);
|
572
613
|
|
573
|
-
|
614
|
+
writeBinaryPOD(output, maxM0_);
|
615
|
+
writeBinaryPOD(output, M_);
|
616
|
+
writeBinaryPOD(output, mult_);
|
617
|
+
writeBinaryPOD(output, ef_construction_);
|
574
618
|
|
575
|
-
|
576
|
-
char * data_level0_memory_new = (char *) realloc(data_level0_memory_, new_max_elements * size_data_per_element_);
|
577
|
-
if (data_level0_memory_new == nullptr)
|
578
|
-
throw std::runtime_error("Not enough memory: resizeIndex failed to allocate base layer");
|
579
|
-
data_level0_memory_ = data_level0_memory_new;
|
619
|
+
output.write(data_level0_memory_, cur_element_count * size_data_per_element_);
|
580
620
|
|
581
|
-
|
582
|
-
|
583
|
-
|
584
|
-
|
585
|
-
|
586
|
-
|
587
|
-
max_elements_ = new_max_elements;
|
621
|
+
for (size_t i = 0; i < cur_element_count; i++) {
|
622
|
+
unsigned int linkListSize = element_levels_[i] > 0 ? size_links_per_element_ * element_levels_[i] : 0;
|
623
|
+
writeBinaryPOD(output, linkListSize);
|
624
|
+
if (linkListSize)
|
625
|
+
output.write(linkLists_[i], linkListSize);
|
588
626
|
}
|
627
|
+
output.close();
|
628
|
+
}
|
629
|
+
|
630
|
+
|
631
|
+
void loadIndex(const std::string &location, SpaceInterface<dist_t> *s, size_t max_elements_i = 0) {
|
632
|
+
std::ifstream input(location, std::ios::binary);
|
633
|
+
|
634
|
+
if (!input.is_open())
|
635
|
+
throw std::runtime_error("Cannot open file");
|
636
|
+
|
637
|
+
// get file size:
|
638
|
+
input.seekg(0, input.end);
|
639
|
+
std::streampos total_filesize = input.tellg();
|
640
|
+
input.seekg(0, input.beg);
|
641
|
+
|
642
|
+
readBinaryPOD(input, offsetLevel0_);
|
643
|
+
readBinaryPOD(input, max_elements_);
|
644
|
+
readBinaryPOD(input, cur_element_count);
|
645
|
+
|
646
|
+
size_t max_elements = max_elements_i;
|
647
|
+
if (max_elements < cur_element_count)
|
648
|
+
max_elements = max_elements_;
|
649
|
+
max_elements_ = max_elements;
|
650
|
+
readBinaryPOD(input, size_data_per_element_);
|
651
|
+
readBinaryPOD(input, label_offset_);
|
652
|
+
readBinaryPOD(input, offsetData_);
|
653
|
+
readBinaryPOD(input, maxlevel_);
|
654
|
+
readBinaryPOD(input, enterpoint_node_);
|
655
|
+
|
656
|
+
readBinaryPOD(input, maxM_);
|
657
|
+
readBinaryPOD(input, maxM0_);
|
658
|
+
readBinaryPOD(input, M_);
|
659
|
+
readBinaryPOD(input, mult_);
|
660
|
+
readBinaryPOD(input, ef_construction_);
|
661
|
+
|
662
|
+
data_size_ = s->get_data_size();
|
663
|
+
fstdistfunc_ = s->get_dist_func();
|
664
|
+
dist_func_param_ = s->get_dist_func_param();
|
665
|
+
|
666
|
+
auto pos = input.tellg();
|
667
|
+
|
668
|
+
/// Optional - check if index is ok:
|
669
|
+
input.seekg(cur_element_count * size_data_per_element_, input.cur);
|
670
|
+
for (size_t i = 0; i < cur_element_count; i++) {
|
671
|
+
if (input.tellg() < 0 || input.tellg() >= total_filesize) {
|
672
|
+
throw std::runtime_error("Index seems to be corrupted or unsupported");
|
673
|
+
}
|
589
674
|
|
590
|
-
|
591
|
-
|
592
|
-
|
593
|
-
|
594
|
-
writeBinaryPOD(output, offsetLevel0_);
|
595
|
-
writeBinaryPOD(output, max_elements_);
|
596
|
-
writeBinaryPOD(output, cur_element_count);
|
597
|
-
writeBinaryPOD(output, size_data_per_element_);
|
598
|
-
writeBinaryPOD(output, label_offset_);
|
599
|
-
writeBinaryPOD(output, offsetData_);
|
600
|
-
writeBinaryPOD(output, maxlevel_);
|
601
|
-
writeBinaryPOD(output, enterpoint_node_);
|
602
|
-
writeBinaryPOD(output, maxM_);
|
603
|
-
|
604
|
-
writeBinaryPOD(output, maxM0_);
|
605
|
-
writeBinaryPOD(output, M_);
|
606
|
-
writeBinaryPOD(output, mult_);
|
607
|
-
writeBinaryPOD(output, ef_construction_);
|
608
|
-
|
609
|
-
output.write(data_level0_memory_, cur_element_count * size_data_per_element_);
|
610
|
-
|
611
|
-
for (size_t i = 0; i < cur_element_count; i++) {
|
612
|
-
unsigned int linkListSize = element_levels_[i] > 0 ? size_links_per_element_ * element_levels_[i] : 0;
|
613
|
-
writeBinaryPOD(output, linkListSize);
|
614
|
-
if (linkListSize)
|
615
|
-
output.write(linkLists_[i], linkListSize);
|
675
|
+
unsigned int linkListSize;
|
676
|
+
readBinaryPOD(input, linkListSize);
|
677
|
+
if (linkListSize != 0) {
|
678
|
+
input.seekg(linkListSize, input.cur);
|
616
679
|
}
|
617
|
-
output.close();
|
618
680
|
}
|
619
681
|
|
620
|
-
|
621
|
-
|
622
|
-
|
623
|
-
|
624
|
-
|
625
|
-
|
626
|
-
|
627
|
-
|
628
|
-
|
629
|
-
|
630
|
-
|
631
|
-
|
632
|
-
|
633
|
-
|
682
|
+
// throw exception if it either corrupted or old index
|
683
|
+
if (input.tellg() != total_filesize)
|
684
|
+
throw std::runtime_error("Index seems to be corrupted or unsupported");
|
685
|
+
|
686
|
+
input.clear();
|
687
|
+
/// Optional check end
|
688
|
+
|
689
|
+
input.seekg(pos, input.beg);
|
690
|
+
|
691
|
+
data_level0_memory_ = (char *) malloc(max_elements * size_data_per_element_);
|
692
|
+
if (data_level0_memory_ == nullptr)
|
693
|
+
throw std::runtime_error("Not enough memory: loadIndex failed to allocate level0");
|
694
|
+
input.read(data_level0_memory_, cur_element_count * size_data_per_element_);
|
695
|
+
|
696
|
+
size_links_per_element_ = maxM_ * sizeof(tableint) + sizeof(linklistsizeint);
|
697
|
+
|
698
|
+
size_links_level0_ = maxM0_ * sizeof(tableint) + sizeof(linklistsizeint);
|
699
|
+
std::vector<std::mutex>(max_elements).swap(link_list_locks_);
|
700
|
+
std::vector<std::mutex>(MAX_LABEL_OPERATION_LOCKS).swap(label_op_locks_);
|
701
|
+
|
702
|
+
visited_list_pool_ = new VisitedListPool(1, max_elements);
|
703
|
+
|
704
|
+
linkLists_ = (char **) malloc(sizeof(void *) * max_elements);
|
705
|
+
if (linkLists_ == nullptr)
|
706
|
+
throw std::runtime_error("Not enough memory: loadIndex failed to allocate linklists");
|
707
|
+
element_levels_ = std::vector<int>(max_elements);
|
708
|
+
revSize_ = 1.0 / mult_;
|
709
|
+
ef_ = 10;
|
710
|
+
for (size_t i = 0; i < cur_element_count; i++) {
|
711
|
+
label_lookup_[getExternalLabel(i)] = i;
|
712
|
+
unsigned int linkListSize;
|
713
|
+
readBinaryPOD(input, linkListSize);
|
714
|
+
if (linkListSize == 0) {
|
715
|
+
element_levels_[i] = 0;
|
716
|
+
linkLists_[i] = nullptr;
|
717
|
+
} else {
|
718
|
+
element_levels_[i] = linkListSize / size_links_per_element_;
|
719
|
+
linkLists_[i] = (char *) malloc(linkListSize);
|
720
|
+
if (linkLists_[i] == nullptr)
|
721
|
+
throw std::runtime_error("Not enough memory: loadIndex failed to allocate linklist");
|
722
|
+
input.read(linkLists_[i], linkListSize);
|
723
|
+
}
|
724
|
+
}
|
634
725
|
|
635
|
-
|
636
|
-
if(
|
637
|
-
|
638
|
-
|
639
|
-
|
640
|
-
|
641
|
-
readBinaryPOD(input, offsetData_);
|
642
|
-
readBinaryPOD(input, maxlevel_);
|
643
|
-
readBinaryPOD(input, enterpoint_node_);
|
726
|
+
for (size_t i = 0; i < cur_element_count; i++) {
|
727
|
+
if (isMarkedDeleted(i)) {
|
728
|
+
num_deleted_ += 1;
|
729
|
+
if (allow_replace_deleted_) deleted_elements.insert(i);
|
730
|
+
}
|
731
|
+
}
|
644
732
|
|
645
|
-
|
646
|
-
readBinaryPOD(input, maxM0_);
|
647
|
-
readBinaryPOD(input, M_);
|
648
|
-
readBinaryPOD(input, mult_);
|
649
|
-
readBinaryPOD(input, ef_construction_);
|
733
|
+
input.close();
|
650
734
|
|
735
|
+
return;
|
736
|
+
}
|
651
737
|
|
652
|
-
data_size_ = s->get_data_size();
|
653
|
-
fstdistfunc_ = s->get_dist_func();
|
654
|
-
dist_func_param_ = s->get_dist_func_param();
|
655
738
|
|
656
|
-
|
739
|
+
template<typename data_t>
|
740
|
+
std::vector<data_t> getDataByLabel(labeltype label) const {
|
741
|
+
// lock all operations with element by label
|
742
|
+
std::unique_lock <std::mutex> lock_label(getLabelOpMutex(label));
|
657
743
|
|
744
|
+
std::unique_lock <std::mutex> lock_table(label_lookup_lock);
|
745
|
+
auto search = label_lookup_.find(label);
|
746
|
+
if (search == label_lookup_.end() || isMarkedDeleted(search->second)) {
|
747
|
+
throw std::runtime_error("Label not found");
|
748
|
+
}
|
749
|
+
tableint internalId = search->second;
|
750
|
+
lock_table.unlock();
|
751
|
+
|
752
|
+
char* data_ptrv = getDataByInternalId(internalId);
|
753
|
+
size_t dim = *((size_t *) dist_func_param_);
|
754
|
+
std::vector<data_t> data;
|
755
|
+
data_t* data_ptr = (data_t*) data_ptrv;
|
756
|
+
for (int i = 0; i < dim; i++) {
|
757
|
+
data.push_back(*data_ptr);
|
758
|
+
data_ptr += 1;
|
759
|
+
}
|
760
|
+
return data;
|
761
|
+
}
|
658
762
|
|
659
|
-
/// Optional - check if index is ok:
|
660
763
|
|
661
|
-
|
662
|
-
|
663
|
-
|
664
|
-
|
665
|
-
|
764
|
+
/*
|
765
|
+
* Marks an element with the given label deleted, does NOT really change the current graph.
|
766
|
+
*/
|
767
|
+
void markDelete(labeltype label) {
|
768
|
+
// lock all operations with element by label
|
769
|
+
std::unique_lock <std::mutex> lock_label(getLabelOpMutex(label));
|
666
770
|
|
667
|
-
|
668
|
-
|
669
|
-
|
670
|
-
|
671
|
-
|
771
|
+
std::unique_lock <std::mutex> lock_table(label_lookup_lock);
|
772
|
+
auto search = label_lookup_.find(label);
|
773
|
+
if (search == label_lookup_.end()) {
|
774
|
+
throw std::runtime_error("Label not found");
|
775
|
+
}
|
776
|
+
tableint internalId = search->second;
|
777
|
+
lock_table.unlock();
|
778
|
+
|
779
|
+
markDeletedInternal(internalId);
|
780
|
+
}
|
781
|
+
|
782
|
+
|
783
|
+
/*
|
784
|
+
* Uses the last 16 bits of the memory for the linked list size to store the mark,
|
785
|
+
* whereas maxM0_ has to be limited to the lower 16 bits, however, still large enough in almost all cases.
|
786
|
+
*/
|
787
|
+
void markDeletedInternal(tableint internalId) {
|
788
|
+
assert(internalId < cur_element_count);
|
789
|
+
if (!isMarkedDeleted(internalId)) {
|
790
|
+
unsigned char *ll_cur = ((unsigned char *)get_linklist0(internalId))+2;
|
791
|
+
*ll_cur |= DELETE_MARK;
|
792
|
+
num_deleted_ += 1;
|
793
|
+
if (allow_replace_deleted_) {
|
794
|
+
std::unique_lock <std::mutex> lock_deleted_elements(deleted_elements_lock);
|
795
|
+
deleted_elements.insert(internalId);
|
672
796
|
}
|
797
|
+
} else {
|
798
|
+
throw std::runtime_error("The requested to delete element is already deleted");
|
799
|
+
}
|
800
|
+
}
|
801
|
+
|
802
|
+
|
803
|
+
/*
|
804
|
+
* Removes the deleted mark of the node, does NOT really change the current graph.
|
805
|
+
*
|
806
|
+
* Note: the method is not safe to use when replacement of deleted elements is enabled,
|
807
|
+
* because elements marked as deleted can be completely removed by addPoint
|
808
|
+
*/
|
809
|
+
void unmarkDelete(labeltype label) {
|
810
|
+
// lock all operations with element by label
|
811
|
+
std::unique_lock <std::mutex> lock_label(getLabelOpMutex(label));
|
812
|
+
|
813
|
+
std::unique_lock <std::mutex> lock_table(label_lookup_lock);
|
814
|
+
auto search = label_lookup_.find(label);
|
815
|
+
if (search == label_lookup_.end()) {
|
816
|
+
throw std::runtime_error("Label not found");
|
817
|
+
}
|
818
|
+
tableint internalId = search->second;
|
819
|
+
lock_table.unlock();
|
820
|
+
|
821
|
+
unmarkDeletedInternal(internalId);
|
822
|
+
}
|
823
|
+
|
824
|
+
|
825
|
+
|
826
|
+
/*
|
827
|
+
* Remove the deleted mark of the node.
|
828
|
+
*/
|
829
|
+
void unmarkDeletedInternal(tableint internalId) {
|
830
|
+
assert(internalId < cur_element_count);
|
831
|
+
if (isMarkedDeleted(internalId)) {
|
832
|
+
unsigned char *ll_cur = ((unsigned char *)get_linklist0(internalId)) + 2;
|
833
|
+
*ll_cur &= ~DELETE_MARK;
|
834
|
+
num_deleted_ -= 1;
|
835
|
+
if (allow_replace_deleted_) {
|
836
|
+
std::unique_lock <std::mutex> lock_deleted_elements(deleted_elements_lock);
|
837
|
+
deleted_elements.erase(internalId);
|
838
|
+
}
|
839
|
+
} else {
|
840
|
+
throw std::runtime_error("The requested to undelete element is not deleted");
|
841
|
+
}
|
842
|
+
}
|
673
843
|
|
674
|
-
// throw exception if it either corrupted or old index
|
675
|
-
if(input.tellg()!=total_filesize)
|
676
|
-
throw std::runtime_error("Index seems to be corrupted or unsupported");
|
677
|
-
|
678
|
-
input.clear();
|
679
|
-
|
680
|
-
/// Optional check end
|
681
|
-
|
682
|
-
input.seekg(pos,input.beg);
|
683
|
-
|
684
|
-
data_level0_memory_ = (char *) malloc(max_elements * size_data_per_element_);
|
685
|
-
if (data_level0_memory_ == nullptr)
|
686
|
-
throw std::runtime_error("Not enough memory: loadIndex failed to allocate level0");
|
687
|
-
input.read(data_level0_memory_, cur_element_count * size_data_per_element_);
|
688
844
|
|
689
|
-
|
845
|
+
/*
|
846
|
+
* Checks the first 16 bits of the memory to see if the element is marked deleted.
|
847
|
+
*/
|
848
|
+
bool isMarkedDeleted(tableint internalId) const {
|
849
|
+
unsigned char *ll_cur = ((unsigned char*)get_linklist0(internalId)) + 2;
|
850
|
+
return *ll_cur & DELETE_MARK;
|
851
|
+
}
|
690
852
|
|
691
|
-
size_links_level0_ = maxM0_ * sizeof(tableint) + sizeof(linklistsizeint);
|
692
|
-
std::vector<std::mutex>(max_elements).swap(link_list_locks_);
|
693
|
-
std::vector<std::mutex>(max_update_element_locks).swap(link_list_update_locks_);
|
694
853
|
|
695
|
-
|
854
|
+
unsigned short int getListCount(linklistsizeint * ptr) const {
|
855
|
+
return *((unsigned short int *)ptr);
|
856
|
+
}
|
696
857
|
|
697
|
-
linkLists_ = (char **) malloc(sizeof(void *) * max_elements);
|
698
|
-
if (linkLists_ == nullptr)
|
699
|
-
throw std::runtime_error("Not enough memory: loadIndex failed to allocate linklists");
|
700
|
-
element_levels_ = std::vector<int>(max_elements);
|
701
|
-
revSize_ = 1.0 / mult_;
|
702
|
-
ef_ = 10;
|
703
|
-
for (size_t i = 0; i < cur_element_count; i++) {
|
704
|
-
label_lookup_[getExternalLabel(i)]=i;
|
705
|
-
unsigned int linkListSize;
|
706
|
-
readBinaryPOD(input, linkListSize);
|
707
|
-
if (linkListSize == 0) {
|
708
|
-
element_levels_[i] = 0;
|
709
858
|
|
710
|
-
|
711
|
-
|
712
|
-
|
713
|
-
linkLists_[i] = (char *) malloc(linkListSize);
|
714
|
-
if (linkLists_[i] == nullptr)
|
715
|
-
throw std::runtime_error("Not enough memory: loadIndex failed to allocate linklist");
|
716
|
-
input.read(linkLists_[i], linkListSize);
|
717
|
-
}
|
718
|
-
}
|
719
|
-
|
720
|
-
for (size_t i = 0; i < cur_element_count; i++) {
|
721
|
-
if(isMarkedDeleted(i))
|
722
|
-
num_deleted_ += 1;
|
723
|
-
}
|
859
|
+
void setListCount(linklistsizeint * ptr, unsigned short int size) const {
|
860
|
+
*((unsigned short int*)(ptr))=*((unsigned short int *)&size);
|
861
|
+
}
|
724
862
|
|
725
|
-
input.close();
|
726
863
|
|
727
|
-
|
864
|
+
/*
|
865
|
+
* Adds point. Updates the point if it is already in the index.
|
866
|
+
* If replacement of deleted elements is enabled: replaces previously deleted point if any, updating it with new point
|
867
|
+
*/
|
868
|
+
void addPoint(const void *data_point, labeltype label, bool replace_deleted = false) {
|
869
|
+
if ((allow_replace_deleted_ == false) && (replace_deleted == true)) {
|
870
|
+
throw std::runtime_error("Replacement of deleted elements is disabled in constructor");
|
728
871
|
}
|
729
872
|
|
730
|
-
|
731
|
-
std::
|
732
|
-
{
|
733
|
-
|
734
|
-
|
735
|
-
if (search == label_lookup_.end() || isMarkedDeleted(search->second)) {
|
736
|
-
throw std::runtime_error("Label not found");
|
737
|
-
}
|
738
|
-
label_c = search->second;
|
739
|
-
|
740
|
-
char* data_ptrv = getDataByInternalId(label_c);
|
741
|
-
size_t dim = *((size_t *) dist_func_param_);
|
742
|
-
std::vector<data_t> data;
|
743
|
-
data_t* data_ptr = (data_t*) data_ptrv;
|
744
|
-
for (int i = 0; i < dim; i++) {
|
745
|
-
data.push_back(*data_ptr);
|
746
|
-
data_ptr += 1;
|
747
|
-
}
|
748
|
-
return data;
|
873
|
+
// lock all operations with element by label
|
874
|
+
std::unique_lock <std::mutex> lock_label(getLabelOpMutex(label));
|
875
|
+
if (!replace_deleted) {
|
876
|
+
addPoint(data_point, label, -1);
|
877
|
+
return;
|
749
878
|
}
|
750
|
-
|
751
|
-
|
752
|
-
|
753
|
-
|
754
|
-
|
755
|
-
|
756
|
-
|
757
|
-
void markDelete(labeltype label)
|
758
|
-
{
|
759
|
-
auto search = label_lookup_.find(label);
|
760
|
-
if (search == label_lookup_.end()) {
|
761
|
-
throw std::runtime_error("Label not found");
|
762
|
-
}
|
763
|
-
tableint internalId = search->second;
|
764
|
-
markDeletedInternal(internalId);
|
879
|
+
// check if there is vacant place
|
880
|
+
tableint internal_id_replaced;
|
881
|
+
std::unique_lock <std::mutex> lock_deleted_elements(deleted_elements_lock);
|
882
|
+
bool is_vacant_place = !deleted_elements.empty();
|
883
|
+
if (is_vacant_place) {
|
884
|
+
internal_id_replaced = *deleted_elements.begin();
|
885
|
+
deleted_elements.erase(internal_id_replaced);
|
765
886
|
}
|
766
|
-
|
767
|
-
|
768
|
-
|
769
|
-
|
770
|
-
|
771
|
-
|
772
|
-
|
773
|
-
|
774
|
-
|
775
|
-
|
776
|
-
|
777
|
-
|
778
|
-
|
779
|
-
|
780
|
-
|
781
|
-
|
782
|
-
|
783
|
-
|
887
|
+
lock_deleted_elements.unlock();
|
888
|
+
|
889
|
+
// if there is no vacant place then add or update point
|
890
|
+
// else add point to vacant place
|
891
|
+
if (!is_vacant_place) {
|
892
|
+
addPoint(data_point, label, -1);
|
893
|
+
} else {
|
894
|
+
// we assume that there are no concurrent operations on deleted element
|
895
|
+
labeltype label_replaced = getExternalLabel(internal_id_replaced);
|
896
|
+
setExternalLabel(internal_id_replaced, label);
|
897
|
+
|
898
|
+
std::unique_lock <std::mutex> lock_table(label_lookup_lock);
|
899
|
+
label_lookup_.erase(label_replaced);
|
900
|
+
label_lookup_[label] = internal_id_replaced;
|
901
|
+
lock_table.unlock();
|
902
|
+
|
903
|
+
unmarkDeletedInternal(internal_id_replaced);
|
904
|
+
updatePoint(data_point, internal_id_replaced, 1.0);
|
784
905
|
}
|
906
|
+
}
|
785
907
|
|
786
|
-
/**
|
787
|
-
* Remove the deleted mark of the node, does NOT really change the current graph.
|
788
|
-
* @param label
|
789
|
-
*/
|
790
|
-
void unmarkDelete(labeltype label)
|
791
|
-
{
|
792
|
-
auto search = label_lookup_.find(label);
|
793
|
-
if (search == label_lookup_.end()) {
|
794
|
-
throw std::runtime_error("Label not found");
|
795
|
-
}
|
796
|
-
tableint internalId = search->second;
|
797
|
-
unmarkDeletedInternal(internalId);
|
798
|
-
}
|
799
908
|
|
800
|
-
|
801
|
-
|
802
|
-
|
803
|
-
*/
|
804
|
-
void unmarkDeletedInternal(tableint internalId) {
|
805
|
-
assert(internalId < cur_element_count);
|
806
|
-
if (isMarkedDeleted(internalId))
|
807
|
-
{
|
808
|
-
unsigned char *ll_cur = ((unsigned char *)get_linklist0(internalId))+2;
|
809
|
-
*ll_cur &= ~DELETE_MARK;
|
810
|
-
num_deleted_ -= 1;
|
811
|
-
}
|
812
|
-
else
|
813
|
-
{
|
814
|
-
throw std::runtime_error("The requested to undelete element is not deleted");
|
815
|
-
}
|
816
|
-
}
|
909
|
+
void updatePoint(const void *dataPoint, tableint internalId, float updateNeighborProbability) {
|
910
|
+
// update the feature vector associated with existing point with new vector
|
911
|
+
memcpy(getDataByInternalId(internalId), dataPoint, data_size_);
|
817
912
|
|
818
|
-
|
819
|
-
|
820
|
-
|
821
|
-
|
822
|
-
|
823
|
-
bool isMarkedDeleted(tableint internalId) const {
|
824
|
-
unsigned char *ll_cur = ((unsigned char*)get_linklist0(internalId))+2;
|
825
|
-
return *ll_cur & DELETE_MARK;
|
826
|
-
}
|
913
|
+
int maxLevelCopy = maxlevel_;
|
914
|
+
tableint entryPointCopy = enterpoint_node_;
|
915
|
+
// If point to be updated is entry point and graph just contains single element then just return.
|
916
|
+
if (entryPointCopy == internalId && cur_element_count == 1)
|
917
|
+
return;
|
827
918
|
|
828
|
-
|
829
|
-
|
830
|
-
|
919
|
+
int elemLevel = element_levels_[internalId];
|
920
|
+
std::uniform_real_distribution<float> distribution(0.0, 1.0);
|
921
|
+
for (int layer = 0; layer <= elemLevel; layer++) {
|
922
|
+
std::unordered_set<tableint> sCand;
|
923
|
+
std::unordered_set<tableint> sNeigh;
|
924
|
+
std::vector<tableint> listOneHop = getConnectionsWithLock(internalId, layer);
|
925
|
+
if (listOneHop.size() == 0)
|
926
|
+
continue;
|
831
927
|
|
832
|
-
|
833
|
-
*((unsigned short int*)(ptr))=*((unsigned short int *)&size);
|
834
|
-
}
|
928
|
+
sCand.insert(internalId);
|
835
929
|
|
836
|
-
|
837
|
-
|
838
|
-
}
|
930
|
+
for (auto&& elOneHop : listOneHop) {
|
931
|
+
sCand.insert(elOneHop);
|
839
932
|
|
840
|
-
|
841
|
-
// update the feature vector associated with existing point with new vector
|
842
|
-
memcpy(getDataByInternalId(internalId), dataPoint, data_size_);
|
843
|
-
|
844
|
-
int maxLevelCopy = maxlevel_;
|
845
|
-
tableint entryPointCopy = enterpoint_node_;
|
846
|
-
// If point to be updated is entry point and graph just contains single element then just return.
|
847
|
-
if (entryPointCopy == internalId && cur_element_count == 1)
|
848
|
-
return;
|
849
|
-
|
850
|
-
int elemLevel = element_levels_[internalId];
|
851
|
-
std::uniform_real_distribution<float> distribution(0.0, 1.0);
|
852
|
-
for (int layer = 0; layer <= elemLevel; layer++) {
|
853
|
-
std::unordered_set<tableint> sCand;
|
854
|
-
std::unordered_set<tableint> sNeigh;
|
855
|
-
std::vector<tableint> listOneHop = getConnectionsWithLock(internalId, layer);
|
856
|
-
if (listOneHop.size() == 0)
|
933
|
+
if (distribution(update_probability_generator_) > updateNeighborProbability)
|
857
934
|
continue;
|
858
935
|
|
859
|
-
|
936
|
+
sNeigh.insert(elOneHop);
|
860
937
|
|
861
|
-
|
862
|
-
|
863
|
-
|
864
|
-
if (distribution(update_probability_generator_) > updateNeighborProbability)
|
865
|
-
continue;
|
866
|
-
|
867
|
-
sNeigh.insert(elOneHop);
|
868
|
-
|
869
|
-
std::vector<tableint> listTwoHop = getConnectionsWithLock(elOneHop, layer);
|
870
|
-
for (auto&& elTwoHop : listTwoHop) {
|
871
|
-
sCand.insert(elTwoHop);
|
872
|
-
}
|
938
|
+
std::vector<tableint> listTwoHop = getConnectionsWithLock(elOneHop, layer);
|
939
|
+
for (auto&& elTwoHop : listTwoHop) {
|
940
|
+
sCand.insert(elTwoHop);
|
873
941
|
}
|
942
|
+
}
|
874
943
|
|
875
|
-
|
876
|
-
|
877
|
-
|
944
|
+
for (auto&& neigh : sNeigh) {
|
945
|
+
// if (neigh == internalId)
|
946
|
+
// continue;
|
878
947
|
|
879
|
-
|
880
|
-
|
881
|
-
|
882
|
-
|
883
|
-
|
884
|
-
|
885
|
-
|
886
|
-
|
887
|
-
|
948
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> candidates;
|
949
|
+
size_t size = sCand.find(neigh) == sCand.end() ? sCand.size() : sCand.size() - 1; // sCand guaranteed to have size >= 1
|
950
|
+
size_t elementsToKeep = std::min(ef_construction_, size);
|
951
|
+
for (auto&& cand : sCand) {
|
952
|
+
if (cand == neigh)
|
953
|
+
continue;
|
954
|
+
|
955
|
+
dist_t distance = fstdistfunc_(getDataByInternalId(neigh), getDataByInternalId(cand), dist_func_param_);
|
956
|
+
if (candidates.size() < elementsToKeep) {
|
957
|
+
candidates.emplace(distance, cand);
|
958
|
+
} else {
|
959
|
+
if (distance < candidates.top().first) {
|
960
|
+
candidates.pop();
|
888
961
|
candidates.emplace(distance, cand);
|
889
|
-
} else {
|
890
|
-
if (distance < candidates.top().first) {
|
891
|
-
candidates.pop();
|
892
|
-
candidates.emplace(distance, cand);
|
893
|
-
}
|
894
962
|
}
|
895
963
|
}
|
964
|
+
}
|
896
965
|
|
897
|
-
|
898
|
-
|
899
|
-
|
900
|
-
|
901
|
-
|
902
|
-
|
903
|
-
|
904
|
-
|
905
|
-
|
906
|
-
|
907
|
-
|
908
|
-
|
909
|
-
|
910
|
-
}
|
966
|
+
// Retrieve neighbours using heuristic and set connections.
|
967
|
+
getNeighborsByHeuristic2(candidates, layer == 0 ? maxM0_ : maxM_);
|
968
|
+
|
969
|
+
{
|
970
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[neigh]);
|
971
|
+
linklistsizeint *ll_cur;
|
972
|
+
ll_cur = get_linklist_at_level(neigh, layer);
|
973
|
+
size_t candSize = candidates.size();
|
974
|
+
setListCount(ll_cur, candSize);
|
975
|
+
tableint *data = (tableint *) (ll_cur + 1);
|
976
|
+
for (size_t idx = 0; idx < candSize; idx++) {
|
977
|
+
data[idx] = candidates.top().second;
|
978
|
+
candidates.pop();
|
911
979
|
}
|
912
980
|
}
|
913
981
|
}
|
982
|
+
}
|
914
983
|
|
915
|
-
|
916
|
-
|
984
|
+
repairConnectionsForUpdate(dataPoint, entryPointCopy, internalId, elemLevel, maxLevelCopy);
|
985
|
+
}
|
917
986
|
|
918
|
-
|
919
|
-
|
920
|
-
|
921
|
-
|
922
|
-
|
923
|
-
|
924
|
-
|
925
|
-
|
926
|
-
|
927
|
-
|
928
|
-
|
929
|
-
|
930
|
-
|
987
|
+
|
988
|
+
void repairConnectionsForUpdate(
|
989
|
+
const void *dataPoint,
|
990
|
+
tableint entryPointInternalId,
|
991
|
+
tableint dataPointInternalId,
|
992
|
+
int dataPointLevel,
|
993
|
+
int maxLevel) {
|
994
|
+
tableint currObj = entryPointInternalId;
|
995
|
+
if (dataPointLevel < maxLevel) {
|
996
|
+
dist_t curdist = fstdistfunc_(dataPoint, getDataByInternalId(currObj), dist_func_param_);
|
997
|
+
for (int level = maxLevel; level > dataPointLevel; level--) {
|
998
|
+
bool changed = true;
|
999
|
+
while (changed) {
|
1000
|
+
changed = false;
|
1001
|
+
unsigned int *data;
|
1002
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[currObj]);
|
1003
|
+
data = get_linklist_at_level(currObj, level);
|
1004
|
+
int size = getListCount(data);
|
1005
|
+
tableint *datal = (tableint *) (data + 1);
|
931
1006
|
#ifdef USE_SSE
|
932
|
-
|
1007
|
+
_mm_prefetch(getDataByInternalId(*datal), _MM_HINT_T0);
|
933
1008
|
#endif
|
934
|
-
|
1009
|
+
for (int i = 0; i < size; i++) {
|
935
1010
|
#ifdef USE_SSE
|
936
|
-
|
1011
|
+
_mm_prefetch(getDataByInternalId(*(datal + i + 1)), _MM_HINT_T0);
|
937
1012
|
#endif
|
938
|
-
|
939
|
-
|
940
|
-
|
941
|
-
|
942
|
-
|
943
|
-
|
944
|
-
}
|
1013
|
+
tableint cand = datal[i];
|
1014
|
+
dist_t d = fstdistfunc_(dataPoint, getDataByInternalId(cand), dist_func_param_);
|
1015
|
+
if (d < curdist) {
|
1016
|
+
curdist = d;
|
1017
|
+
currObj = cand;
|
1018
|
+
changed = true;
|
945
1019
|
}
|
946
1020
|
}
|
947
1021
|
}
|
948
1022
|
}
|
1023
|
+
}
|
949
1024
|
|
950
|
-
|
951
|
-
|
952
|
-
|
953
|
-
for (int level = dataPointLevel; level >= 0; level--) {
|
954
|
-
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> topCandidates = searchBaseLayer(
|
955
|
-
currObj, dataPoint, level);
|
1025
|
+
if (dataPointLevel > maxLevel)
|
1026
|
+
throw std::runtime_error("Level of item to be updated cannot be bigger than max level");
|
956
1027
|
|
957
|
-
|
958
|
-
|
959
|
-
|
960
|
-
filteredTopCandidates.push(topCandidates.top());
|
1028
|
+
for (int level = dataPointLevel; level >= 0; level--) {
|
1029
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> topCandidates = searchBaseLayer(
|
1030
|
+
currObj, dataPoint, level);
|
961
1031
|
|
962
|
-
|
963
|
-
|
1032
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> filteredTopCandidates;
|
1033
|
+
while (topCandidates.size() > 0) {
|
1034
|
+
if (topCandidates.top().second != dataPointInternalId)
|
1035
|
+
filteredTopCandidates.push(topCandidates.top());
|
964
1036
|
|
965
|
-
|
966
|
-
|
967
|
-
if (filteredTopCandidates.size() > 0) {
|
968
|
-
bool epDeleted = isMarkedDeleted(entryPointInternalId);
|
969
|
-
if (epDeleted) {
|
970
|
-
filteredTopCandidates.emplace(fstdistfunc_(dataPoint, getDataByInternalId(entryPointInternalId), dist_func_param_), entryPointInternalId);
|
971
|
-
if (filteredTopCandidates.size() > ef_construction_)
|
972
|
-
filteredTopCandidates.pop();
|
973
|
-
}
|
1037
|
+
topCandidates.pop();
|
1038
|
+
}
|
974
1039
|
|
975
|
-
|
1040
|
+
// Since element_levels_ is being used to get `dataPointLevel`, there could be cases where `topCandidates` could just contains entry point itself.
|
1041
|
+
// To prevent self loops, the `topCandidates` is filtered and thus can be empty.
|
1042
|
+
if (filteredTopCandidates.size() > 0) {
|
1043
|
+
bool epDeleted = isMarkedDeleted(entryPointInternalId);
|
1044
|
+
if (epDeleted) {
|
1045
|
+
filteredTopCandidates.emplace(fstdistfunc_(dataPoint, getDataByInternalId(entryPointInternalId), dist_func_param_), entryPointInternalId);
|
1046
|
+
if (filteredTopCandidates.size() > ef_construction_)
|
1047
|
+
filteredTopCandidates.pop();
|
976
1048
|
}
|
1049
|
+
|
1050
|
+
currObj = mutuallyConnectNewElement(dataPoint, dataPointInternalId, filteredTopCandidates, level, true);
|
977
1051
|
}
|
978
1052
|
}
|
1053
|
+
}
|
1054
|
+
|
979
1055
|
|
980
|
-
|
981
|
-
|
982
|
-
|
983
|
-
|
984
|
-
|
985
|
-
|
986
|
-
|
987
|
-
|
988
|
-
|
989
|
-
|
990
|
-
tableint addPoint(const void *data_point, labeltype label, int level) {
|
991
|
-
|
992
|
-
tableint cur_c = 0;
|
993
|
-
{
|
994
|
-
// Checking if the element with the same label already exists
|
995
|
-
// if so, updating it *instead* of creating a new element.
|
996
|
-
std::unique_lock <std::mutex> templock_curr(cur_element_count_guard_);
|
997
|
-
auto search = label_lookup_.find(label);
|
998
|
-
if (search != label_lookup_.end()) {
|
999
|
-
tableint existingInternalId = search->second;
|
1000
|
-
templock_curr.unlock();
|
1001
|
-
|
1002
|
-
std::unique_lock <std::mutex> lock_el_update(link_list_update_locks_[(existingInternalId & (max_update_element_locks - 1))]);
|
1056
|
+
std::vector<tableint> getConnectionsWithLock(tableint internalId, int level) {
|
1057
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[internalId]);
|
1058
|
+
unsigned int *data = get_linklist_at_level(internalId, level);
|
1059
|
+
int size = getListCount(data);
|
1060
|
+
std::vector<tableint> result(size);
|
1061
|
+
tableint *ll = (tableint *) (data + 1);
|
1062
|
+
memcpy(result.data(), ll, size * sizeof(tableint));
|
1063
|
+
return result;
|
1064
|
+
}
|
1003
1065
|
|
1066
|
+
|
1067
|
+
tableint addPoint(const void *data_point, labeltype label, int level) {
|
1068
|
+
tableint cur_c = 0;
|
1069
|
+
{
|
1070
|
+
// Checking if the element with the same label already exists
|
1071
|
+
// if so, updating it *instead* of creating a new element.
|
1072
|
+
std::unique_lock <std::mutex> lock_table(label_lookup_lock);
|
1073
|
+
auto search = label_lookup_.find(label);
|
1074
|
+
if (search != label_lookup_.end()) {
|
1075
|
+
tableint existingInternalId = search->second;
|
1076
|
+
if (allow_replace_deleted_) {
|
1004
1077
|
if (isMarkedDeleted(existingInternalId)) {
|
1005
|
-
|
1078
|
+
throw std::runtime_error("Can't use addPoint to update deleted elements if replacement of deleted elements is enabled.");
|
1006
1079
|
}
|
1007
|
-
updatePoint(data_point, existingInternalId, 1.0);
|
1008
|
-
|
1009
|
-
return existingInternalId;
|
1010
1080
|
}
|
1081
|
+
lock_table.unlock();
|
1011
1082
|
|
1012
|
-
if (
|
1013
|
-
|
1014
|
-
}
|
1083
|
+
if (isMarkedDeleted(existingInternalId)) {
|
1084
|
+
unmarkDeletedInternal(existingInternalId);
|
1085
|
+
}
|
1086
|
+
updatePoint(data_point, existingInternalId, 1.0);
|
1015
1087
|
|
1016
|
-
|
1017
|
-
cur_element_count++;
|
1018
|
-
label_lookup_[label] = cur_c;
|
1088
|
+
return existingInternalId;
|
1019
1089
|
}
|
1020
1090
|
|
1021
|
-
|
1022
|
-
|
1023
|
-
|
1024
|
-
int curlevel = getRandomLevel(mult_);
|
1025
|
-
if (level > 0)
|
1026
|
-
curlevel = level;
|
1091
|
+
if (cur_element_count >= max_elements_) {
|
1092
|
+
throw std::runtime_error("The number of elements exceeds the specified limit");
|
1093
|
+
}
|
1027
1094
|
|
1028
|
-
|
1095
|
+
cur_c = cur_element_count;
|
1096
|
+
cur_element_count++;
|
1097
|
+
label_lookup_[label] = cur_c;
|
1098
|
+
}
|
1029
1099
|
|
1100
|
+
std::unique_lock <std::mutex> lock_el(link_list_locks_[cur_c]);
|
1101
|
+
int curlevel = getRandomLevel(mult_);
|
1102
|
+
if (level > 0)
|
1103
|
+
curlevel = level;
|
1030
1104
|
|
1031
|
-
|
1032
|
-
int maxlevelcopy = maxlevel_;
|
1033
|
-
if (curlevel <= maxlevelcopy)
|
1034
|
-
templock.unlock();
|
1035
|
-
tableint currObj = enterpoint_node_;
|
1036
|
-
tableint enterpoint_copy = enterpoint_node_;
|
1105
|
+
element_levels_[cur_c] = curlevel;
|
1037
1106
|
|
1107
|
+
std::unique_lock <std::mutex> templock(global);
|
1108
|
+
int maxlevelcopy = maxlevel_;
|
1109
|
+
if (curlevel <= maxlevelcopy)
|
1110
|
+
templock.unlock();
|
1111
|
+
tableint currObj = enterpoint_node_;
|
1112
|
+
tableint enterpoint_copy = enterpoint_node_;
|
1038
1113
|
|
1039
|
-
|
1114
|
+
memset(data_level0_memory_ + cur_c * size_data_per_element_ + offsetLevel0_, 0, size_data_per_element_);
|
1040
1115
|
|
1041
|
-
|
1042
|
-
|
1043
|
-
|
1116
|
+
// Initialisation of the data and label
|
1117
|
+
memcpy(getExternalLabeLp(cur_c), &label, sizeof(labeltype));
|
1118
|
+
memcpy(getDataByInternalId(cur_c), data_point, data_size_);
|
1044
1119
|
|
1120
|
+
if (curlevel) {
|
1121
|
+
linkLists_[cur_c] = (char *) malloc(size_links_per_element_ * curlevel + 1);
|
1122
|
+
if (linkLists_[cur_c] == nullptr)
|
1123
|
+
throw std::runtime_error("Not enough memory: addPoint failed to allocate linklist");
|
1124
|
+
memset(linkLists_[cur_c], 0, size_links_per_element_ * curlevel + 1);
|
1125
|
+
}
|
1045
1126
|
|
1046
|
-
|
1047
|
-
|
1048
|
-
|
1049
|
-
|
1050
|
-
|
1051
|
-
|
1127
|
+
if ((signed)currObj != -1) {
|
1128
|
+
if (curlevel < maxlevelcopy) {
|
1129
|
+
dist_t curdist = fstdistfunc_(data_point, getDataByInternalId(currObj), dist_func_param_);
|
1130
|
+
for (int level = maxlevelcopy; level > curlevel; level--) {
|
1131
|
+
bool changed = true;
|
1132
|
+
while (changed) {
|
1133
|
+
changed = false;
|
1134
|
+
unsigned int *data;
|
1135
|
+
std::unique_lock <std::mutex> lock(link_list_locks_[currObj]);
|
1136
|
+
data = get_linklist(currObj, level);
|
1137
|
+
int size = getListCount(data);
|
1052
1138
|
|
1053
|
-
|
1054
|
-
|
1055
|
-
|
1056
|
-
|
1057
|
-
|
1058
|
-
|
1059
|
-
|
1060
|
-
|
1061
|
-
|
1062
|
-
|
1063
|
-
changed = false;
|
1064
|
-
unsigned int *data;
|
1065
|
-
std::unique_lock <std::mutex> lock(link_list_locks_[currObj]);
|
1066
|
-
data = get_linklist(currObj,level);
|
1067
|
-
int size = getListCount(data);
|
1068
|
-
|
1069
|
-
tableint *datal = (tableint *) (data + 1);
|
1070
|
-
for (int i = 0; i < size; i++) {
|
1071
|
-
tableint cand = datal[i];
|
1072
|
-
if (cand < 0 || cand > max_elements_)
|
1073
|
-
throw std::runtime_error("cand error");
|
1074
|
-
dist_t d = fstdistfunc_(data_point, getDataByInternalId(cand), dist_func_param_);
|
1075
|
-
if (d < curdist) {
|
1076
|
-
curdist = d;
|
1077
|
-
currObj = cand;
|
1078
|
-
changed = true;
|
1079
|
-
}
|
1139
|
+
tableint *datal = (tableint *) (data + 1);
|
1140
|
+
for (int i = 0; i < size; i++) {
|
1141
|
+
tableint cand = datal[i];
|
1142
|
+
if (cand < 0 || cand > max_elements_)
|
1143
|
+
throw std::runtime_error("cand error");
|
1144
|
+
dist_t d = fstdistfunc_(data_point, getDataByInternalId(cand), dist_func_param_);
|
1145
|
+
if (d < curdist) {
|
1146
|
+
curdist = d;
|
1147
|
+
currObj = cand;
|
1148
|
+
changed = true;
|
1080
1149
|
}
|
1081
1150
|
}
|
1082
1151
|
}
|
1083
1152
|
}
|
1153
|
+
}
|
1084
1154
|
|
1085
|
-
|
1086
|
-
|
1087
|
-
|
1088
|
-
|
1089
|
-
|
1090
|
-
|
1091
|
-
|
1092
|
-
|
1093
|
-
|
1094
|
-
|
1095
|
-
|
1096
|
-
}
|
1097
|
-
currObj = mutuallyConnectNewElement(data_point, cur_c, top_candidates, level, false);
|
1155
|
+
bool epDeleted = isMarkedDeleted(enterpoint_copy);
|
1156
|
+
for (int level = std::min(curlevel, maxlevelcopy); level >= 0; level--) {
|
1157
|
+
if (level > maxlevelcopy || level < 0) // possible?
|
1158
|
+
throw std::runtime_error("Level error");
|
1159
|
+
|
1160
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> top_candidates = searchBaseLayer(
|
1161
|
+
currObj, data_point, level);
|
1162
|
+
if (epDeleted) {
|
1163
|
+
top_candidates.emplace(fstdistfunc_(data_point, getDataByInternalId(enterpoint_copy), dist_func_param_), enterpoint_copy);
|
1164
|
+
if (top_candidates.size() > ef_construction_)
|
1165
|
+
top_candidates.pop();
|
1098
1166
|
}
|
1099
|
-
|
1100
|
-
|
1101
|
-
} else {
|
1102
|
-
// Do nothing for the first element
|
1103
|
-
enterpoint_node_ = 0;
|
1104
|
-
maxlevel_ = curlevel;
|
1105
|
-
|
1167
|
+
currObj = mutuallyConnectNewElement(data_point, cur_c, top_candidates, level, false);
|
1106
1168
|
}
|
1169
|
+
} else {
|
1170
|
+
// Do nothing for the first element
|
1171
|
+
enterpoint_node_ = 0;
|
1172
|
+
maxlevel_ = curlevel;
|
1173
|
+
}
|
1107
1174
|
|
1108
|
-
|
1109
|
-
|
1110
|
-
|
1111
|
-
|
1112
|
-
|
1113
|
-
|
1114
|
-
|
1175
|
+
// Releasing lock for the maximum level
|
1176
|
+
if (curlevel > maxlevelcopy) {
|
1177
|
+
enterpoint_node_ = cur_c;
|
1178
|
+
maxlevel_ = curlevel;
|
1179
|
+
}
|
1180
|
+
return cur_c;
|
1181
|
+
}
|
1115
1182
|
|
1116
|
-
std::priority_queue<std::pair<dist_t, labeltype >>
|
1117
|
-
searchKnn(const void *query_data, size_t k) const {
|
1118
|
-
std::priority_queue<std::pair<dist_t, labeltype >> result;
|
1119
|
-
if (cur_element_count == 0) return result;
|
1120
1183
|
|
1121
|
-
|
1122
|
-
|
1184
|
+
std::priority_queue<std::pair<dist_t, labeltype >>
|
1185
|
+
searchKnn(const void *query_data, size_t k, BaseFilterFunctor* isIdAllowed = nullptr) const {
|
1186
|
+
std::priority_queue<std::pair<dist_t, labeltype >> result;
|
1187
|
+
if (cur_element_count == 0) return result;
|
1123
1188
|
|
1124
|
-
|
1125
|
-
|
1126
|
-
while (changed) {
|
1127
|
-
changed = false;
|
1128
|
-
unsigned int *data;
|
1189
|
+
tableint currObj = enterpoint_node_;
|
1190
|
+
dist_t curdist = fstdistfunc_(query_data, getDataByInternalId(enterpoint_node_), dist_func_param_);
|
1129
1191
|
|
1130
|
-
|
1131
|
-
|
1132
|
-
|
1133
|
-
|
1192
|
+
for (int level = maxlevel_; level > 0; level--) {
|
1193
|
+
bool changed = true;
|
1194
|
+
while (changed) {
|
1195
|
+
changed = false;
|
1196
|
+
unsigned int *data;
|
1134
1197
|
|
1135
|
-
|
1136
|
-
|
1137
|
-
|
1138
|
-
|
1139
|
-
throw std::runtime_error("cand error");
|
1140
|
-
dist_t d = fstdistfunc_(query_data, getDataByInternalId(cand), dist_func_param_);
|
1198
|
+
data = (unsigned int *) get_linklist(currObj, level);
|
1199
|
+
int size = getListCount(data);
|
1200
|
+
metric_hops++;
|
1201
|
+
metric_distance_computations+=size;
|
1141
1202
|
|
1142
|
-
|
1143
|
-
|
1144
|
-
|
1145
|
-
|
1146
|
-
|
1203
|
+
tableint *datal = (tableint *) (data + 1);
|
1204
|
+
for (int i = 0; i < size; i++) {
|
1205
|
+
tableint cand = datal[i];
|
1206
|
+
if (cand < 0 || cand > max_elements_)
|
1207
|
+
throw std::runtime_error("cand error");
|
1208
|
+
dist_t d = fstdistfunc_(query_data, getDataByInternalId(cand), dist_func_param_);
|
1209
|
+
|
1210
|
+
if (d < curdist) {
|
1211
|
+
curdist = d;
|
1212
|
+
currObj = cand;
|
1213
|
+
changed = true;
|
1147
1214
|
}
|
1148
1215
|
}
|
1149
1216
|
}
|
1217
|
+
}
|
1150
1218
|
|
1151
|
-
|
1152
|
-
|
1153
|
-
|
1154
|
-
|
1155
|
-
|
1156
|
-
|
1157
|
-
|
1158
|
-
|
1159
|
-
}
|
1219
|
+
std::priority_queue<std::pair<dist_t, tableint>, std::vector<std::pair<dist_t, tableint>>, CompareByFirst> top_candidates;
|
1220
|
+
if (num_deleted_) {
|
1221
|
+
top_candidates = searchBaseLayerST<true, true>(
|
1222
|
+
currObj, query_data, std::max(ef_, k), isIdAllowed);
|
1223
|
+
} else {
|
1224
|
+
top_candidates = searchBaseLayerST<false, true>(
|
1225
|
+
currObj, query_data, std::max(ef_, k), isIdAllowed);
|
1226
|
+
}
|
1160
1227
|
|
1161
|
-
|
1162
|
-
|
1163
|
-
|
1164
|
-
|
1165
|
-
|
1166
|
-
|
1167
|
-
|
1168
|
-
|
1169
|
-
|
1170
|
-
|
1171
|
-
|
1172
|
-
void checkIntegrity(){
|
1173
|
-
int connections_checked=0;
|
1174
|
-
std::vector <int > inbound_connections_num(cur_element_count,0);
|
1175
|
-
for(int i = 0;i < cur_element_count; i++){
|
1176
|
-
for(int l = 0;l <= element_levels_[i]; l++){
|
1177
|
-
linklistsizeint *ll_cur = get_linklist_at_level(i,l);
|
1178
|
-
int size = getListCount(ll_cur);
|
1179
|
-
tableint *data = (tableint *) (ll_cur + 1);
|
1180
|
-
std::unordered_set<tableint> s;
|
1181
|
-
for (int j=0; j<size; j++){
|
1182
|
-
assert(data[j] > 0);
|
1183
|
-
assert(data[j] < cur_element_count);
|
1184
|
-
assert (data[j] != i);
|
1185
|
-
inbound_connections_num[data[j]]++;
|
1186
|
-
s.insert(data[j]);
|
1187
|
-
connections_checked++;
|
1228
|
+
while (top_candidates.size() > k) {
|
1229
|
+
top_candidates.pop();
|
1230
|
+
}
|
1231
|
+
while (top_candidates.size() > 0) {
|
1232
|
+
std::pair<dist_t, tableint> rez = top_candidates.top();
|
1233
|
+
result.push(std::pair<dist_t, labeltype>(rez.first, getExternalLabel(rez.second)));
|
1234
|
+
top_candidates.pop();
|
1235
|
+
}
|
1236
|
+
return result;
|
1237
|
+
}
|
1188
1238
|
|
1189
|
-
|
1190
|
-
|
1239
|
+
|
1240
|
+
void checkIntegrity() {
|
1241
|
+
int connections_checked = 0;
|
1242
|
+
std::vector <int > inbound_connections_num(cur_element_count, 0);
|
1243
|
+
for (int i = 0; i < cur_element_count; i++) {
|
1244
|
+
for (int l = 0; l <= element_levels_[i]; l++) {
|
1245
|
+
linklistsizeint *ll_cur = get_linklist_at_level(i, l);
|
1246
|
+
int size = getListCount(ll_cur);
|
1247
|
+
tableint *data = (tableint *) (ll_cur + 1);
|
1248
|
+
std::unordered_set<tableint> s;
|
1249
|
+
for (int j = 0; j < size; j++) {
|
1250
|
+
assert(data[j] > 0);
|
1251
|
+
assert(data[j] < cur_element_count);
|
1252
|
+
assert(data[j] != i);
|
1253
|
+
inbound_connections_num[data[j]]++;
|
1254
|
+
s.insert(data[j]);
|
1255
|
+
connections_checked++;
|
1191
1256
|
}
|
1257
|
+
assert(s.size() == size);
|
1192
1258
|
}
|
1193
|
-
|
1194
|
-
|
1195
|
-
|
1196
|
-
|
1197
|
-
|
1198
|
-
|
1199
|
-
|
1200
|
-
std::cout << "Min inbound: " << min1 << ", Max inbound:" << max1 << "\n";
|
1259
|
+
}
|
1260
|
+
if (cur_element_count > 1) {
|
1261
|
+
int min1 = inbound_connections_num[0], max1 = inbound_connections_num[0];
|
1262
|
+
for (int i=0; i < cur_element_count; i++) {
|
1263
|
+
assert(inbound_connections_num[i] > 0);
|
1264
|
+
min1 = std::min(inbound_connections_num[i], min1);
|
1265
|
+
max1 = std::max(inbound_connections_num[i], max1);
|
1201
1266
|
}
|
1202
|
-
std::cout << "
|
1203
|
-
|
1267
|
+
std::cout << "Min inbound: " << min1 << ", Max inbound:" << max1 << "\n";
|
1204
1268
|
}
|
1205
|
-
|
1206
|
-
}
|
1207
|
-
|
1208
|
-
}
|
1269
|
+
std::cout << "integrity ok, checked " << connections_checked << " connections\n";
|
1270
|
+
}
|
1271
|
+
};
|
1272
|
+
} // namespace hnswlib
|