his_emr_api_lab 1.0.2 → 1.0.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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+  metadata.gz: 2df320fe6cce133cd3cd516aebd842d8a9ab7320cb9cb5e2e79340f60b49539f
+  data.tar.gz: 3d6ce39059259b7ce8cf6d7c0bc8c80ebf6d5ffc8866acdf1eebe31fa525d4d1
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+  data.tar.gz: ae44bc491a32582b695aad56c0abfbb21cbd4b1f40843ad9f17cd2ff4d05205fbb5226c1e1cedb24eab9d3700ac6d0e54ba5256f8abb99796cc7827772ff47ec

data/app/services/lab/lims/order_dto.rb

@@ -83,9 +83,9 @@ module Lab
 
       # Translates a LIMS sample priority to a concept_id
       def reason_for_test
-        return unknown_concept.concept_id unless self['sample_priority']
+        return unknown_concept.concept_id unless self['priority']
 
-        ConceptName.find_by_name!(self['sample_priority']).concept_id
+        ConceptName.find_by_name!(self['priority']).concept_id
       end
 
       def lab_program

data/app/services/lab/lims/worker.rb

@@ -313,7 +313,7 @@ module Lab
       end
 
       def guess_result_datatype(result)
-        return 'numeric' if result.strip.match?(/^[+-]?(\d+(\.\d+)|\.\d+)?$/)
+        return 'numeric' if result.strip.match?(/^[+-]?((\d+(\.\d+)?)|\.\d+)$/)
 
         'text'
       end

data/db/migrate/20210610095024_fix_numeric_results_value_type.rb

@@ -0,0 +1,20 @@
+class FixNumericResultsValueType < ActiveRecord::Migration[5.2]
+  def up
+    results = Lab::LabResult.all.includes(:children)
+
+    ActiveRecord::Base.connection.transaction do
+      results.each do |result|
+        result.children.each do |measure|
+          next unless measure.value_text&.match?(/^[+-]?((\d+(\.\d+)?)|\.\d+)$/)
+
+          puts "Updating result value type for result measure ##{measure.obs_id}"
+          measure.value_numeric = measure.value_text
+          measure.value_text = nil
+          measure.save!
+        end
+      end
+    end
+  end
+
+  def down; end
+end

data/lib/lab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Lab
-  VERSION = '1.0.2'
+  VERSION = '1.0.3'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: his_emr_api_lab
 version: !ruby/object:Gem::Version
-  version: 1.0.2
+  version: 1.0.3
 platform: ruby
 authors:
 - Elizabeth Glaser Pediatric Foundation Malawi
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-06-08 00:00:00.000000000 Z
+date: 2021-06-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: couchrest
@@ -270,6 +270,7 @@ files:
 - db/migrate/20210323080140_change_lims_id_to_string_in_lims_order_mapping.rb
 - db/migrate/20210326195504_add_order_revision_to_lims_order_mapping.rb
 - db/migrate/20210407071728_create_lab_lims_failed_imports.rb
+- db/migrate/20210610095024_fix_numeric_results_value_type.rb
 - lib/auto12epl.rb
 - lib/couch_bum/couch_bum.rb
 - lib/generators/lab/install/USAGE