hnswlib 0.1.0 → 0.4.0
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- checksums.yaml +4 -4
- data/.gitignore +2 -1
- data/CHANGELOG.md +19 -1
- data/Gemfile +2 -0
- data/README.md +6 -2
- data/Steepfile +27 -0
- data/ext/hnswlib/hnswlibext.cpp +1 -0
- data/ext/hnswlib/hnswlibext.hpp +227 -4
- data/ext/hnswlib/src/bruteforce.h +3 -2
- data/ext/hnswlib/src/hnswalg.h +2 -1
- data/ext/hnswlib/src/space_ip.h +1 -0
- data/ext/hnswlib/src/space_l2.h +1 -0
- data/hnswlib.gemspec +1 -1
- data/lib/hnswlib/version.rb +2 -1
- data/lib/hnswlib.rb +6 -4
- data/sig/hnswlib.rbs +69 -0
- metadata +5 -3
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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3
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+
metadata.gz: 99f5f1403a51083df75ef842a11b996fe6c159f95c3798f217a076cb5f535254
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4
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+
data.tar.gz: f9972ac4e644727a126e937e81494cc11bc051bc7ff0daf57139845aed1e7719
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: c4f96fceab228e3cffd9f2b77e513b86fe71ec3156cdff10c0bc9206ad7951f87c507531088f91f45a940c399102bff6a2dedc5fee8b09b37a5f5739e9a02b6c
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7
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+
data.tar.gz: 8297e1e0d1f6753b3e8900b07b80dba271276a14303b102cd8084e480ec491da269baac1fc8be08ab350976fc22cb859583745dc219d73d6f56b33fe7502ac2b
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data/.gitignore
CHANGED
data/CHANGELOG.md
CHANGED
@@ -1,4 +1,22 @@
|
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1
|
-
## [
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1
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+
## [0.4.0] - 2021-09-12
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2
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+
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3
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+
- Add type declaration file.
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4
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+
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5
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## [0.3.0] - 2021-08-08
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6
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+
|
7
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+
- Rename `Hnswlib::Index` to `Hnswlib::HnswIndex` (for compatibility, `Hnswlib::Index` has been an alis for `Hnswlib::HnswIndex`).
|
8
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+
- Update API documentation.
|
9
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+
|
10
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+
## [0.2.0] - 2021-08-02
|
11
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+
|
12
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+
- Add binding class for the BruteforceSearch.
|
13
|
+
- Add type check for arguments of initialize methods of BruteforceSearch and HierarchicalNSW.
|
14
|
+
- Add dummy constructor call at memory allocation for class to prevent occuring segment fault on GC when initialize method is failed.
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15
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+
|
16
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+
## [0.1.1] - 2021-07-25
|
17
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+
|
18
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+
- Fix to use `rb_obj_is_isntance_of` for klass comparison due to type error when loading search index on irb 1.3.x: [issue #1](https://github.com/yoshoku/hnswlib.rb/issues/1)
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19
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+
- Update API documentation.
|
2
20
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|
3
21
|
## [0.1.0] - 2021-07-24
|
4
22
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|
data/Gemfile
CHANGED
data/README.md
CHANGED
@@ -35,7 +35,7 @@ Or install it yourself as:
|
|
35
35
|
require 'hnswlib'
|
36
36
|
|
37
37
|
f = 40 # length of item vector that will be indexed.
|
38
|
-
t = Hnswlib::
|
38
|
+
t = Hnswlib::HnswIndex.new(n_features: f, max_item: 1000)
|
39
39
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|
40
40
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1000.times do |i|
|
41
41
|
v = Array.new(f) { rand }
|
@@ -44,11 +44,15 @@ end
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|
44
44
|
|
45
45
|
t.save('test.ann')
|
46
46
|
|
47
|
-
u = Hnswlib::
|
47
|
+
u = Hnswlib::HnswIndex.new(n_features: f, max_item: 1000)
|
48
48
|
u.load('test.ann')
|
49
49
|
p u.get_nns_by_item(0, 100) # will find the 100 nearest neighbors.
|
50
50
|
```
|
51
51
|
|
52
|
+
## License
|
53
|
+
|
54
|
+
The gem is available as open source under the terms of the [Apache-2.0 License](https://www.apache.org/licenses/LICENSE-2.0).
|
55
|
+
|
52
56
|
## Contributing
|
53
57
|
|
54
58
|
Bug reports and pull requests are welcome on GitHub at https://github.com/yoshoku/hnswlib.rb.
|
data/Steepfile
ADDED
@@ -0,0 +1,27 @@
|
|
1
|
+
# D = Steep::Diagnostic
|
2
|
+
#
|
3
|
+
target :lib do
|
4
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+
signature "sig"
|
5
|
+
#
|
6
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+
check "lib" # Directory name
|
7
|
+
# check "Gemfile" # File name
|
8
|
+
# check "app/models/**/*.rb" # Glob
|
9
|
+
# # ignore "lib/templates/*.rb"
|
10
|
+
#
|
11
|
+
# # library "pathname", "set" # Standard libraries
|
12
|
+
# # library "strong_json" # Gems
|
13
|
+
#
|
14
|
+
# # configure_code_diagnostics(D::Ruby.strict) # `strict` diagnostics setting
|
15
|
+
# # configure_code_diagnostics(D::Ruby.lenient) # `lenient` diagnostics setting
|
16
|
+
# # configure_code_diagnostics do |hash| # You can setup everything yourself
|
17
|
+
# # hash[D::Ruby::NoMethod] = :information
|
18
|
+
# # end
|
19
|
+
end
|
20
|
+
|
21
|
+
# target :test do
|
22
|
+
# signature "sig", "sig-private"
|
23
|
+
#
|
24
|
+
# check "test"
|
25
|
+
#
|
26
|
+
# # library "pathname", "set" # Standard libraries
|
27
|
+
# end
|
data/ext/hnswlib/hnswlibext.cpp
CHANGED
data/ext/hnswlib/hnswlibext.hpp
CHANGED
@@ -26,11 +26,13 @@
|
|
26
26
|
VALUE rb_cHnswlibL2Space;
|
27
27
|
VALUE rb_cHnswlibInnerProductSpace;
|
28
28
|
VALUE rb_cHnswlibHierarchicalNSW;
|
29
|
+
VALUE rb_cHnswlibBruteforceSearch;
|
29
30
|
|
30
31
|
class RbHnswlibL2Space {
|
31
32
|
public:
|
32
33
|
static VALUE hnsw_l2space_alloc(VALUE self) {
|
33
34
|
hnswlib::L2Space* ptr = (hnswlib::L2Space*)ruby_xmalloc(sizeof(hnswlib::L2Space));
|
35
|
+
new (ptr) hnswlib::L2Space(); // dummy call to constructor for GC.
|
34
36
|
return TypedData_Wrap_Struct(self, &hnsw_l2space_type, ptr);
|
35
37
|
};
|
36
38
|
|
@@ -106,6 +108,7 @@ class RbHnswlibInnerProductSpace {
|
|
106
108
|
public:
|
107
109
|
static VALUE hnsw_ipspace_alloc(VALUE self) {
|
108
110
|
hnswlib::InnerProductSpace* ptr = (hnswlib::InnerProductSpace*)ruby_xmalloc(sizeof(hnswlib::InnerProductSpace));
|
111
|
+
new (ptr) hnswlib::InnerProductSpace(); // dummy call to constructor for GC.
|
109
112
|
return TypedData_Wrap_Struct(self, &hnsw_ipspace_type, ptr);
|
110
113
|
};
|
111
114
|
|
@@ -181,6 +184,7 @@ class RbHnswlibHierarchicalNSW {
|
|
181
184
|
public:
|
182
185
|
static VALUE hnsw_hierarchicalnsw_alloc(VALUE self) {
|
183
186
|
hnswlib::HierarchicalNSW<float>* ptr = (hnswlib::HierarchicalNSW<float>*)ruby_xmalloc(sizeof(hnswlib::HierarchicalNSW<float>));
|
187
|
+
new (ptr) hnswlib::HierarchicalNSW<float>(); // dummy call to constructor for GC.
|
184
188
|
return TypedData_Wrap_Struct(self, &hnsw_hierarchicalnsw_type, ptr);
|
185
189
|
};
|
186
190
|
|
@@ -239,9 +243,30 @@ class RbHnswlibHierarchicalNSW {
|
|
239
243
|
if (kw_values[3] == Qundef) kw_values[3] = INT2NUM(200);
|
240
244
|
if (kw_values[4] == Qundef) kw_values[4] = INT2NUM(100);
|
241
245
|
|
246
|
+
if (!(rb_obj_is_instance_of(kw_values[0], rb_cHnswlibL2Space) || rb_obj_is_instance_of(kw_values[0], rb_cHnswlibInnerProductSpace))) {
|
247
|
+
rb_raise(rb_eTypeError, "expected space, Hnswlib::L2Space or Hnswlib::InnerProductSpace");
|
248
|
+
return Qnil;
|
249
|
+
}
|
250
|
+
if (!RB_INTEGER_TYPE_P(kw_values[1])) {
|
251
|
+
rb_raise(rb_eTypeError, "expected max_elements, Integer");
|
252
|
+
return Qnil;
|
253
|
+
}
|
254
|
+
if (!RB_INTEGER_TYPE_P(kw_values[2])) {
|
255
|
+
rb_raise(rb_eTypeError, "expected m, Integer");
|
256
|
+
return Qnil;
|
257
|
+
}
|
258
|
+
if (!RB_INTEGER_TYPE_P(kw_values[3])) {
|
259
|
+
rb_raise(rb_eTypeError, "expected ef_construction, Integer");
|
260
|
+
return Qnil;
|
261
|
+
}
|
262
|
+
if (!RB_INTEGER_TYPE_P(kw_values[4])) {
|
263
|
+
rb_raise(rb_eTypeError, "expected random_seed, Integer");
|
264
|
+
return Qnil;
|
265
|
+
}
|
266
|
+
|
242
267
|
rb_iv_set(self, "@space", kw_values[0]);
|
243
268
|
hnswlib::SpaceInterface<float>* space;
|
244
|
-
if (
|
269
|
+
if (rb_obj_is_instance_of(kw_values[0], rb_cHnswlibL2Space)) {
|
245
270
|
space = RbHnswlibL2Space::get_hnsw_l2space(kw_values[0]);
|
246
271
|
} else {
|
247
272
|
space = RbHnswlibInnerProductSpace::get_hnsw_ipspace(kw_values[0]);
|
@@ -344,11 +369,12 @@ class RbHnswlibHierarchicalNSW {
|
|
344
369
|
|
345
370
|
static VALUE _hnsw_hierarchicalnsw_load_index(VALUE self, VALUE _filename) {
|
346
371
|
std::string filename(StringValuePtr(_filename));
|
372
|
+
VALUE ivspace = rb_iv_get(self, "@space");
|
347
373
|
hnswlib::SpaceInterface<float>* space;
|
348
|
-
if (
|
349
|
-
space = RbHnswlibL2Space::get_hnsw_l2space(
|
374
|
+
if (rb_obj_is_instance_of(ivspace, rb_cHnswlibL2Space)) {
|
375
|
+
space = RbHnswlibL2Space::get_hnsw_l2space(ivspace);
|
350
376
|
} else {
|
351
|
-
space = RbHnswlibInnerProductSpace::get_hnsw_ipspace(
|
377
|
+
space = RbHnswlibInnerProductSpace::get_hnsw_ipspace(ivspace);
|
352
378
|
}
|
353
379
|
get_hnsw_hierarchicalnsw(self)->loadIndex(filename, space);
|
354
380
|
RB_GC_GUARD(_filename);
|
@@ -417,4 +443,201 @@ const rb_data_type_t RbHnswlibHierarchicalNSW::hnsw_hierarchicalnsw_type = {
|
|
417
443
|
RUBY_TYPED_FREE_IMMEDIATELY
|
418
444
|
};
|
419
445
|
|
446
|
+
class RbHnswlibBruteforceSearch {
|
447
|
+
public:
|
448
|
+
static VALUE hnsw_bruteforcesearch_alloc(VALUE self) {
|
449
|
+
hnswlib::BruteforceSearch<float>* ptr = (hnswlib::BruteforceSearch<float>*)ruby_xmalloc(sizeof(hnswlib::BruteforceSearch<float>));
|
450
|
+
new (ptr) hnswlib::BruteforceSearch<float>(); // dummy call to constructor for GC.
|
451
|
+
return TypedData_Wrap_Struct(self, &hnsw_bruteforcesearch_type, ptr);
|
452
|
+
};
|
453
|
+
|
454
|
+
static void hnsw_bruteforcesearch_free(void* ptr) {
|
455
|
+
((hnswlib::BruteforceSearch<float>*)ptr)->~BruteforceSearch();
|
456
|
+
ruby_xfree(ptr);
|
457
|
+
};
|
458
|
+
|
459
|
+
static size_t hnsw_bruteforcesearch_size(const void* ptr) {
|
460
|
+
return sizeof(*((hnswlib::BruteforceSearch<float>*)ptr));
|
461
|
+
};
|
462
|
+
|
463
|
+
static hnswlib::BruteforceSearch<float>* get_hnsw_bruteforcesearch(VALUE self) {
|
464
|
+
hnswlib::BruteforceSearch<float>* ptr;
|
465
|
+
TypedData_Get_Struct(self, hnswlib::BruteforceSearch<float>, &hnsw_bruteforcesearch_type, ptr);
|
466
|
+
return ptr;
|
467
|
+
};
|
468
|
+
|
469
|
+
static VALUE define_class(VALUE rb_mHnswlib) {
|
470
|
+
rb_cHnswlibBruteforceSearch = rb_define_class_under(rb_mHnswlib, "BruteforceSearch", rb_cObject);
|
471
|
+
rb_define_alloc_func(rb_cHnswlibBruteforceSearch, hnsw_bruteforcesearch_alloc);
|
472
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "initialize", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_init), -1);
|
473
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "add_point", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_add_point), 2);
|
474
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "search_knn", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_search_knn), 2);
|
475
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "save_index", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_save_index), 1);
|
476
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "load_index", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_load_index), 1);
|
477
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "remove_point", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_remove_point), 1);
|
478
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "max_elements", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_max_elements), 0);
|
479
|
+
rb_define_method(rb_cHnswlibBruteforceSearch, "current_count", RUBY_METHOD_FUNC(_hnsw_bruteforcesearch_current_count), 0);
|
480
|
+
rb_define_attr(rb_cHnswlibBruteforceSearch, "space", 1, 0);
|
481
|
+
return rb_cHnswlibBruteforceSearch;
|
482
|
+
};
|
483
|
+
|
484
|
+
private:
|
485
|
+
static const rb_data_type_t hnsw_bruteforcesearch_type;
|
486
|
+
|
487
|
+
static VALUE _hnsw_bruteforcesearch_init(int argc, VALUE* argv, VALUE self) {
|
488
|
+
VALUE kw_args = Qnil;
|
489
|
+
ID kw_table[2] = { rb_intern("space"), rb_intern("max_elements") };
|
490
|
+
VALUE kw_values[2] = { Qundef, Qundef };
|
491
|
+
rb_scan_args(argc, argv, ":", &kw_args);
|
492
|
+
rb_get_kwargs(kw_args, kw_table, 2, 0, kw_values);
|
493
|
+
|
494
|
+
if (!(rb_obj_is_instance_of(kw_values[0], rb_cHnswlibL2Space) || rb_obj_is_instance_of(kw_values[0], rb_cHnswlibInnerProductSpace))) {
|
495
|
+
rb_raise(rb_eTypeError, "expected space, Hnswlib::L2Space or Hnswlib::InnerProductSpace");
|
496
|
+
return Qnil;
|
497
|
+
}
|
498
|
+
if (!RB_INTEGER_TYPE_P(kw_values[1])) {
|
499
|
+
rb_raise(rb_eTypeError, "expected max_elements, Integer");
|
500
|
+
return Qnil;
|
501
|
+
}
|
502
|
+
|
503
|
+
rb_iv_set(self, "@space", kw_values[0]);
|
504
|
+
hnswlib::SpaceInterface<float>* space;
|
505
|
+
if (rb_obj_is_instance_of(kw_values[0], rb_cHnswlibL2Space)) {
|
506
|
+
space = RbHnswlibL2Space::get_hnsw_l2space(kw_values[0]);
|
507
|
+
} else {
|
508
|
+
space = RbHnswlibInnerProductSpace::get_hnsw_ipspace(kw_values[0]);
|
509
|
+
}
|
510
|
+
const size_t max_elements = (size_t)NUM2INT(kw_values[1]);
|
511
|
+
|
512
|
+
hnswlib::BruteforceSearch<float>* ptr = get_hnsw_bruteforcesearch(self);
|
513
|
+
new (ptr) hnswlib::BruteforceSearch<float>(space, max_elements);
|
514
|
+
|
515
|
+
return Qnil;
|
516
|
+
};
|
517
|
+
|
518
|
+
static VALUE _hnsw_bruteforcesearch_add_point(VALUE self, VALUE arr, VALUE idx) {
|
519
|
+
const int dim = NUM2INT(rb_iv_get(rb_iv_get(self, "@space"), "@dim"));
|
520
|
+
|
521
|
+
if (!RB_TYPE_P(arr, T_ARRAY)) {
|
522
|
+
rb_raise(rb_eArgError, "Expect point vector to be Ruby Array.");
|
523
|
+
return Qfalse;
|
524
|
+
}
|
525
|
+
|
526
|
+
if (!RB_INTEGER_TYPE_P(idx)) {
|
527
|
+
rb_raise(rb_eArgError, "Expect index to be Ruby Integer.");
|
528
|
+
return Qfalse;
|
529
|
+
}
|
530
|
+
|
531
|
+
if (dim != RARRAY_LEN(arr)) {
|
532
|
+
rb_raise(rb_eArgError, "Array size does not match to index dimensionality.");
|
533
|
+
return Qfalse;
|
534
|
+
}
|
535
|
+
|
536
|
+
float* vec = (float*)ruby_xmalloc(dim * sizeof(float));
|
537
|
+
for (int i = 0; i < dim; i++) {
|
538
|
+
vec[i] = (float)NUM2DBL(rb_ary_entry(arr, i));
|
539
|
+
}
|
540
|
+
|
541
|
+
get_hnsw_bruteforcesearch(self)->addPoint((void *)vec, (size_t)NUM2INT(idx));
|
542
|
+
|
543
|
+
ruby_xfree(vec);
|
544
|
+
return Qtrue;
|
545
|
+
};
|
546
|
+
|
547
|
+
static VALUE _hnsw_bruteforcesearch_search_knn(VALUE self, VALUE arr, VALUE k) {
|
548
|
+
const int dim = NUM2INT(rb_iv_get(rb_iv_get(self, "@space"), "@dim"));
|
549
|
+
|
550
|
+
if (!RB_TYPE_P(arr, T_ARRAY)) {
|
551
|
+
rb_raise(rb_eArgError, "Expect query vector to be Ruby Array.");
|
552
|
+
return Qnil;
|
553
|
+
}
|
554
|
+
|
555
|
+
if (!RB_INTEGER_TYPE_P(k)) {
|
556
|
+
rb_raise(rb_eArgError, "Expect the number of nearest neighbors to be Ruby Integer.");
|
557
|
+
return Qnil;
|
558
|
+
}
|
559
|
+
|
560
|
+
if (dim != RARRAY_LEN(arr)) {
|
561
|
+
rb_raise(rb_eArgError, "Array size does not match to index dimensionality.");
|
562
|
+
return Qnil;
|
563
|
+
}
|
564
|
+
|
565
|
+
float* vec = (float*)ruby_xmalloc(dim * sizeof(float));
|
566
|
+
for (int i = 0; i < dim; i++) {
|
567
|
+
vec[i] = (float)NUM2DBL(rb_ary_entry(arr, i));
|
568
|
+
}
|
569
|
+
|
570
|
+
std::priority_queue<std::pair<float, size_t>> result =
|
571
|
+
get_hnsw_bruteforcesearch(self)->searchKnn((void *)vec, (size_t)NUM2INT(k));
|
572
|
+
|
573
|
+
ruby_xfree(vec);
|
574
|
+
|
575
|
+
if (result.size() != (size_t)NUM2INT(k)) {
|
576
|
+
rb_raise(rb_eRuntimeError, "Cannot return the results in a contigious 2D array. Probably ef or M is too small.");
|
577
|
+
return Qnil;
|
578
|
+
}
|
579
|
+
|
580
|
+
VALUE distances_arr = rb_ary_new2(result.size());
|
581
|
+
VALUE neighbors_arr = rb_ary_new2(result.size());
|
582
|
+
|
583
|
+
for (int i = NUM2INT(k) - 1; i >= 0; i--) {
|
584
|
+
const std::pair<float, size_t>& result_tuple = result.top();
|
585
|
+
rb_ary_store(distances_arr, i, DBL2NUM((double)result_tuple.first));
|
586
|
+
rb_ary_store(neighbors_arr, i, INT2NUM((int)result_tuple.second));
|
587
|
+
result.pop();
|
588
|
+
}
|
589
|
+
|
590
|
+
VALUE ret = rb_ary_new2(2);
|
591
|
+
rb_ary_store(ret, 0, neighbors_arr);
|
592
|
+
rb_ary_store(ret, 1, distances_arr);
|
593
|
+
return ret;
|
594
|
+
};
|
595
|
+
|
596
|
+
static VALUE _hnsw_bruteforcesearch_save_index(VALUE self, VALUE _filename) {
|
597
|
+
std::string filename(StringValuePtr(_filename));
|
598
|
+
get_hnsw_bruteforcesearch(self)->saveIndex(filename);
|
599
|
+
RB_GC_GUARD(_filename);
|
600
|
+
return Qnil;
|
601
|
+
};
|
602
|
+
|
603
|
+
static VALUE _hnsw_bruteforcesearch_load_index(VALUE self, VALUE _filename) {
|
604
|
+
std::string filename(StringValuePtr(_filename));
|
605
|
+
VALUE ivspace = rb_iv_get(self, "@space");
|
606
|
+
hnswlib::SpaceInterface<float>* space;
|
607
|
+
if (rb_obj_is_instance_of(ivspace, rb_cHnswlibL2Space)) {
|
608
|
+
space = RbHnswlibL2Space::get_hnsw_l2space(ivspace);
|
609
|
+
} else {
|
610
|
+
space = RbHnswlibInnerProductSpace::get_hnsw_ipspace(ivspace);
|
611
|
+
}
|
612
|
+
get_hnsw_bruteforcesearch(self)->loadIndex(filename, space);
|
613
|
+
RB_GC_GUARD(_filename);
|
614
|
+
return Qnil;
|
615
|
+
};
|
616
|
+
|
617
|
+
static VALUE _hnsw_bruteforcesearch_remove_point(VALUE self, VALUE idx) {
|
618
|
+
get_hnsw_bruteforcesearch(self)->removePoint((size_t)NUM2INT(idx));
|
619
|
+
return Qnil;
|
620
|
+
};
|
621
|
+
|
622
|
+
static VALUE _hnsw_bruteforcesearch_max_elements(VALUE self) {
|
623
|
+
return INT2NUM((int)(get_hnsw_bruteforcesearch(self)->maxelements_));
|
624
|
+
};
|
625
|
+
|
626
|
+
static VALUE _hnsw_bruteforcesearch_current_count(VALUE self) {
|
627
|
+
return INT2NUM((int)(get_hnsw_bruteforcesearch(self)->cur_element_count));
|
628
|
+
};
|
629
|
+
};
|
630
|
+
|
631
|
+
const rb_data_type_t RbHnswlibBruteforceSearch::hnsw_bruteforcesearch_type = {
|
632
|
+
"RbHnswlibBruteforceSearch",
|
633
|
+
{
|
634
|
+
NULL,
|
635
|
+
RbHnswlibBruteforceSearch::hnsw_bruteforcesearch_free,
|
636
|
+
RbHnswlibBruteforceSearch::hnsw_bruteforcesearch_size
|
637
|
+
},
|
638
|
+
NULL,
|
639
|
+
NULL,
|
640
|
+
RUBY_TYPED_FREE_IMMEDIATELY
|
641
|
+
};
|
642
|
+
|
420
643
|
#endif /* HNSWLIBEXT_HPP */
|
@@ -8,6 +8,7 @@ namespace hnswlib {
|
|
8
8
|
template<typename dist_t>
|
9
9
|
class BruteforceSearch : public AlgorithmInterface<dist_t> {
|
10
10
|
public:
|
11
|
+
BruteforceSearch() : data_(nullptr) { }
|
11
12
|
BruteforceSearch(SpaceInterface <dist_t> *s) {
|
12
13
|
|
13
14
|
}
|
@@ -91,13 +92,13 @@ namespace hnswlib {
|
|
91
92
|
searchKnn(const void *query_data, size_t k) const {
|
92
93
|
std::priority_queue<std::pair<dist_t, labeltype >> topResults;
|
93
94
|
if (cur_element_count == 0) return topResults;
|
94
|
-
for (
|
95
|
+
for (size_t i = 0; i < k; i++) {
|
95
96
|
dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
|
96
97
|
topResults.push(std::pair<dist_t, labeltype>(dist, *((labeltype *) (data_ + size_per_element_ * i +
|
97
98
|
data_size_))));
|
98
99
|
}
|
99
100
|
dist_t lastdist = topResults.top().first;
|
100
|
-
for (
|
101
|
+
for (size_t i = k; i < cur_element_count; i++) {
|
101
102
|
dist_t dist = fstdistfunc_(query_data, data_ + size_per_element_ * i, dist_func_param_);
|
102
103
|
if (dist <= lastdist) {
|
103
104
|
topResults.push(std::pair<dist_t, labeltype>(dist, *((labeltype *) (data_ + size_per_element_ * i +
|
data/ext/hnswlib/src/hnswalg.h
CHANGED
@@ -17,6 +17,7 @@ namespace hnswlib {
|
|
17
17
|
class HierarchicalNSW : public AlgorithmInterface<dist_t> {
|
18
18
|
public:
|
19
19
|
static const tableint max_update_element_locks = 65536;
|
20
|
+
HierarchicalNSW() : visited_list_pool_(nullptr), data_level0_memory_(nullptr), linkLists_(nullptr), cur_element_count(0) { }
|
20
21
|
HierarchicalNSW(SpaceInterface<dist_t> *s) {
|
21
22
|
|
22
23
|
}
|
@@ -757,7 +758,7 @@ namespace hnswlib {
|
|
757
758
|
size_t dim = *((size_t *) dist_func_param_);
|
758
759
|
std::vector<data_t> data;
|
759
760
|
data_t* data_ptr = (data_t*) data_ptrv;
|
760
|
-
for (
|
761
|
+
for (size_t i = 0; i < dim; i++) {
|
761
762
|
data.push_back(*data_ptr);
|
762
763
|
data_ptr += 1;
|
763
764
|
}
|
data/ext/hnswlib/src/space_ip.h
CHANGED
data/ext/hnswlib/src/space_l2.h
CHANGED
data/hnswlib.gemspec
CHANGED
@@ -20,7 +20,7 @@ Gem::Specification.new do |spec|
|
|
20
20
|
# Specify which files should be added to the gem when it is released.
|
21
21
|
# The `git ls-files -z` loads the files in the RubyGem that have been added into git.
|
22
22
|
spec.files = Dir.chdir(File.expand_path(__dir__)) do
|
23
|
-
`git ls-files -z`.split("\x0").reject { |f| f.match(%r{\A(?:test|spec|features)/}) }
|
23
|
+
`git ls-files -z`.split("\x0").reject { |f| f.match(%r{\A(?:test|spec|features)/}) }.reject { |f| f.include?('dummy.rb') }
|
24
24
|
end
|
25
25
|
spec.bindir = 'exe'
|
26
26
|
spec.executables = spec.files.grep(%r{\Aexe/}) { |f| File.basename(f) }
|
data/lib/hnswlib/version.rb
CHANGED
data/lib/hnswlib.rb
CHANGED
@@ -4,12 +4,12 @@ require_relative 'hnswlib/version'
|
|
4
4
|
require_relative 'hnswlib/hnswlibext'
|
5
5
|
|
6
6
|
module Hnswlib
|
7
|
-
#
|
7
|
+
# HnswIndex is a class that provides functions for k-nearest eighbors search.
|
8
8
|
#
|
9
9
|
# @example
|
10
10
|
# require 'hnswlib'
|
11
11
|
#
|
12
|
-
# index = Hnswlib::
|
12
|
+
# index = Hnswlib::HnswIndex.new(n_features: 100, max_item: 10000)
|
13
13
|
#
|
14
14
|
# 5000.times do |item_id|
|
15
15
|
# item_vec = Array.new(100) { rand - 0.5 }
|
@@ -18,7 +18,7 @@ module Hnswlib
|
|
18
18
|
#
|
19
19
|
# index.get_nns_by_item(0, 100)
|
20
20
|
#
|
21
|
-
class
|
21
|
+
class HnswIndex
|
22
22
|
# Returns the metric of index.
|
23
23
|
# @return [String]
|
24
24
|
attr_reader :metric
|
@@ -63,7 +63,6 @@ module Hnswlib
|
|
63
63
|
# Remove the item vector.
|
64
64
|
#
|
65
65
|
# @param i [Integer] The ID of item.
|
66
|
-
# @return [Array]
|
67
66
|
def remove_item(i)
|
68
67
|
@index.mark_deleted(i)
|
69
68
|
end
|
@@ -151,4 +150,7 @@ module Hnswlib
|
|
151
150
|
@index.max_elements
|
152
151
|
end
|
153
152
|
end
|
153
|
+
|
154
|
+
# Index is alias of HnswIndex
|
155
|
+
Index = ::Hnswlib::HnswIndex
|
154
156
|
end
|
data/sig/hnswlib.rbs
ADDED
@@ -0,0 +1,69 @@
|
|
1
|
+
module Hnswlib
|
2
|
+
VERSION: ::String
|
3
|
+
HSWLIB_VERSION: ::String
|
4
|
+
|
5
|
+
class HnswIndex
|
6
|
+
attr_reader metric: String
|
7
|
+
|
8
|
+
def initialize: (n_features: Integer n_features, max_item: Integer max_item, ?metric: ::String metric, ?m: ::Integer m, ?ef_construction: ::Integer ef_construction, ?random_seed: ::Integer random_seed) -> void
|
9
|
+
def add_item: (Integer i, Array[Float] v) -> bool
|
10
|
+
def get_item: (Integer i) -> Array[Float]
|
11
|
+
def remove_item: (Integer i) -> void
|
12
|
+
def get_nns_by_item: (Integer i, Integer n, ?include_distances: (true | false) include_distances) -> ([Array[Integer], Array[Float]] | Array[Integer])
|
13
|
+
def get_nns_by_vector: (Array[Float] v, Integer n, ?include_distances: (true | false) include_distances) -> ([Array[Integer], Array[Float]] | Array[Integer])
|
14
|
+
def resize_index: (Integer new_max_item) -> void
|
15
|
+
def set_ef: (Integer ef) -> void
|
16
|
+
def save: (String filename) -> void
|
17
|
+
def load: (String filename) -> void
|
18
|
+
def get_distance: (Integer i, Integer j) -> Float
|
19
|
+
def n_items: () -> Integer
|
20
|
+
def n_features: () -> Integer
|
21
|
+
def max_item: () -> Integer
|
22
|
+
end
|
23
|
+
|
24
|
+
Index: untyped
|
25
|
+
|
26
|
+
class L2Space
|
27
|
+
attr_accessor dim: Integer
|
28
|
+
|
29
|
+
def initialize: (Integer dim) -> void
|
30
|
+
def distance: (Array[Float] a, Array[Float] b) -> Float
|
31
|
+
end
|
32
|
+
|
33
|
+
class InnerProductSpace
|
34
|
+
attr_accessor dim: Integer
|
35
|
+
|
36
|
+
def initialize: (Integer dim) -> void
|
37
|
+
def distance: (Array[Float] a, Array[Float] b) -> Float
|
38
|
+
end
|
39
|
+
|
40
|
+
class BruteforceSearch
|
41
|
+
attr_accessor space: (::Hnswlib::L2Space | ::Hnswlib::InnerProductSpace)
|
42
|
+
|
43
|
+
def initialize: (space: (::Hnswlib::L2Space | ::Hnswlib::InnerProductSpace) space, max_elements: Integer max_elements) -> void
|
44
|
+
def add_point: (Array[Float] arr, Integer idx) -> bool
|
45
|
+
def current_count: () -> Integer
|
46
|
+
def load_index: (String filename) -> void
|
47
|
+
def max_elements: () -> Integer
|
48
|
+
def remove_point: (Integer idx) -> void
|
49
|
+
def save_index: (String filename) -> void
|
50
|
+
def search_knn: (Array[Float] arr, Integer k) -> [Array[Integer], Array[Float]]
|
51
|
+
end
|
52
|
+
|
53
|
+
class HierarchicalNSW
|
54
|
+
attr_accessor space: (::Hnswlib::L2Space | ::Hnswlib::InnerProductSpace)
|
55
|
+
|
56
|
+
def initialize: (space: (::Hnswlib::L2Space | ::Hnswlib::InnerProductSpace) space, max_elements: Integer max_elements, ?m: Integer m, ?ef_construction: Integer ef_construction, ?random_seed: Integer random_seed) -> void
|
57
|
+
def add_point: (Array[Float] arr, Integer idx) -> bool
|
58
|
+
def current_count: () -> Integer
|
59
|
+
def get_ids: () -> Array[Integer]
|
60
|
+
def get_point: (Integer idx) -> Array[Float]
|
61
|
+
def load_index: (String filename) -> void
|
62
|
+
def mark_deleted: (Integer idx) -> void
|
63
|
+
def max_elements: () -> Integer
|
64
|
+
def resize_index: (Integer new_max_elements) -> void
|
65
|
+
def save_index: (String filename) -> void
|
66
|
+
def search_knn: (Array[Float] arr, Integer k) -> [Array[Integer], Array[Float]]
|
67
|
+
def set_ef: (Integer ef) -> void
|
68
|
+
end
|
69
|
+
end
|
metadata
CHANGED
@@ -1,14 +1,14 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: hnswlib
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.
|
4
|
+
version: 0.4.0
|
5
5
|
platform: ruby
|
6
6
|
authors:
|
7
7
|
- yoshoku
|
8
8
|
autorequire:
|
9
9
|
bindir: exe
|
10
10
|
cert_chain: []
|
11
|
-
date: 2021-
|
11
|
+
date: 2021-09-11 00:00:00.000000000 Z
|
12
12
|
dependencies: []
|
13
13
|
description: Hnswlib.rb provides Ruby bindings for the Hnswlib.
|
14
14
|
email:
|
@@ -27,6 +27,7 @@ files:
|
|
27
27
|
- LICENSE.txt
|
28
28
|
- README.md
|
29
29
|
- Rakefile
|
30
|
+
- Steepfile
|
30
31
|
- ext/hnswlib/extconf.rb
|
31
32
|
- ext/hnswlib/hnswlibext.cpp
|
32
33
|
- ext/hnswlib/hnswlibext.hpp
|
@@ -40,6 +41,7 @@ files:
|
|
40
41
|
- hnswlib.gemspec
|
41
42
|
- lib/hnswlib.rb
|
42
43
|
- lib/hnswlib/version.rb
|
44
|
+
- sig/hnswlib.rbs
|
43
45
|
homepage: https://github.com/yoshoku/hnswlib.rb
|
44
46
|
licenses:
|
45
47
|
- Apache-2.0
|
@@ -62,7 +64,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
62
64
|
- !ruby/object:Gem::Version
|
63
65
|
version: '0'
|
64
66
|
requirements: []
|
65
|
-
rubygems_version: 3.
|
67
|
+
rubygems_version: 3.2.22
|
66
68
|
signing_key:
|
67
69
|
specification_version: 4
|
68
70
|
summary: Ruby bindings for the Hnswlib.
|